Due to analytical similarities with the mycorrhizal glycoprotein glomalin, ubiquitous citrate and heat-extractable soil protein fractions have been assumed to be predominantly glomalin-stabilised within soil. Often termed glomalin-related soil protein (GRSP), little however is actually known of the “glomalin-purity” of these soil fractions. We undertook western and lectin blots and crossed immuno/lectin affinity electrophoresis (CIE/CLAE) analysis of “easily extractible” GRSP fractions, as well as liquid chromatography-tandem mass spectrometry (LC–MS/MS) of “total” GRSP fractions. To further test whether soil saprobes contribute to GRSP production, we amended soil with 14C-sucrose and examined whether 14C could be traced in the GRSP pool over a 500-day incubation period.While only four of six bands on SDS–PAGE profiles of easily extracted GRSP reacted with anti-glomalin MAb32B11 and the lectin Con A under our blotting conditions, CIE/CLAE indicated the presence of a single protein moiety in the easily extractible GRSP pool. LC–MS/MS analysis of total GRSP pooled from various soils also showed that although traces of protein tentatively assignable to soil bacteria were present in GRSP, their concentrations were low. Additionally, specific activity of total GRSP in 14C-labelled soil was relatively depleted compared to the bulk soil and soil microbial biomass. This suggests that little GRSP of heterotrophic origin was laid down over the incubation period, although the potential presence of a pre-existing 14C-free GRSP background, as well as of low microbial dynamics in the absence of any further substrate inputs to the soil warrant caution with this inference. 相似文献
Seventy-six farmers' varieties of sorghum from Benin were distinguished by amplified fragment length polymorphism (AFLP) and clustered into 45 distinct genotypes. The genotype clusters were evaluated for their Fe, Zn, and phytate concentrations to assess the impact of genetic and environmental effects on the composition of the grains and to identify farmers' varieties with high potential Fe and Zn availability. The Fe concentration of the grains ranged from 30 to 113 mg/kg with an average of 58 mg/kg. The Zn concentration ranged from 11 to 44 mg/kg with an average of 25 mg/kg. The phytate concentration of the grain ranged from 0.4 to 3.5% with a mean of 1.2%. The grain-Fe and grain-Zn did not show consistent linkage to genetic variation, but varied significantly across field locations, suggesting a predominant environmental impact. The phytate concentration of the grains appeared to be environmentally as well as genetically determined. No varieties provide adequate Zn to meet nutritional requirements of sorghum consumers. The most promising varieties for Fe supply were tokogbessenou, mahi swan, biodahu, sa? ma?, mare dobi, sakarabokuru, and chabicouma, as they showed a [phytate]/[Fe] ratio of <14, which is the critical value above which Fe availability is strongly impaired. These varieties could therefore be recommended for the preparation of food products such as dibou, in which processing methods have only a slight diminishing effect on phytate levels. Further research is needed to test these varieties for the stability of [phytate]/[Fe] molar ratio across various environmental conditions. 相似文献
The development of an analytical method using 1H nuclear magnetic resonance (1H NMR) spectrometry to monitor cupuassu (Theobroma grandiflorum Spreng) bean fermentation, drying, and roasting processes is reported. The analysis of organic acids and alcohols of crude water extracts of cupuassu ground kernels were monitored by HPLC and 1H NMR spectroscopy. The residual protein signals caused deleterious effects on acid and alcohol quantifications. Therefore, the analytical procedures were optimized by sample cleanup and water suppression pulse sequences in order to obtain compatible data using HPLC and 1H NMR. The quantification of lactic acid, acetic acid, and 2,3-butanediol by NMR is 5- to 10-fold faster than by HPLC, with the advantage of providing the identification of several chemical species in a single experiment. Application of these analytical conditions to some cupuassu samples revealed that this methodology can be applied to the quality profiles of fermentation and roasting processes. 相似文献
A comparison of the culturable microbiota present in the different compartments of a great scallop (Pecten maximus) hatchery with two experimental production systems, FTS and RAS, throughout a cycle of larval rearing was carried out. All isolates obtained from broodstock gonads, larvae, tank water, biofilm, microalgae, UV‐treated water and biofilter in both systems at three sampling times were characterized by biochemical tests and identified by sequencing of the 16S rRNA gene. Some of the genera were found to be exclusive of broodstock gonads, such as Sinobacterium, Kordia or Microbulbifer, and differences between gonad microbiota before and after spawning were detected. The number of morphotypes obtained in water, larvae and biofilm was similar in both systems, as well as the behaviour of the microbial populations in almost all hatchery compartments, in which Vibrio, Neptuniibacter, Pseudoalteromonas and Shewanella were the most common genera. The diversity obtained was analysed using the principal component analysis (PCA) and Fisher's exact test, showing that the microbial communities present in the common compartments between FTS and RAS did not significantly differ. These results suggest that, at least from a microbiological point of view, the recirculation system could be a good alternative for the production of scallop larvae. 相似文献
The objective of this study was to determine the long-term environmental changes induced by ancient landslide in the mountain fen. Attempts were made to demonstrate the progress of the soil cover restoration process about 200 years after the landslides and associated with changes in vegetation and soil microarthropod biodiversity and occurrence pattern associated with the restoration of soil cover.
Material and methods
The study covered mountain fen of the Caltho-Alnetum in the Babiogórski National Park in Outer Flysch Carpathians, Poland, where ancient landslide deposits are causing disturbance in fen hydrologic regime and over time related to various rate of fen area natural restoration processes. The drill test has been used to assess changes in layering and thickness of the fen soils. The following soil parameters, such as pH and total organic carbon content, were determined at each distinguish layer. The diversity and distribution pattern of soil microarthropods, represented by Collembola, was examined in two parts of the fen: restored and not-restored. The soil parameters, such as pH, electrical conductivity, total exchangeable base, total organic carbon, and nitrogen content, were determined in the soil samples simultaneously. The assessment of the vegetation structure recovery within studied mountain fen after landslide was referred to average parameters of the community completed for other natural mountain fens under the Caltho-Alnetum community. The research results were statistically verified.
Results and discussion
The test drillings showed that landslides change soil layering, site-specific soil properties of mountain fen such as chemistry (the statistically significant differences were noted only in the case of total organic carbon content), vegetation structure, and soil microarthropod communities. By changing site-specific conditions, landslides influence on the biodiversity and peatland ecosystems functioning.
Conclusion
Our results clearly demonstrate that the landslide itself initiated a complex and lengthy process of changes in biological aspects of peatlands including the biodiversity of the underground fauna and plant community. Soil microarthropod communities represented by Collembola can be used as a good indicator of mountain fen restoration process.
Methods for detecting contemporary, fine-scale population genetic structure in continuous populations are scarce. Yet such methods are vital for ecological and conservation studies, particularly under a changing landscape.
Objectives
Here we present a novel, spatially explicit method that we call landscape relatedness (LandRel). With this method, we aim to detect contemporary, fine-scale population structure that is sensitive to spatial and temporal changes in the landscape.
Methods
We interpolate spatially determined relatedness values based on SNP genotypes across the landscape. Interpolations are calculated using the Bayesian inference approach integrated nested Laplace approximation. We empirically tested this method on a continuous population of brown bears (Ursus arctos) spanning two counties in Sweden.
Results
Two areas were identified as differentiated from the remaining population. Further analysis suggests that inbreeding has occurred in at least one of these areas.
Conclusions
LandRel enabled us to identify previously unknown fine-scale structuring in the population. These results will help direct future research efforts, conservation action and aid in the management of the Scandinavian brown bear population. LandRel thus offers an approach for detecting subtle population structure with a focus on contemporary, fine-scale analysis of continuous populations.
