Development of a large population of activation-tagged mutants in an elite indica rice variety     

Vamsee Raja Kota  Sivakrishna Rao Gundra  Dashavantha Reddy Vudem  Bharadwaja Kirti Pulugurtha  Venkateswara Rao Khareedu 《Plant Breeding》2020,139(2):328-343

In this study, we have generated more than 12,000 activation-tagged mutants in a high-yielding indica rice variety, 'BPT 5204', employing maize Ac/Ds system. Different transgenic plants obtained were analysed based on expression patterns of green fluorescence protein (GFP), red fluorescence protein (RFP), herbicide (Basta) tolerance and molecular analyses. T₁ seeds of pSQ5 and pSQ5-bar transgenics, when germinated separately on hygromycin (50 mg/L) and phosphinothricin (5 mg/L) containing medium, revealed a segregation of 3 tolerant : 1 susceptible plants. The germinal transposition frequency of Ds element in different T₂ progeny of rice plants was found to be about 18.0%. Different stable tagged mutants exhibited marked increases in plant height, number of tillers, leaf size, panicle size, seed size and number of grains per plant. The overall results indicate that the genes associated with these traits are upregulated by the enhancer element in activation-tagged mutants. As such, the various tagged mutant lines appear promising and serve as a valuable genetic resource for identification of key genes determining different agronomic traits of rice.  相似文献   

Effect of Nutrient Application on Growth,Metabolic and Enzymatic Activities of Rice Seedlings During Flooding Stress and Subsequent Re‐Aeration          下载免费PDF全文

B. Lal  L. Rath  D. Haldar  B. B. Panda  R. Raja  M. Shahid  R. Tripathi  P. Bhattacharyya  S. Mohanty  A. K. Nayak 《Journal of Agronomy and Crop Science》2015,201(2):138-151

The impact of submergence on the allometry, changes in metabolic activities and antioxidant enzymes during oxidative stress in four Indica rice varieties namely IR‐20, IR‐64 Sub1, Swarna Sub1 and Savitri Sub1 was studied. The differential response of flooding under clear and turbid water with different nutrient application schedules was also examined during and after 12 days of complete submergence. Submergence substantially reduced allometric parameters and the activities of antioxidant enzymes but increased the % change in chlorophyll, soluble sugars and malondialdehyde (MDA) across cultivars with drastic effects on IR‐20. Turbid water resulted in higher leaf senescence, lodging, higher depletion of chlorophyll and soluble sugars because of poor light transmission. Pre‐submergence N application resulted in higher lodging, leaf senescence and higher MDA level but depletion of chlorophyll and NSC leading to higher % change over prior to submergence. Basal P application reduced the senescence and lodging, whereas increased the antioxidant enzyme activities. Foliar spray of post‐submergence N with basal P improved the retention and regain of chlorophyll, soluble sugar and increased the dry matter, leaf area and root shoot ratio. Crop establishment could therefore be enhanced in areas where untimely flooding is anticipated by applying basal P and foliar spray of urea after desubmergence.  相似文献   

Long‐term effects of fertilizer and manure applications on soil quality and yields in a sub‐humid tropical rice‐rice system     

M. Shahid  A. K. Nayak  A. K. Shukla  R. Tripathi  A. Kumar  S. Mohanty  P. Bhattacharyya  R. Raja  B. B. Panda 《Soil Use and Management》2013,29(3):322-332

Widespread yield stagnation and productivity declines in the rice–rice cropping system have been reported and many of the associated issues are related to soil quality. A long‐term experimental study was initiated in 1969 to assess the impact of continuous cultivation of rice as a single crop grown in wet as well as dry seasons using varying levels of chemical fertilizer and manure applications on soil quality indicators (physical, chemical and biological), a sustainable yield index (SYI) and a soil quality index (SQI). The treatments comprised chemical fertilizers and farmyard manure (FYM) either alone or in combination viz. control, N, NP, NK, NPK, FYM, N+FYM, NP+FYM, NK+FYM and NPK+FYM, laid out in a randomized complete block design with three replications. Soil samples were collected after the wet season rice harvest in 2010 and were analysed for physical, chemical and biological indicators of soil quality. A SYI based on long‐term yield data and SQI using principal component analysis (PCA) and nonlinear scoring functions were calculated. Application of NPK fertilizers in combination with FYM significantly increased the average grain yield of rice in both wet and dry seasons and enhanced the sustainability of the system compared to the control and plots in receipt of fertilizers. The SYI for the control was higher in the wet season than in the dry one, whereas the reverse was true for NPK+FYM treatment. The value of the dimensionless SQI varied from 1.46 in the control plot to 3.78 in the NPK+FYM one. A greater SYI and SQI in the NPK+FYM treatment demonstrated the importance of using a chemical fertilizer in combination with FYM. For the six soil quality indicators selected as a minimum data set (MDS), the contribution of DTPA‐Zn, available‐N and soil organic carbon to the SQI was substantial ranging from 59.4 to 85.7 per cent in NPK+FYM and control plots, respectively. Thus, these soil parameters could be used to monitor soil quality in a subhumid tropical rice–rice system.  相似文献   

Molecular markers for yellow stem borer Scirpophaga incertulas (Walker) resistance in rice     

A. Selvi  P. Shanmugasundaram  S. Mohan Kumar  J.A.J. Raja 《Euphytica》2002,124(3):371-377

Breeding for yellow stem borer resistance in rice is difficult owing to the complex genetics of the trait and inherent difficulties in screening. Identification of molecular markers linked to the trait would enhance phenotypic evaluation for the trait. An F₂ population was developed using parents contrasting in their reaction to yellow stem borer resistance. Random Amplified Polymorphic DNA (RAPD) analysis,in conjunction with bulked segregant analysis, enabled us to identify four phenotype-specific RAPD markers. The markers C1₃₂₀ and K6₆₉₅ were linked with resistance and AH5₆₆₀ and C4₁₃₀₀ with susceptibility. The markers K6₆₉₅ and AH5₆₆₀ were linked to the gene(s) at distances of 12.8 cM and 14.9 cM, respectively. Scoring of these markers in a set of germplasm confirmed their reproducibility and their association with the trait. This revised version was published online in August 2006 with corrections to the Cover Date.  相似文献   

Isolation and molecular characterization of canine distemper virus from India     

Pawar RM  Raj GD  Gopinath VP  Ashok A  Raja A 《Tropical animal health and production》2011,43(8):1617-1622

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Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes     

Sait M  Clark EM  Wheelhouse N  Spalding L  Livingstone M  Sachse K  Markey BK  Magnino S  Siarkou VI  Vretou E  Caro MR  Yaga R  Lainson FA  Smith DG  Wright F  Longbottom D 《Veterinary microbiology》2011,152(3-4):284-290

Torque teno viruses (TTVs) are vertebrate infecting, small viruses with circular single stranded DNA, classified in the Anelloviridae family. In pigs, two different TTV species have been described so far, Torque teno sus virus 1 (TTSuV1) and 2 (TTSuV2). TTSuVs have lately been linked to postweaning multisystemic wasting syndrome (PMWS). In the present study, TTSuV1 and TTSuV2 prevalence and DNA loads in longitudinally collected serum samples of healthy and PMWS affected pigs from Spanish conventional, multi-site farms were analyzed. Serum samples were taken at 1, 3, 7, 11 and around 15 weeks of age (age of PMWS outbreak) and viral DNA loads determined by quantitative PCR. For both TTSuV species, percentage of viremic pigs increased progressively over time, with the highest prevalence in animals of about 15 weeks of age. TTSuV1 and TTSuV2 viral DNA loads in healthy and TTSuV1 loads in PMWS affected animals increased until 11 weeks of age declining afterwards. On the contrary, TTSuV2 DNA loads in PMWS affected pigs increased throughout the sampling period. It seems that TTSuV species differ in the in vivo infection dynamics in PMWS affected animals.  相似文献   

Molecular cloning and tissue-specific expression of Toll-like receptor 5 gene from turkeys     

Gopinath VP  Biswas M  Raj GD  Raja A  Kumanan AK  Elankumaran S 《Avian diseases》2011,55(3):480-485

Toll-like receptors (TLRs), a family of transmembrane and cytosolic proteins, detect microbial patterns, initiating innate immune responses in various organisms. Although they are abundant, genetic characterization and functional differences of TLRs in economically important avian species such as chickens and turkeys have not been investigated in detail. In this study, the putative TLR5 coding region from turkey genome was sequenced, and its homology to other vertebrate species was analyzed. Secondary structure analysis revealed protein motifs typical of the chicken TLR5 protein structure, with 97% amino acid identity between them. mRNA expression profiling in adult turkeys revealed abundant TLR5 expression in a broad range of tissues. Stimulation with the TLR5 ligand flagellin resulted in the production of the inflammatory mediators interleukin (IL)-1beta, IL-6, and nitric oxide in peripheral blood mononuclear cells. To our knowledge, this is the first complete turkey TLR5 coding DNA sequence reported in sequence databases.  相似文献   

Incidence of different caterpillars on safflower and assessment of grain loss due to Prospalta conducta Walker (Lepidoptera: Noctuidae) in Karnataka,India     

P. Raja Sekhar  P. Shivarama Rai 《国际虫害防治杂志》2013,59(1)

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Analysis of Serum Cholesterol Level in Goats Breeds in Gilgit-Baltistan Area of Pakistan     

Akbar Khan  Shama Rehman  Raja Imran  Imtiaz Ahmed  khan Karim  Dad Pitafi 《农业科学与技术》2013,(4):302-306

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The Effect of Lactation on Post‐Partum Uterine Involution in Holstein Dairy Cows     

S Scully  V Maillo  P Duffy  AK Kelly  MA Crowe  D Rizos  P Lonergan 《Reproduction in domestic animals》2013,48(6):888-892

The objective was to examine the effect of lactation on uterine involution in post‐partum dairy cows. Holstein primiparous cows were used (n = 19, mean age: 3.9 ± 0.1 years). At calving, cows were randomly assigned to one of two treatment groups, lactating (n = 11) or non‐lactating (i.e. dried off at calving, n = 8). Examination of the reproductive tract was carried out by ultrasonography twice weekly until week 7 post‐partum. Blood samples were collected twice weekly for the analysis of progesterone to indicate the resumption of cyclicity and metabolites indicative of energy status. Uterine involution was assessed in terms of size of the uterine horns, uterine body diameter and uterine fluid volume as assessed by the amount of non‐echogenic material measured by ultrasound and position of the uterus. Vaginal mucous score was taken on day 28 post‐partum for the assessment of uterine inflammation. Resumption of cyclicity (serum progesterone > 1 ng/ml) had occurred in both groups on average by day 21 post‐partum. Concentrations of non‐esterified fatty acids and beta‐hydroxybutyrate were higher, whereas concentrations of glucose, insulin and IGF‐1 were lower (p < 0.05) in lactating compared to non‐lactating cows. Lactating cows had a smaller mean uterine body diameter (p < 0.05) than non‐lactating cows from days 28 to 42 post‐partum (day 28: 20.2 ± 1.3 vs 24.9 ± 1.5 mm, respectively) and had a lower mean uterine fluid volume up to day 49 (p < 0.05). By day 49, there was no difference in uterine diameter (15.2 ± 1.8 vs 15.2 ± 1.6 mm) or uterine fluid volume (0.11 ± 0.38 vs 0.18 ± 0.46) between lactating and non‐lactating cows, respectively. Vaginal mucous score revealed no evidence of uterine inflammation in either group. In conclusion, while lactation induced significant alterations in metabolic status, it did not have a major effect on the rate of uterine involution as defined in this study.  相似文献