Genetic structure, population dynamics, and conservation of Black caiman (Melanosuchus niger)     

Benoit de Thoisy  Tomas Hrbek  Izeni Pires Farias  Anne Lavergne 《Biological conservation》2006,133(4):474-482

Microsatellite DNA polymorphisms were screened in seven populations of the largest Neotropical predator, the Black caiman Melanosuchus niger (n = 169), originating from Brazil, French Guiana and Ecuador. Eight loci were used, for a total of 62 alleles. The Ecuadorian population had the lowest number of alleles, heterozygosity and gene diversity; populations of the Guianas region exhibited intermediate diversities; highest values were recorded in the two populations of the Amazon and Rio Negro. During the last century Melanosuchus populations have been reduced to 1-10% of their initial levels because of hunting pressure, but no strong loss of genetic diversity was observed. Both the inter-locus g-test and the Pk distribution suggested no recent important recovery and/or expansion of current populations. On a global scale, the inter-population variation of alleles indicated strong differentiation (F_ST = 0.137).Populations were significantly isolated from each other, with rather limited gene flow; however, these gene flow levels are sufficiently high for recolonization processes to effectively act at regional scales. In French Guiana, genetic structuring is observed between populations of two geographically close but ecologically distinct habitats, an estuary and a swamp. Similar divergence is observed in Brazil between geographically proximate “black water” and “white water” populations. As a consequence, the conservation strategy of the Black caiman should include adequate ecosystem management, with strong attention to preservation of habitat integrity. Distribution of genetic diversity suggests that current populations originated from the central Amazonian region. Dispersal of the species may thus have been deeply influenced by major climatic changes during the Holocene/Pleistocene period, when the Amazonian hydrographic networks were altered. Major ecological changes such as glaciations, marine transgressions and a hypothesized presence of an Amazonian Lake could have resulted in extension of Black caiman habitats followed by isolation.  相似文献   

Periodontal disease in free-ranging koalas (Phascolarctos cinereus) from the Mount Lofty Ranges,South Australia,and its association with koala retrovirus infection     

RG Butcher  LM Pettett  J Fabijan  E Ebrahimie  M Mohammadi-Dehcheshmeh  KN Speight  WSJ Boardman  PS Bird  DJ Trott 《Australian veterinary journal》2020,98(5):200-206

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Fatty acid,chemical, and tissue composition of meat comparing Santa Inês breed sheep and Boer crossbreed goats submitted to different supplementation strategies     

Gama  Kallidiane Vaneska Mendes Fernandes  Pereira Filho  José Morais  Soares  Rafael Farias  Cordão  Maiza Araújo  Cézar  Marcílio Fontes  Batista  Ana Sancha Malveira  de Azevedo Silva  Aderbal Marcos  Madruga  Marta Suely  Oliveira  Ronaldo Lopes  Bezerra  Leilson Rocha 《Tropical animal health and production》2020,52(2):601-610

Tropical Animal Health and Production - To compare the fatty acid (FA) composition, and chemical and tissue composition of meat, 24 uncastrated males, 12 sheep of the Santa Inês breed, and 12...  相似文献   

A truncated retrotransposon disrupts the GRM1 coding sequence in Coton de Tulear dogs with Bandera's neonatal ataxia     

Zeng R  Farias FH  Johnson GS  McKay SD  Schnabel RD  Decker JE  Taylor JF  Mann CS  Katz ML  Johnson GC  Coates JR  O'Brien DP 《Journal of veterinary internal medicine / American College of Veterinary Internal Medicine》2011,25(2):267-272

Background: Bandera's neonatal ataxia (BNAt) is an autosomal recessive cerebellar ataxia that affects members of the Coton de Tulear dog breed. Objective: To identify the mutation that causes BNAt. Animals: The study involved DNA from 112 Cotons de Tulear (including 15 puppies with signs of BNAt) and 87 DNA samples from dogs of 12 other breeds. Methods: The BNAt locus was mapped with a genome‐wide association study (GWAS). The coding exons of positional candidate gene GRM1, which encodes metabotropic glutamate receptor 1, were polymerase chain reaction (PCR)‐amplified and resequenced. A 3‐primer PCR assay was used to genotype individual dogs for a truncated retrotransposon inserted into exon 8 of GRM1. Results: The GWAS indicated that the BNAt locus was in a canine chromosome 1 region that contained candidate gene GRM1. Resequencing this gene from BNAt‐affected puppies indicated that exon 8 was interrupted by the insertion of a 5′‐truncated retrotransposon. All 15 BNAt‐affected puppies were homozygous for the insert, whereas all other Cotons de Tulear were heterozygotes (n = 43) or homozygous (n = 54) for the ancestral allele. None of the 87 dogs from 12 other breeds had the insertion allele. Conclusions and Clinical Importance: BNAt is caused by a retrotransposon inserted into exon 8 of GRM1. A DNA test for the GRM1 retrotransposon insert can be used for genetic counseling and to confirm the diagnosis of BNAt.  相似文献   

Intraspecific sequence variation in 16S rRNA gene of Ureaplasma diversum isolates     

Marques LM  Buzinhani M  Guimaraes AM  Marques RC  Farias ST  Neto RL  Yamaguti M  Oliveira RC  Timenetsky J 《Veterinary microbiology》2011,152(1-2):205-211

Ureaplasma diversum infection in bulls may result in seminal vesiculitis, balanoposthitis and alterations in spermatozoids. In cows, it can cause placentitis, fetal alveolitis, abortion and the birth of weak calves. U. diversum ATCC 49782 (serogroups A), ATCC 49783 (serogroup C) and 34 field isolates were used for this study. These microorganisms were submitted to Polymerase Chain Reaction for 16S gene sequence determination using Taq High Fidelity and the products were purified and bi-directionally sequenced. Using the sequence obtained, a fragment containing four hypervariable regions was selected and nucleotide polymorphisms were identified based on their position within the 16S rRNA gene. Forty-four single nucleotide polymorphisms (SNP) were detected. The genotypic variability of the 16S rRNA gene of U. diversum isolates shows that the taxonomy classification of these organisms is likely much more complex than previously described and that 16S rRNA gene sequencing may be used to suggest an epidemiologic pattern of different origin strains.  相似文献   

The Morphogenesis of Bands and Zonal Winds in the Atmospheres on the Giant Outer Planets     

JYK Cho  LM Polvani 《Science (New York, N.Y.)》1996,273(5273):335-337

The atmospheres of Jupiter, Saturn, Uranus, and Neptune were modeled as shallow layers of turbulent fluid overlying a smooth, spherical interior. With only the observed values of radius, rotation rate, average wind velocity, and mean layer thickness as model parameters, bands and jets spontaneously emerged from random initial conditions. The number, width, and amplitude of the jets, as well as the dominance of anticyclonic vortices, are in good agreement with observations for all four planets.  相似文献   

Strategies for monitoring within-field soybean yield using Sentinel-2 Vis-NIR-SWIR spectral bands and machine learning regression methods     

Crusiol  L. G.T.  Sun  Liang  Sibaldelli  R. N.R.  Junior  V. Felipe  Furlaneti  W. X.  Chen  R.  Sun  Z.  Wuyun  D.  Chen  Z.  Nanni  M. R.  Furlanetto  R. H.  Cezar  E.  Nepomuceno  A. L.  Farias  J. R.B. 《Precision Agriculture》2022,23(3):1093-1123

Soybean crop plays an important role in world food production and food security, and agricultural production should be increased accordingly to meet the global food demand. Satellite remote sensing data is considered a promising proxy for monitoring and predicting yield. This research aimed to evaluate strategies for monitoring within-field soybean yield using Sentinel-2 visible, near-infrared and shortwave infrared (Vis/NIR/SWIR) spectral bands and partial least squares regression (PLSR) and support vector regression (SVR) methods. Soybean yield maps (over 500 ha) were recorded by a combine harvester with a yield monitor in 15 fields (3 farms) in Paraná State, southern Brazil. Sentinel-2 images (spectral bands and 8 vegetation indices) across a cropping season were correlated to soybean yield. Information pooled across the cropping season presented better results compared to single images, with best performance of Vis/NIR/SWIR spectral bands under PLSR and SVR. At the grain filling stage, field-, farm- and global-based models were evaluated and presented similar trends compared to leaf-based hyperspectral reflectance collected at the Brazilian National Soybean Research Center. SVR outperformed PLSR, with a strong correlation between observed and predicted yield. For within-field soybean yield mapping, field-based SVR models (developed individually for each field) presented the highest accuracies. The results obtained demonstrate the possibility of developing within-field yield prediction models using Sentinel-2 Vis/NIR/SWIR bands through machine learning methods.

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Quantile regression: prediction of growth and yield for a eucalyptus plantation in northeast Brazil     

Farias  Aline Araújo  Soares  Carlos Pedro Boechat  Leite  Helio Garcia  da Silva  Gilson Fernandes 《European Journal of Forest Research》2021,140(4):983-989

European Journal of Forest Research - Regression analysis is a traditional technique to fit equations and predict tree and forest attributes. However, problems may occur when the data show high...  相似文献   

Evaluation of Macroalgae Sulfated Polysaccharides on the Leishmania (L.) amazonensis Promastigote     

Camila Lehnhardt Pires  Selma Dzimidas Rodrigues  Daniel Bristot  Henrique Hessel Gaeta  Daniela de Oliveira Toyama  Wladimir Ronald Lobo Farias  Marcos Hikari Toyama 《Marine drugs》2013,11(3):934-943

The sulfated polysaccharides from Solieria filiformis (Sf), Botryocladia occidentalis (Bo), Caulerpa racemosa (Cr) and Gracilaria caudata (Gc) were extracted and extensively purified. These compounds were then subjected to in vitro assays to evaluate the inhibition of these polysaccharides on the growth of Leishmania (L.) amazonensis promastigotes. Under the same assay conditions, only three of the four sulfated polysaccharides were active against L. amazonensis, and the polysaccharide purified from Cr was the most potent (EC₅₀ value: 34.5 μg/mL). The polysaccharides derived from Bo and Sf demonstrated moderate anti-leishmanial activity (EC₅₀ values of 63.7 μg/mL and 137.4 μg/mL). In addition, we also performed in vitro cytotoxic assays toward peritoneal macrophages and J774 macrophages. For the in vitro cytotoxicity assay employing J774 cells, all of the sulfated polysaccharides decreased cell survival, with CC₅₀ values of 27.3 μg/mL, 49.3 μg/mL, 73.2 μg/mL, and 99.8 μg/mL for Bo, Cr, Gc, and Sf, respectively. However, none of the sulfated polysaccharides reduced the cell growth rate of the peritoneal macrophages. These results suggest that macroalgae contain compounds with various chemical properties that can control specific pathogens. According to our results, the assayed sulfated polysaccharides were able to modulate the growth rate and cell survival of Leishmania (L.) amazonensis promastigotes in in vitro assays, and these effects involved the interaction of the sulfated polysaccharides on the cell membrane of the parasites.  相似文献   

Effects of Retinoids on the In Vitro Development of Capra Hircus Embryos to Blastocysts in Two Different Culture Systems     

A Chiamenti  CR Aguiar Filho  LM Freitas Neto  RM Chaves  FF Paula‐Lopes  PF Lima  PBD Gonçalves  MAL Oliveira 《Reproduction in domestic animals》2010,45(5):e68-e72

The objective of this study was to evaluate the effect of retinol (RT) and retinoic acid (RA) on the in vitro development of pre‐implantation goat embryos cultured in potassium simplex optimized medium or synthetic oviduct fluid or cocultured in oviductal cells monolayer either in potassium simplex optimized medium or synthetic oviduct fluid. A total of 2407 cumulus‐oocyte complexes were aspirated from 2 to 6 mm ovarian follicles from slaughtered animals. Selected cumulus‐oocyte complexes were subjected to in vitro maturation in TCM 199 for 24 h at 39°C in an atmosphere of 5% (v/v) CO₂ in humidified air. In vitro fertilization was performed in modified defined medium. Eighteen hours after in vitro fertilization, cumulus cells were removed and presumptive zygotes were randomly distributed into experimental groups. In Experiment 1, presumptive zygotes were cultured in potassium simplex optimized medium, potassium simplex optimized medium + RT, potassium simplex optimized medium + retinoic acid, synthetic oviduct fluid, synthetic oviduct fluid + RT and synthetic oviduct fluid + RA at 39°C in a humidified atmosphere of 5% (v/v) CO₂, 5% (v/v) O₂ and 90% (v/v) N₂. In Experiment 2, presumptive zygotes were cocultured in potassium simplex optimized medium + oviductal cells monolayer, potassium simplex optimized medium + RT + oviductal cells monolayer, potassium simplex optimized medium + RA + oviductal cells monolayer, synthetic oviduct fluid + oviductal cells monolayer, synthetic oviduct fluid + RT + oviductal cells monolayer and synthetic oviduct fluid + RA + oviductal cells monolayer in an atmosphere of 5% (v/v) CO₂ in humidified air. In both experiments, media were partially changed on day 2 after in vitro fertilization and unfertilized oocytes were excluded from the experiment. Embryos were cultured or cocultured for 8 days. In Experiment 1, there was no effect of RT or RA supplementation on the proportion of oocytes that reached the morula or blastocyst stages. By contrast, Experiment 2 demonstrated that the addition of 0.28 μg/ml RT and 0.5 μm RA to the embryo culture media stimulated (p < 0.05) development to the morula and blastocyst stages under the coculture conditions tested. In conclusion, retinoids play an important role in pre‐implantation development of goat embryos and can be used to enhance in vitro embryo production.  相似文献