A duplex-PCR bioassay to detect a Trichoderma virens biocontrol isolate in non-sterile soil     

Sarah L. Dodd  Alison Stewart 《Soil biology & biochemistry》2004,36(12):1955-1965

This paper describes the identification and utilisation of a sequence-characterised amplified region (SCAR) marker specific for the Trichoderma virens biocontrol isolate GV4. The marker was developed from a RAPD-PCR amplification product unique to isolate GV4. When used as a hybridisation probe in Southern blot analysis, it hybridised to the DNA of the species T. virens alone and not to that of other Trichoderma species or closely related genera Gliocladium and Verticillium. The marker also produced a GV4-specific RFLP, distinguishing it from other T. virens isolates when probed to blots with HindII, BamHI or PstI genomic DNA digests. Primers designed from the sequence of the RAPD marker produced a diagnostic amplification product of 346 bp for GV4 alone, distinguishing it from all other test isolates. With the exception of one, test isolates did not produce an amplification product with the SCAR primers. The exception was a single Verticillium psalliotae isolate (ICMP5509) that produced a product of approx. 400 bp that was easily distinguished from the 346 bp product of GV4. The reliability of the SCAR-based diagnostic test was further improved with the introduction of a positive PCR reaction control to each test, achieved by converting the test to a duplex PCR system. Two universal primers flanking the two ITS and the 5.8S region of the ribosomal gene complex were introduced to each reaction to provide a test for PCR reaction inhibitors to eliminate false negatives in the diagnosis. Amplification of this multi-copy genomic region did not reduce diagnostic sensitivity of the single copy SCAR marker. To further increase the sensitivity of detecting GV4 propagules while maintaining a fast sample assessment assay, soil was amended with cornmeal, as a nutrient source, and a mix of antibiotics to favour Trichoderma growth. The soil mix was subsequently incubated for 5 d before total DNA was extracted. Under these conditions, the duplex soil PCR assay detected GV4 down to a concentration of 10 spores g⁻¹ soil in non-sterile agricultural field soil. This study is the first to report the use of a duplex-PCR diagnostic bioassay for a species within the Hypocrea/Trichoderma genus.  相似文献   

Modelling the effect of environmental change on shorebirds: A case study on Poole Harbour, UK     

Sarah E.A. Le V. dit Durell  Richard A. Stillman  Selwyn McGrorty  John Humphreys 《Biological conservation》2006,131(3):459-473

An individuals-based model, MORPH, was used to assess the quality of Poole Harbour, UK, for five overwintering shorebirds: dunlin Calidris alpina, redshank Tringa totanus, black-tailed godwit Limosa limosa, oystercatcher Haematopus ostralegus and curlew Numenius arquata. Site quality, and the effect of environmental change, was measured as predicted overwinter survival. Dunlin had the highest prey biomass densities and were the least likely to be affected by reductions in their food supply, lower temperatures or loss of terrestrial habitats. Black-tailed godwits and curlew had the lowest prey biomass densities and were the most likely to be affected by reductions in their food supply, lower temperatures and loss of terrestrial habitats. All five shorebird species were seriously affected by simulated sea-level rise. Conservation issues identified for the Poole Harbour SPA were the relatively low densities of larger size classes of polychaete worms, the importance of maintaining and managing surrounding terrestrial habitats and the effect of sea-level rise on the length of time for which intertidal food supplies are available.  相似文献   

Relating microarthropod community structure and diversity to soil fertility manipulations in temperate grassland     

Lisa Cole  Sarah M. Buckland 《Soil biology & biochemistry》2005,37(9):1707-1717

We aimed to identify patterns of diversity in a below-ground community of microarthropods (mites and Collembola) after 15 months of a nutrient (calcium and nitrogen) manipulation experiment, located at the Natural Environment Research Council (NERC) Soil Biodiversity Site in Scotland, UK. We found that microarthropod densities increased with elevated soil fertility, but we detected no concurrent change in the diversity of soil microarthropods (mites and Collembola combined). That microarthropod density increased concurrently with improvements in soil fertility and plant productivity suggests that soil microarthropod communities are predominately regulated by bottom-up forces, driven by increased energy transfer via plant inputs to soil, providing increased food resources for fauna. However, that we found no concurrent change in the diversity of soil microarthropods provides little support for the idea that the diversity of soil fauna is positively related to their population density, primary productivity or improvements in soil conditions resulting from nutrient manipulations. However, we did find that microarthropod communities of more fertile sites contained a greater proportion of predators suggesting that more energy was transferred to higher trophic levels under elevated soil fertility. Our findings suggest that unlike plant communities, soil faunal diversity may not be strongly regulated by competition in productive situations, since competitive exclusion might not occur due to increased predation. Whilst we conclude that soil microarthropod diversity at our study site has not been affected by the nutrient additions to date, in the longer term we predict that changes in community composition and diversity could arise, most likely through top-down regulation of the soil food web.  相似文献   

WCVM GLOBAL VETS          下载免费PDF全文

Mairead Drain  Emma Agg  Leanne Boyd  Suzanne Lynde  Rebecca Korven  Karen Kemp  Patrick Garcia  Sarah Flint    Shannon Burns 《The Canadian veterinary journal. La revue veterinaire canadienne》2003,44(2):121-122

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Diet and health of the older horse     

Sarah L. Ralston VMD  PhD 《Journal of Equine Veterinary Science》2003,23(4)

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Structural studies in azolylmethanes     

Nicholas H. Anderson  Sarah K. Branch  R. S. Thomas Loeffler  Brian E. Mann  Ian W. Nowell  Philip E. Walker 《Pest management science》1984,15(3):310-316

The crystal structures of a number of fungicidal azolylmethanes are compared. In the benzyl compounds [1-aryl-4,4-dimethyl-2-(1,2,4-triazol-1-yl)pentan-3-ones, the corresponding pentan-3-ols, and 1-(4-chlorophenyl)-3-(2-fluorophenyl)-2-(1,2,4-triazol-1-yl)propan-1-one], the benzyl and tert-butyl groups (or 4-chlorophenyl group) are trans, whereas in the analogous phenoxy compounds [1-(4-chlorophenoxy)-3,3-dimethyl-1-(1,2,4-triazol-1-yl)butan-2-one and the corresponding butan-2-ol], the tert-butyl groups are trans to the triazole and gauche to the phenoxy group. Coupling constants, determined by nuclear magnetic resonance (n.m.r.) spectroscopy, suggest that for some compounds there is one dominant solution conformation. Intramolecular hydrogen bonding, observed by infrared spectroscopy in two of the compounds, supports the findings by n.m.r. For some compounds, the crystal and solution conformations appear to be very similar, whereas in others they are quite different. Published data on the relative activity of the enantiomers of the benzyl- and phenoxy-compounds are discussed, but differences in the relative activity of enantiomers in the two series cannot be readily rationalised. It is concluded that different enantiomers may have different modes of binding at the active site.  相似文献   

Congenital elbow luxation in the dog   总被引：3，自引：0，他引：3  

Sarah A. Bingel  Wayne H. Riser 《The Journal of small animal practice》1977,18(7):445-456

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Integrating a bovine rectal palpation simulator into an undergraduate veterinary curriculum     

Baillie S  Mellor DJ  Brewster SA  Reid SW 《Journal of veterinary medical education》2005,32(1):79-85

There are problems associated with teaching bovine rectal palpation to undergraduate veterinary students. The students need opportunities to examine enough cows to develop the required skills, but increasing student numbers and limitations on access to cows have made this more and more difficult to achieve. A virtual reality-based teaching tool, the Bovine Rectal Palpation Simulator, has been developed as a supplement to existing training methods. The student palpates computer generated virtual models of the bovine reproductive tract while interacting with a haptic (touch feedback) device. During training sessions, the instructor follows the student's actions inside the virtual cow on the computer screen and gives instruction. A trial integration of the simulator into the fourth-year bovine reproduction course was undertaken at the University of Glasgow Veterinary School during the 2003/2004 academic year. Students were offered two training sessions, and feedback was gathered using questionnaires. In the first session, all students were taught a range of basic skills using a standardized teaching protocol. The second training session was customized to each student's learning needs and included practice in dealing with a range of on-farm scenarios. Student feedback indicated that the training had been useful for learning various aspects of bovine rectal palpation and provided information that helped in the further development of the simulator as a teaching tool.  相似文献   

Evaluation of intravenous pamidronate administration in 33 cancer-bearing dogs with primary or secondary bone involvement     

Fan TM  de Lorimier LP  Charney SC  Hintermeister JG 《Journal of veterinary internal medicine / American College of Veterinary Internal Medicine》2005,19(1):74-80

The purpose of this study was to evaluate the clinical safety of pamidronate when administered at a mean dosage of 1.0 mg/kg IV q28d in 33 tumor-bearing dogs. Biochemical tests of renal function were evaluated before each successive pamidronate treatment. Of 33 dogs treated with pamidronate, 1 dog had clinically relevant increases in serum creatinine and blood urea nitrogen concentrations. The biologic activity of IV pamidronate was assessed prospectively in 10 dogs with appendicular osteosarcoma and was assessed on reductions in urine N-telopeptide excretion (P = .042) and enhanced bone mineral density of the primary tumor measured with dual-energy x-ray absorptiometry (P = .024). Additionally, in these 10 dogs, pamidronate's therapeutic activity was supported by subjective improvement in pain control in 4 of the 10 dogs treated. IV pamidronate appears clinically safe in tumor-bearing dogs and may possess modest biologic activity for managing neoplastic complications associated with pathologic bone resorption.  相似文献   

Riparian Areas of the Southwestern United States     

Sarah?C.?GosleeEmail author 《Landscape Ecology》2005,20(8):1029-1030

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