Molecular mapping of quantitative trait loci for domestication traits and β-glucan content in a wheat recombinant inbred line population     

Alagu?Manickavelu  Kanako?Kawaura  Hisako?Imamura  Michiko?Mori  Yasunari?OgiharaEmail author 《Euphytica》2011,177(2):179-190

Genetic maps are useful for analysis of quantitative trait loci (QTLs) and for marker-assisted selection (MAS) in breeding. A simple sequence repeat (SSR) marker linkage map of common wheat was constructed based on recombination inbred lines (RILs) derived from a cross between Chinese Spring and spelt wheat. The map included 264 loci on all wheat chromosomes covering 2,345.2 cM with 962, 794.6, and 588.6 cM for the A, B, and D genomes, respectively. Using the RILs and the map, we detected 42 putative QTLs on 15 chromosomes for ear length, spikelet number, spike compactness, kernel length, kernel width, kernel height and β-glucan content. Each QTL explained 4–45% of the phenotypic variation. Five QTL cluster regions were detected on chromosomes 1A, 5AL, 2B, 2D, and 4D. The first QTLs for β-glucan content in wheat were identified on chromosomes 3A, 1B, 5B, and 6D.  相似文献   

Chondrulelike objects in short-period comet 81P/Wild 2   总被引：1，自引：0，他引：1  

Nakamura T  Noguchi T  Tsuchiyama A  Ushikubo T  Kita NT  Valley JW  Zolensky ME  Kakazu Y  Sakamoto K  Mashio E  Uesugi K  Nakano T 《Science (New York, N.Y.)》2008,321(5896):1664-1667

The Stardust spacecraft returned cometary samples that contain crystalline material, but the origin of the material is not yet well understood. We found four crystalline particles from comet 81P/Wild 2 that were apparently formed by flash-melting at a high temperature and are texturally, mineralogically, and compositionally similar to chondrules. Chondrules are submillimeter particles that dominate chondrites and are believed to have formed in the inner solar nebula. The comet particles show oxygen isotope compositions similar to chondrules in carbonaceous chondrites that compose the middle-to-outer asteroid belt. The presence of the chondrulelike objects in the comet suggests that chondrules have been transported out to the cold outer solar nebula and spread widely over the early solar system.  相似文献   

Split luciferase complementation assay to detect regulated protein-protein interactions in rice protoplasts in a large-scale format     

Yukichi Fujikawa  Takahiro Nakanishi  Hiroko Kawakami  Kanako Yamasaki  Masa H Sato  Hiroyuki Tsuji  Makoto Matsuoka  Naohiro Kato 《Rice》2014,7(1):11

Background

The rice interactome, in which a network of protein-protein interactions has been elucidated in rice, is a useful resource to identify functional modules of rice signal transduction pathways. Protein-protein interactions occur in cells in two ways, constitutive and regulative. While a yeast-based high-throughput method has been widely used to identify the constitutive interactions, a method to detect the regulated interactions is rarely developed for a large-scale analysis.

Results

A split luciferase complementation assay was applied to detect the regulated interactions in rice. A transformation method of rice protoplasts in a 96-well plate was first established for a large-scale analysis. In addition, an antibody that specifically recognizes a carboxyl-terminal fragment of Renilla luciferase was newly developed. A pair of antibodies that recognize amino- and carboxyl- terminal fragments of Renilla luciferase, respectively, was then used to monitor quality and quantity of interacting recombinant-proteins accumulated in the cells. For a proof-of-concept, the method was applied to detect the gibberellin-dependent interaction between GIBBERELLIN INSENSITIVE DWARF1 and SLENDER RICE 1.

Conclusions

A method to detect regulated protein-protein interactions was developed towards establishment of the rice interactome.  相似文献   

Inoculation with N2-generating denitrifier strains mitigates N2O emission from agricultural soil fertilized with poultry manure     

Tomoyasu Nishizawa  Aihua Quan  Ayaaki Kai  Kanako Tago  Satoshi Ishii  Weishou Shen  Kazuo Isobe  Shigeto Otsuka  Keishi Senoo 《Biology and Fertility of Soils》2014,50(6):1001-1007

Pelleted poultry manure is recommended for use with agricultural soil as a replacement for chemical fertilizers; however, application of the manure stimulates nitrous oxide (N₂O) emission from the soil through denitrification. To mitigate the N₂O emission caused by application of pelleted poultry manure, soil microcosms were set up; each microcosm was inoculated with one of the following N₂-generating denitrifier strains previously been isolated from paddy soil: Azoarcus, Dyella, Dechloromonas, Niastella, and Burkholderia. When pelleted poultry manure was incubated on its own, N₂O was produced by denitrification. In contrast, N₂O emission was significantly lowered when the manure was inoculated with most of the N₂-generating strains. In soil microcosms, N₂O was emitted during incubation after application of the pelleted manure, while N₂O flux was significantly lowered when the soil was inoculated with Azoarcus sp. KS11B, Niastella sp. KS31B, or Burkholderia sp. TSO47-3 on the 12th day of incubation. In addition, when pelleted manure was inoculated with the strains prior to application in the soil microcosms, the level of N₂O emission was significantly lowered to ca. 40–60 % that from the non-inoculated control. Our study provides the prototype of a technique that uses microbial technology to mitigate N₂O emission from agricultural soil fertilized with pelleted poultry manure.  相似文献   

Role of coresistance in the development of resistance to chloramphenicol in Escherichia coli isolated from sick cattle and pigs     

Harada K  Asai T  Kojima A  Ishihara K  Takahashi T 《American journal of veterinary research》2006,67(2):230-235

OBJECTIVE: To determine the cause of persistent resistance to chloramphenicol (CP) after the ban on its use in food-producing animals in several countries. SAMPLE POPULATION: 71 CP-resistant and 104 CP-susceptible Escherichia coli strains isolated from sick cattle and pigs in Japan. PROCEDURE: Susceptibility of all bacterial strains to thiamphenicol (TP) and florfenicol (FFC) was tested by use of an agar dilution method. The CP-resistance genes and variable region within class 1 integrons in CP-resistant strains were identified by use of a PCR assay. RESULTS: The CP acetyltransferase gene (ie, cat1) was identified as the predominant CP-resistance gene in strains isolated from cattle, and the cat1and nonenzymatic CP-resistance gene (ie, cmlA) were the predominant CP-resistance genes in strains isolated from pigs. Additionally, strains with cat1 isolated from cattle often were resistant to ampicillin, dihydrostreptomycin (DSM), oxytetracycline, and trimethoprim (TMP), whereas strains with cat1 or cmlA isolated from pigs often were resistant to DSM and TMP. Class 1 integrons were significantly more prevalent in strains with CP-resistance genes, compared with prevalence in strains without CP-resistance genes. All gene cassettes within the integrons were involved in resistance to DSM, TMP, or both. CONCLUSIONS AND CLINICAL RELEVANCE: Coresistance that develops because of the use of DSM and TMP in cattle and pigs apparently contributes to the selection of CP-resistant strains of E coli. Thus, it is possible that bacterial resistance to CP in animals would persist despite a ban on the use of CP in cattle and pigs.  相似文献   

Isolation and identification of indigenous marine diatoms (Bacillariophyta) for biomass production in open raceway ponds          下载免费PDF全文

Ines Barkia  Fahad Zadjali  Nazamid Saari  Muta Harah Zakaria  Chun L Li  Andrzej Witkowski  Lamya Al‐Haj 《Aquaculture Research》2018,49(2):928-938

For the successful, large‐scale cultivation of microalgae, which for our work refers to diatoms, it is important to select the appropriate species for the right environment. Intensive research on the growth of different strains of microalgae from several regions worldwide is an ongoing effort. The aim of our research in this context was to select the best isolates of diatoms from different coastal sites in Oman, a region whose flora is poorly known, and identify these species using molecular (nuclear‐encoded small subunit ribosomal RNA and chloroplast‐encoded rbcL and psbC) and morphologic data. We aimed also to investigate and measure the growth rate, biomass production and fatty acid composition under ambient environmental conditions. Our results showed that in contrast to most of the research reported in the literature, the production of biomass from six isolates has been successfully carried out with reduced amounts of nutrients and without CO₂ addition. Growth rates for species cultivated outdoors were high and ranged from 0.37 to 0.92 day^?1. These findings are economically very promising as fast growth rates, associated with reduced operational costs, could remarkably improve the production efficiency and thereby justify their use as biomass feedstocks. Molecular data revealed that one isolate was Bellerochea malleus, four isolates represented an unidentified species of Bellerochea and the remaining strain studied represented an unidentified species of the genus Nitzschia. These six strains were rich in polyunsaturated fatty acids, with an average of 47% of the total fatty acids, confirming their potential use as aquaculture feed supplements.  相似文献