Allele mining and haplotype discovery in barley candidate genes for drought tolerance     

András Cseri  Mátyás Cserháti  Maria von Korff  Bettina Nagy  Gábor V. Horváth  András Palágyi  János Pauk  Dénes Dudits  Ottó Törjék 《Euphytica》2011,181(3):341-356

In the present study, allele mining was conducted on a panel of drought related candidate genes in a set of 96 barley genotypes using EcoTILLING, which is a variant of the targeting induced local lesions in genomes (TILLING) technology. Analyzing approximately 1.5 million basepairs in barley a total number of 94 verified unique haplotypes were identified in 18 amplicons designed for 9 genes. Overall, 185 single nucleotide polymorphisms (SNPs) and 46 insertions/deletions (INDELs) were detected with a mean of 1SNP/92 bp and 1INDEL/372 bp genomic sequence. Based on overlapping haplotype sequences, markers were developed for four candidate genes (HvARH1, HvSRG6, HvDRF1, HVA1), which allows distinguishing between the main haplotypes showing either differences in amino acid sequence or which have larger INDELs in the promoter region. As “proof of concept”, the HvARH1 and HvSRG6 haplotypes were tested for the level of abscisic acid-induced gene expression in subsets of genotypes belonging to different haplotype categories. An integrated database was developed to contain information about the genes, genotypes, and haplotypes analyzed in this study. The database supplies profound information about the natural variation in the tested drought related candidate genes providing a significant asset for further mapping studies dealing with this highly polygenic trait.  相似文献   

Effects of input management and crop diversity on non-renewable energy use efficiency of cropping systems in the Canadian Prairie     

R.P. Zentner  P. Basnyat  S.A. Brandt  A.G. Thomas  D. Ulrich  C.A. Campbell  C.N. Nagy  B. Frick  R. Lemke  S.S. Malhi  M.R. Fernandez 《European Journal of Agronomy》2011,34(2):113-123

Although producers’ prime objective may be to increase net returns, many are also interested in conserving and enhancing the quality the soil, water and air resources through adopting more environmentally friendly production practices. This study compared non-renewable energy inputs, energy output, and energy use efficiency of nine dryland cropping systems comprised of a factorial combination of three methods of input management [high (HIGH), i.e., conventional tillage plus full recommended rates of fertilizer and pesticides; reduced (RED), i.e., conservation tillage plus reduced rates of fertilizer and pesticides; and organic (ORG), i.e., conventional tillage plus N-fixing legumes and non-chemical means of weed and pest control]; and three crop rotation systems with varying levels of cropping diversity [a fallow-based rotation with low crop diversity (LOW); a diversified rotation using annual cereal, oilseed and pulse grains (DAG); and a diversified rotation using annual grains and perennial forages (DAP)]. The study was conducted over the 1996–2007 period on a Dark Brown Chernozemic soil (Typic Boroll) in the Canadian Prairies. As expected, total direct plus indirect energy input was the highest for the HIGH and RED input treatments (3773 MJ ha^?1 year^?1), and 50% less for ORG management. Most of the energy savings came from the non-use of inorganic fertilizers and pesticides in the ORG management treatments. Further, total energy use was the highest for the DAG treatments (3572 MJ ha^?1 year^?1), and similar but about 18% lower for the DAP and LOW crop diversity treatments compared to DAG. Thus, overall, the HIGH/DAG and RED/DAG systems had the highest energy requirements (4409 MJ ha^?1 year^?1) and ORG/DAP had the lowest (1806 MJ ha^?1 year^?1). Energy output (calorimetric energy content) was typically the highest for the HIGH input treatments (26,541 MJ ha^?1 year^?1), was about 4% less with RED, and 37% less with ORG management. The latter reflected the lower crop yields obtained with organic management. Similarly, energy output was the highest for the DAP treatments (25,008 MJ ha^?1 year^?1), about 5% less for DAG, and 20% less for the LOW crop diversity treatments. The higher energy output with the DAP treatments largely reflected that the entire harvested biomass of the forage crops was included in energy output, while for grain crops only the seed was included. The straw and crop residues from annual crops were returned to the land to protect the soil from erosion and to maintain soil organic matter as this is the recommended practice in this semi-arid region. In contrast to energy output and to net energy produced, energy use efficiency (measured as yield of grain plus forage produced per unit of energy input or as energy output/energy input ratio) was the highest for the ORG input treatments (497 kg of harvested production GJ^?1 of energy input, and an energy output/energy input ratio of 8.8). We obtained lower, but generally similar energy use efficiency for the HIGH and RED input treatments (392 kg GJ^?1 and ratio of 7.1). Thus, overall, ORG/DAP was the most energy efficient cropping system, while RED/LOW and RED/DAG generally ranked the lowest in energy use efficiency. Our findings support the current movement of producers toward ORG management as a means of reducing the reliance on non-renewable energy inputs and improving overall energy use efficiency of their cropping systems. Our results also suggest that moving away from traditional monoculture cereal rotations that employ frequent summer fallowing, toward extended and diversified crop rotations that use reduced tillage methods, although resulting in an increase in energy output, will not significantly reduce the overall reliance on non-renewable energy inputs, nor enhance energy use efficiency, unless perennial legume forages and/or legume grain crops are included in the cropping mix.  相似文献   

Alga-like forms in onverwacht series, South Africa: oldest recognized lifelike forms on Earth     

Engel AE  Nagy B  Nagy LA  Engel CG  Kremp GO  Drew CM 《Science (New York, N.Y.)》1968,161(3845):1005-1008

Spheroidal and cupshaped, carbonaceous alga-like bodies, as well as filamentous structures and amorphous carbonaceous matter occur in sedimentary rocks of the Onverwacht Series (Swaziland System) in South Africa. The Onverwacht sediments are older than 3.2 eons, and they are probably the oldest, littlealtered sedimentary rocks on Earth. The basal Onverwacht sediments lie approximately 10,000 meters stratigraphically below the Fig Tree sedimentary rocks, from which similar organic microstructures have been interpreted as alga-like microfossils. The Onverwacht spheroids and filaments are best preserved in black, carbonrich cherts and siliceous argillites interlayered with thick sequences of lavas. These lifelike forms and the associated carbonaceous substances are probably biological in origin. If so, the origins of unicellular life on Earth are buried in older rocks now obliterated by igneous and metamorphic events.  相似文献   

Productive infection and cell-free transmission of human T-cell leukemia virus in a nonlymphoid cell line   总被引：34，自引：0，他引：34  

P Clapham  K Nagy  R Cheingsong-Popov  M Exley  R A Weiss 《Science (New York, N.Y.)》1983,222(4628):1125-1127

Human T-cell leukemia virus (HTLV), American PL isolate, was transmitted by cocultivation and by cell-free filtrates to a nonlymphoid human osteogenic sarcoma (HOS) cell line, designated HOS/PL, but not to nine other lines bearing receptors for HTLV. HOS and HOS/PL cells are not dependent on interleukin-2 and do not express interleukin-2 receptors that are recognized by anti-Tac monoclonal antibody. HTLV released by the Japanese MT2 cell line was also transmitted to HOS cells. The infected HOS cells release substantial titers of progeny HTLV which is antigenically indistinguishable from parental virus and is able to transform T cells.  相似文献   

Immunohistochemistry of adenosine deaminase: implications for adenosine neurotransmission   总被引：11，自引：0，他引：11  

J I Nagy  L A LaBella  M Buss  P E Daddona 《Science (New York, N.Y.)》1984,224(4645):166-168

Immunohistochemical analysis of adenosine deaminase in rat brain revealed an extensive plexus of adenosine deaminase-containing neurons in the basal hypothalamus. These neurons converged on and were most numerous in three major centers, namely, the tuberal, caudal, and postmammillary caudal magnocellular nuclei. Most other brain regions were devoid of cells containing adenosine deaminase. Some adenosine deaminase-containing neurons were retrogradely labeled with the fluorescent dye fast blue when the dye was injected into the frontal cortex and striatum. Specific populations of neurons having high levels of adenosine deaminase may release adenosine as a neurotransmitter.  相似文献   

Comparison of calculated and measured ion densities on the dayside of venus     

Nagy AF  Cravens TE  Chen RH  Taylor HA  Brace LH  Brinton HC 《Science (New York, N.Y.)》1979,205(4401):107-109

Datafrom the Pioneer Venus ion mass spectrometers are compared with model calculations of the ion density distributions appropriate for daytime conditions. The model assumes diffusive equilibrium upper boundary conditions for the major ions (O(2)(+), O(+), CO(2)(+), He(+), and H(+)); the agreement between the calculated and measured gross behavior of these ions is reasonably good except for H(+), which may be influenced strongly by convective transport processes. The distributions of five minor ions (C(+), N(+), NO(+), CO(+), and N(2)(+)) are also calculated for the chemically controlled region ( less, similar 200 kilometers); the agreements are, in general, poor, an indication that our present understanding of the Venus minor ion chemistry is still incomplete.  相似文献   

National character does not reflect mean personality trait levels in 49 cultures     

Terracciano A  Abdel-Khalek AM  Adám N  Adamovová L  Ahn CK  Ahn HN  Alansari BM  Alcalay L  Allik J  Angleitner A  Avia MD  Ayearst LE  Barbaranelli C  Beer A  Borg-Cunen MA  Bratko D  Brunner-Sciarra M  Budzinski L  Camart N  Dahourou D  De Fruyt F  de Lima MP  del Pilar GE  Diener E  Falzon R  Fernando K  Ficková E  Fischer R  Flores-Mendoza C  Ghayur MA  Gülgöz S  Hagberg B  Halberstadt J  Halim MS  Hrebícková M  Humrichouse J  Jensen HH  Jocic DD  Jónsson FH  Khoury B  Klinkosz W  Knezević G  Lauri MA  Leibovich N  Martin TA 《Science (New York, N.Y.)》2005,310(5745):96-100

Most people hold beliefs about personality characteristics typical of members of their own and others' cultures. These perceptions of national character may be generalizations from personal experience, stereotypes with a "kernel of truth," or inaccurate stereotypes. We obtained national character ratings of 3989 people from 49 cultures and compared them with the average personality scores of culture members assessed by observer ratings and self-reports. National character ratings were reliable but did not converge with assessed traits. Perceptions of national character thus appear to be unfounded stereotypes that may serve the function of maintaining a national identity.  相似文献   

Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage   总被引：3，自引：0，他引：3  

Dodd AN  Salathia N  Hall A  Kévei E  Tóth R  Nagy F  Hibberd JM  Millar AJ  Webb AA 《Science (New York, N.Y.)》2005,309(5734):630-633

Circadian clocks are believed to confer an advantage to plants, but the nature of that advantage has been unknown. We show that a substantial photosynthetic advantage is conferred by correct matching of the circadian clock period with that of the external light-dark cycle. In wild type and in long- and short-circadian period mutants of Arabidopsis thaliana, plants with a clock period matched to the environment contain more chlorophyll, fix more carbon, grow faster, and survive better than plants with circadian periods differing from their environment. This explains why plants gain advantage from circadian control.  相似文献   

Improved climate control for potato stores by fuzzy controllers     

Klaus Gottschalk  Lszl Nagy  Istvn Farkas 《Computers and Electronics in Agriculture》2003,40(1-3):127

The main tasks for climate controllers in potato bulk stores are to keep the storage climate in an appropriate condition for quality conservation. To avoid extra energy costs by using cooling systems the internal climate of potato bulk stores is controlled with outdoor air. A conventionally designed controller is difficult to adapt for an optimal climate control to reduce quality loss. However, a controller designed with fuzzy logic is found as advantageous for adapting control parameters to improve the control process. A test stand is built to ventilate and to control two samples of potato bulks simultaneously with the same outdoor weather conditions for comparisons. Several experiments were carried out to compare climate controllers with different control algorithms, i.e. conventional to a different conventional and conventional to fuzzy.  相似文献   

Mutations in U4atac snRNA, a component of the minor spliceosome, in the developmental disorder MOPD I     

He H  Liyanarachchi S  Akagi K  Nagy R  Li J  Dietrich RC  Li W  Sebastian N  Wen B  Xin B  Singh J  Yan P  Alder H  Haan E  Wieczorek D  Albrecht B  Puffenberger E  Wang H  Westman JA  Padgett RA  Symer DE  de la Chapelle A 《Science (New York, N.Y.)》2011,332(6026):238-240

Small nuclear RNAs (snRNAs) are essential factors in messenger RNA splicing. By means of homozygosity mapping and deep sequencing, we show that a gene encoding U4atac snRNA, a component of the minor U12-dependent spliceosome, is mutated in individuals with microcephalic osteodysplastic primordial dwarfism type I (MOPD I), a severe developmental disorder characterized by extreme intrauterine growth retardation and multiple organ abnormalities. Functional assays showed that mutations (30G>A, 51G>A, 55G>A, and 111G>A) associated with MOPD I cause defective U12-dependent splicing. Endogenous U12-dependent but not U2-dependent introns were found to be poorly spliced in MOPD I patient fibroblast cells. The introduction of wild-type U4atac snRNA into MOPD I cells enhanced U12-dependent splicing. These results illustrate the critical role of minor intron splicing in human development.  相似文献