Selective charging of tRNA isoacceptors explains patterns of codon usage     

Elf J  Nilsson D  Tenson T  Ehrenberg M 《Science (New York, N.Y.)》2003,300(5626):1718-1722

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Modulation of postendocytic sorting of G protein-coupled receptors   总被引：1，自引：0，他引：1  

Whistler JL  Enquist J  Marley A  Fong J  Gladher F  Tsuruda P  Murray SR  Von Zastrow M 《Science (New York, N.Y.)》2002,297(5581):615-620

Recycling of the mu opioid receptor to the plasma membrane after endocytosis promotes rapid resensitization of signal transduction, whereas targeting of the delta opioid receptor (DOR) to lysosomes causes proteolytic down-regulation. We identified a protein that binds preferentially to the cytoplasmic tail of the DOR as a candidate heterotrimeric GTP-binding protein (G protein)-coupled receptor-associated sorting protein (GASP). Disruption of the DOR-GASP interaction through receptor mutation or overexpression of a dominant negative fragment of GASP inhibited receptor trafficking to lysosomes and promoted recycling. The GASP family of proteins may modulate lysosomal sorting and functional down-regulation of a variety of G protein-coupled receptors.  相似文献   

Microbial community composition and carbon cycling within soil microenvironments of conventional, low-input, and organic cropping systems   总被引：1，自引：0，他引：1  

Kong AY  Scow KM  Córdova-Kreylos AL  Holmes WE  Six J 《Soil biology & biochemistry》2011,43(1):20-30

This study coupled stable isotope probing with phospholipid fatty acid analysis (¹³C-PLFA) to describe the role of microbial community composition in the short-term processing (i.e., C incorporation into microbial biomass and/or deposition or respiration of C) of root- versus residue-C and, ultimately, in long-term C sequestration in conventional (annual synthetic fertilizer applications), low-input (synthetic fertilizer and cover crop applied in alternating years), and organic (annual composted manure and cover crop additions) maize-tomato (Zea mays - Lycopersicum esculentum) cropping systems. During the maize growing season, we traced ¹³C-labeled hairy vetch (Vicia dasycarpa) roots and residues into PLFAs extracted from soil microaggregates (53-250 μm) and silt-and-clay (<53 μm) particles. Total PLFA biomass was greatest in the organic (41.4 nmol g⁻¹ soil) and similar between the conventional and low-input systems (31.0 and 30.1 nmol g⁻¹ soil, respectively), with Gram-positive bacterial PLFA dominating the microbial communities in all systems. Although total PLFA-C derived from roots was over four times greater than from residues, relative distributions (mol%) of root- and residue-derived C into the microbial communities were not different among the three cropping systems. Additionally, neither the PLFA profiles nor the amount of root- and residue-C incorporation into the PLFAs of the microaggregates were consistently different when compared with the silt-and-clay particles. More fungal PLFA-C was measured, however, in microaggregates compared with silt-and-clay. The lack of differences between the mol% within the microbial communities of the cropping systems and between the PLFA-C in the microaggregates and the silt-and-clay may have been due to (i) insufficient differences in quality between roots and residues and/or (ii) the high N availability in these N-fertilized cropping systems that augmented the abilities of the microbial communities to process a wide range of substrate qualities. The main implications of this study are that (i) the greater short-term microbial processing of root- than residue-C can be a mechanistic explanation for the higher relative retention of root- over residue-C, but microbial community composition did not influence long-term C sequestration trends in the three cropping systems and (ii) in spite of the similarity between the microbial community profiles of the microaggregates and the silt-and-clay, more C was processed in the microaggregates by fungi, suggesting that the microaggregate is a relatively unique microenvironment for fungal activity.  相似文献   

Protection of soil carbon by microaggregates within earthworm casts     

Heleen Bossuyt  Johan Six 《Soil biology & biochemistry》2005,37(2):251-258

Earthworms are known to play a role in aggregate formation and soil organic matter (SOM) protection. However, it is still unclear at what scale and how quickly earthworms manage to protect SOM. We investigated the effects of Aporrectodea caliginosa on aggregation and aggregate-associated C pools using ¹³C-labeled sorghum (Sorghum bicolor (L.) Moench) leaf residue. Two incubations were set up. The first incubation consisted of soil samples crushed <250 μm to break up all macroaggregates with three treatments: (i) control soil; (ii) soil+¹³C-labeled residue and (iii) soil+¹³C-labeled residue+earthworms. Earthworms were added after 8 d and 12 d (days) later, aggregate size distribution was measured together with total C and ¹³C in each aggregate fraction. A second incubation was made to assay protected versus unprotected total C and ¹³C from 21-d laboratory incubations of intact and crushed large (>2000 μm) and small (250-2000 μm) macroaggregates and microaggregates (53-250 μm). Eight different pools of aggregate-associated C were quantified: (1) and (2) unprotected C pools in large and small macroaggregates, (3) unprotected C pools in microaggregates, (4) and (5) protected C pools in large and small macroaggregates, (6) protected C pool in microaggregates, and (7) and (8) protected C pools in microaggregates within large and small macroaggregates. In the presence of earthworms, a higher proportion of large macroaggregates was newly formed and these aggregates contained more C and ¹³C compared to bulk soil. There were no significant differences between the samples with or without earthworms in the C pool-sizes protected by macroaggregates, microaggregates or microaggregates within small macroaggregates. However, in the presence of earthworms, the C protected by microaggregates within large macroaggregates was a significant pool and 22% of this C pool was newly added C. In conclusion, these results clearly indicate the direct involvement of earthworms in providing protection of soil C in microaggregates within large macroaggregates leading to a possible long-term stabilization of soil C.  相似文献   

UN ECE ICP Materials: Dose-Response Functions on Dry and Wet Acid Deposition Effects After 8 Years of Exposure     

Johan Tidblad  Vladimir Kucera  Alexandre A. Mikhailov  Jan Henriksen  Katerina Kreislova  Tim Yates  Bruno Stöckle  Manfred Schreiner 《Water, air, and soil pollution》2001,130(1-4):1457-1462

The main results of the International Co-operative Programme on Effects on Materials, including Historic and Cultural Monuments (ICP Materials) within the United Nations Economic Commission for Europe (UN ECE) are summarised. The 8-year field exposure programme involves 39 test sites in 12 European countries and in the United States and Canada. Dose-response functions (DRF) expressing the effect of dry and wet deposition as individual terms have been obtained for a wide range of materials including bronze, copper, weathering steel, zinc, aluminium, nickel, tin, stone materials, paint coatings and glass materials. The DRF's includes parameters that are easily available on different geographical scales and can be used for mapping areas of increased corrosion rates and for calculation of costs.  相似文献   

Conformational states of sunflower (Helianthus annuus) Helianthinin: effect of heat and pH     

González-Pérez S  Vereijken JM  Merck KB  van Koningsveld GA  Gruppen H  Voragen AG 《Journal of agricultural and food chemistry》2004,52(22):6770-6778

The structure and solubility of helianthinin, the most abundant protein of sunflower seeds, was investigated as a function of pH and temperature. Dissociation of the 11S form (hexamer) into the 7S form (trimer) gradually increased with increasing pH from 5.8 to 9.0. High ionic strength (I = 250 mM) stabilizes the 11S form at pH > 7.0. Heating and low pH resulted in dissociation into the monomeric constituents (2-3S). Next, the 7S and 11S forms of helianthinin were isolated and shown to differ in their secondary and tertiary structure, and to have denaturation temperatures (T(d)) of 65 and 90 degrees C, respectively. Furthermore, the existence of two populations of the monomeric form of helianthinin with denaturation temperatures of 65 and 90 degrees C was described. This leads to the hypothesis that helianthinin can adopt two different conformational states: one with T(d) = 65 degrees C and a second with T(d) = 90 degrees C.  相似文献   

Emission Inventories for SO2 and NOx in Developing Country Regions in 1995 with Projected Emissions for 2025 According to Two Scenarios     

Vallack  Harry W.  Cinderby  Steve  Kuylenstierna  Johan C.I.  Heaps  Charles 《Water, air, and soil pollution》2001,130(1-4):217-222

Water, Air, &; Soil Pollution - Top-down inventories of anthropogenic SO2 and NOx emissions were compiled for 1995 for developing country regions. Regional emission factors were used to generate...  相似文献   

Statistical Modeling of the Partitioning of Nonylphenol in Soil     

Sebastian Krahe  Rolf-Alexander Düring  Johan A. Huisman  Andreas L. Horn  Stefan Gäth 《Water, air, and soil pollution》2006,172(1-4):221-237

Partition coefficients K _P of nonylphenol (NP) in soil were determined for 193 soil samples which differed widely in content of soil organic carbon (SOC), hydrogen activity, clay content, and in the content of dissolved organic carbon (DOC). By means of multiple linear regression analysis (MLR), pedotransfer functions were derived to predict partition coefficients from soil data. SOC and pH affected the sorption, though the latter was in a range significantly below the pK_a of NP. Quality of soil organic matter presumably plays an important but yet not quantified role in sorption of NP. For soil samples with SOC values less than 3 g kg^?1, model prediction became uncertain with this linear approach. We suggest that using only SOC and pH data results in good prediction of NP sorption in soils with SOC higher than 3 g kg^?1. Considering the varying validity of the linear model for different ranges of the most sensitive parameter SOC, a more flexible, nonlinear approach was tested. The application of an artificial neuronal network (ANN) to predict sorption of NP in soils showed a sigmoidal relation between K _P and SOC. The nonlinear ANN approach provided good results compared to the MLR approach and represents an alternative tool for prediction of NP partitioning coefficients.  相似文献   

Do effects of soil compaction persist after ploughing? Results from 21 long-term field experiments in Sweden     

Johan Arvidsson  Inge Hkansson 《Soil & Tillage Research》1996,39(3-4):175-197

The extent and persistence of the effect of soil compaction in a system with annual ploughing were investigated in 21 long-term field experiments in Sweden with a total of 259 location-years. Crop yield, soil physical properties and plant establishment were determined. All experiments had two common treatments: control (no extra traffic) and compacted (350 Mg km ha⁻¹ of experimental traffic in the autumn prior to ploughing), using a tractor and trailer with traditional wheel equipment and an axle load restricted to 4 Mg. During the rest of the year, both treatments were conventionally and equally tilled. The compaction was repeated each autumn for at least 7 years, and the yield was determined each year until 5 years after the termination of the compaction treatment.

Compaction decreased the porosity and the proportion of large pores and increased the tensile strength of dry aggregates. On clay and loam soils, it decreased the proportion of fine aggregates in the seedbed and the gravimetric soil water content in the seedbed.

The yield in the compacted treatment declined compared with the control during the first 4 years, after which it reached steady state. During this steady state, the compaction treatment caused a yield loss of 11.4%, averaged over 107 location-years. Within 4–5 years after the termination of the compaction treatment, the yield returned to the control level. The average yield loss at individual sites increased with increasing clay content.

Results from additional treatments indicated that yield loss was linearly correlated with the amount of traffic up to 300–400 Mg km ha⁻¹. With greater ground contact pressure or a greater soil water content at time of traffic, there was a greater yield loss.

Soil compaction effects on yield were similar for all spring-sown crops, and the percentage yield loss seemed to be independent of the yield. In a few location-years with winter wheat there was on average no yield decrease.

There were 5.1% less plants in the compacted treatment than in the control. The yield decrease was significantly correlated with the number of plants.

Between years results were highly variable, and no consistent correlations between yield loss and soil water content at the time of traffic or the weather conditions during the growing period were found. Soil compaction affected yield during years with good as well as poor conditions for crop growth.  相似文献   

Effects of autumn tillage and residue management on soil respiration in a long‐term field experiment in Sweden          下载免费PDF全文

Veera Kainiemi  Johan Arvidsson  Thomas Kätterer 《植物养料与土壤学杂志》2015,178(2):189-198

Several previous field studies in temperate regions have shown decreased soil respiration after conventional tillage compared with reduced or no‐tillage treatments. Whether this decrease is due to differences in plant residue distribution or changes in soil structure following tillage remains an open question. This study investigated (1) the effects of residue management and incorporation depth on soil respiration and (2) biological activity in different post‐tillage aggregates representing the actual size and distribution of aggregates observed in the tilled layer. The study was conducted within a long‐term tillage experiment on a clay soil (Eutric Cambisol) in Uppsala, Sweden. After 38 y, four replicate plots in two long‐term treatments (moldboard plowing (MP) and shallow tillage (ST)) were split into three subplots. These were then used for a short‐term trial in which crop residues were either removed, left on the surface or incorporated to about 6 cm depth (ST) or at 20 cm depth (MP). Soil respiration, soil temperature, and water content were monitored during a 10‐d period after tillage treatment. Respiration from aggregates of different sizes produced by ST and MP was also measured at constant water potential and temperature in the laboratory. The results showed that MP decreased short‐term soil respiration compared with ST or no tillage. Small aggregates (< 16 mm) were biologically most active, irrespective of tillage method, but due to their low proportion of total soil mass they contributed < 1.5% to total respiration from the tilled layer. Differences in respiration between tillage treatments were found to be attributable to indirect effects on soil moisture and temperature profiles and the depth distribution of crop residues, rather than to physical disturbance of the soil.  相似文献