Three new algorithms to calculate the irreplaceability index for presence/absence data     

Nobuyuki Tsuji  Yoshitaka Tsubaki 《Biological conservation》2004,119(4):487-494

The irreplaceability index is used for determining the priority of sites for conservation. We propose three new and simple algorithms for calculating it from presence/absence data without any statistical assumptions when the representative combination size is the minimum. The rare species algorithm gives accurate results but takes the longest calculation time. The species richness algorithm gives approximated results and takes the shortest calculation time. The combined algorithm is intermediate in accuracy and calculation time. We applied the combined algorithm to real data of butterflies in the Kanto district, central Japan, and derived irreplaceability values.  相似文献   

Comparison of collagen content, distribution and architecture among the pectoralis, iliotibialis lateralis and puboischiofemoralis muscles with different myofiber composition in Silky cocks     

Yoshi-Nori NAKAMURA  Hisao IWAMOTO  Shoji TABATA  Yoshitaka ONO  Nobuya SHIBA  Shotaro NISHIMURA 《Animal Science Journal》2003,74(2):119-128

The total amount of collagen, the relative distributions of types I and III collagens in perimysium and endomysium, and the collagen fiber architecture were compared among the pectoralis (PT), iliotibialis lateralis (ITL) and puboischiofemoralis (PIF) muscles in Silky cocks. All of the myofibers in the PT muscle were type IIB, the myofibers in the ITL muscle were divided into type IIA, 41.7% and IIB, 58.3%, and the PIF muscle was composed of type I, 24.6%; IIA, 64.6%; and transitional, 10.8%. The total amount of collagen differed significantly among the PT (2.92 mg/g), PIF (4.20 mg/g) and ITL (8.06 mg/g) material, where only the PIF was a whole muscle with epimysium. On the image analysis of the immunohistochemical preparations, the percentage area of perimysial collagen to the total area in each type differed significantly among the PIF, PT and ITL muscles, where it was 26.8, 50.0 and 74.4% for the type I collagen and 27.4, 32.9 and 61.7% for the type III collagen, respectively. In the scanning electron micrography of the perimysium in macerated preparations, thick bundles of collagen fibers were observed in the ITL muscle, thinner but broad platelets in the PT muscle, and a coarse tissue of thinner collagen fibers in the PIF muscle. However, the endomysial fabric of collagen fibrils was similar among the muscles. Small, transverse collagen fibers, which branched off from the thicker perimysia, occupied narrow interendomysial spaces and separated the primary myofiber fasciculi. The results indicate that the ITL muscle, localized in the distorted and overextended part of the leg and subject to strong external forces, had highly developed perimysial collagen fiber bundles, but the ITL endomysial collagen architecture was similar to that of the PT and PIF muscles.  相似文献   

Pathological characteristics of thyroid glands from Japanese Black Cattle living in the restricted area of the Fukushima Daiichi Nuclear Power Plant accident     

Jun Sasaki  Megumi Uehara  Itaru Sato  Hiroshi Satoh  Yoshitaka Deguchi  Hiroyuki Chida  Masahiro Natsuhori  Takahisa Murata  Kenji Ochiai  Kumiko Otani  Keiji Okada  Nobuhiko Ito 《Animal Science Journal》2019,90(9):1333-1339

To study the effect of ionizing radiation on thyroid glands, 66 Japanese Black cattle residing in the restricted area of the Fukushima Daiichi Nuclear Power Plant in 2013–2017 were pathologically examined. There were no clinical symptoms of thyroid disease in these cattle. Three cases of goiter and seven of atrophy were found in two among the four farms examined. Cases of goiter exhibited normal morphological structure without mass or nodule formation in thyroid glands. Cellular atypia or capsular invasion of the follicular epithelium was absent. The estimated integrated dose of external radiation in goiter cases ranged from maximum 797 mSv to minimum 24 mSv. All lobules in the seven atrophic thyroid glands were affected, but pathological findings, such as inflammatory cell infiltration or stromal fibrosis, were not observed. The estimated integrated dose of external radiation in atrophic thyroids ranged from maximum 589 mSv to minimum 8 mSv. Immunohistochemical analysis of anti‐nitroguanosine and the TUNEL method in goiter and atrophic thyroid glands did not reveal any positive findings. The present study indicates that there was no significant relationship between a radiation effect and pathological findings in any thyroid glands.  相似文献   

Decreased blood cell counts were not observed in cattle living in the “difficult‐to‐return zone” of the Fukushima nuclear accident     

Itaru Sato  Jun Sasaki  Hiroshi Satoh  Yoshitaka Deguchi  Hiroyuki Chida  Masahiro Natsuhori  Kumiko Otani  Keiji Okada 《Animal Science Journal》2019,90(1):128-134

White blood cells, especially lymphocytes, are susceptible to radiation exposure. In the present study, red blood cell, total white blood cell, and lymphocyte counts were repeatedly measured in cattle living on three farms located in the “difficult‐to‐return zone” of the Fukushima nuclear accident, and compared with two control groups from unaffected areas. Blood cell counts differed significantly between the two control groups, although almost all the values fell within the normal range. The blood cell counts of the cattle in the “difficult‐to‐return zone” varied across sampling times even on the same farms, being sometimes higher or lower than either of the two control groups. However, neither a statistically significant decrease in blood cell counts nor an increase in the rate of cattle with extremely low blood cell counts was observed overall. The estimated cumulative exposure dose for the cattle on the most contaminated farm was within a range of 500–1000 mSv, exceeding the threshold for the lymphopenia. Because of the low dose rate on these farms, potential radiation damages would have been repaired and have not accumulated enough to cause deterministic effects.  相似文献   

Effect of environmental factors on fertility of Holstein–Friesian cattle in Japan   总被引：1，自引：1，他引：0  

Yoshitaka Nagamine  Osamu Sasaki 《Livestock Science》2008,115(1):89-93

We investigated the environmental factors in Japan, including meteorological conditions, on the fertility of a European cattle breed, Holstein–Friesian, by examining conception rates in different regions. First artificial insemination and associated conception details were recorded for 69,952 Holstein female cattle. In general, meteorological conditions vary considerably according to latitude in Japanese islands. Conception rates were higher in the Northern (above 37°N) than the Southern (below 37°N) region (61.3% vs. 53.3%). All the factors analyzed in the statistical model, including insemination year, region, month, AI technician, service sire and interaction between region and month, had significant effects on the conception rate. In the Southern region, conception rates were lower in the summer months (average temperature, 27.8 °C, and maximum temperature, 32.3 °C). However, this seasonal decline was not observed in the Northern region (average temperature, 23.7 °C, and maximum temperature, 28.4 °C). Regression analysis of conception rate in relation to temperature showed highly significant negative regression coefficients (− 0.66 to − 0.63% per °C; p < 0.001) in the Southern region, but non-significant coefficients in the Northern region. Humidity had a minimal effect on conception rate in both regions. Our data collectively suggest that 37°N latitude is a threshold that affects Holstein–Friesian conception rates in Japan.  相似文献   

Anther culture in rice proportionally rescues microspores according to gametophytic gene effect and enhances genetic study of hybrid sterility     

Yoshitaka Kanaoka  Daichi Kuniyoshi  Eri Inada  Yohei Koide  Yoshihiro Okamoto  Hideshi Yasui  Yuji Kishima 《Plant methods》2018,14(1):102

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External factors that regulate movement in the marine rotifer Brachionus plicatilis     

Kim  Hee-Jin  Ohtani  Masataka  Kakumu  Akira  Sakakura  Yoshitaka  Hagiwara  Atsushi 《Fisheries Science》2020,86(4):655-663

Fisheries Science - There are two types of movement pattern in the Brachionidae (rotifers), swimming and attachment, although the factors that induce a shift between them have not been adequately...  相似文献   

Fish‐processing wastes as an alternative diet for culturing the minute rotifer Proales similis de Beauchamp          下载免费PDF全文

Robert Nesta Kagali  Eric Ochieng Ogello  Yoshitaka Sakakura  Atsushi Hagiwara 《Aquaculture Research》2018,49(7):2477-2485

We evaluated the suitability of fish waste diet (FWD) for culturing the minute rotifer Proales similis through the observation of their population growth and particle size selective feeding. A total of five treatments either with Nannochloropsis oculata or FWD (0.75 and 0.50 g/L) or the combination of N. oculata and FWD were set up in triplicates. P. similis were cultured in diluted natural seawater (8 g/L salinity) and 26 ± 1°C with the diet treatments being applied randomly. We daily monitored the rotifer density, the number of bacteria and the water quality in all the cultures. The population density of P. similis increased exponentially in all treatments, while the mean growth in FWD 0.75 g/L was significantly higher (p < .05) than that in the control. Addition of N. oculata to FWD resulted to lowered P. similis population growth. Bacterial colony count was high in FWD and introduction of P. similis to the diet decreased their density. The estimated bacteria ingestion rates were generally in the range of 6.03 × 10²–1.24 × 10⁴ bacteria/rotifer/hr and there was a positive linear relationship between bacterivory and rotifer population growth. We also observed a shift in the particle size distribution with a reduction in the frequency and concentration of small‐sized particles (<2.5 μm) at day 6. These results accentuate the potential of fish‐processing waste as diet for culturing P. similis which feeds on bacteria and small particles (≤2.5 μm) that are by‐products of degradation of this diet.  相似文献   

A survey method for evaluating drought-sensitive bryophytes in fragmented forests: A bryophyte life-form based approach     

Yoshitaka Oishi 《Biological conservation》2009,142(12):2854-2861

Drought-sensitive bryophytes are especially vulnerable to edge effects caused by forest fragmentation. Because of increased forest fragmentation, these bryophyte species are declining and are in need of conservation. Considering that a field survey including all bryophyte species is very time consuming, methods that make identification less difficult should be tested for their usefulness in conservation. This paper describes an alternative survey method that utilizes the correlation between bryophyte life-forms and microclimates for evaluating drought-sensitive bryophytes. This survey method was examined using epiphytic bryophyte flora on tree trunks in 27 fragmented forests of Kyoto city, in the western part of Japan. The usefulness of life-forms for this evaluation was discussed based on the correlation of life-forms with species richness and microclimates. The results indicated that, while life-from richness was considered to reflect the heterogeneity of moisture availability and light intensity in bryophyte habitats, a certain life-form category (for example, fans and dendroids) seemed to correlate with drought sensitivity of bryophytes. Considering this correlation, an alternative survey method was proposed that utilizes the richness of hygrophilous life-forms. This survey method seems to be more cost-effective than a traditional all-species survey, and provides an important step toward the conservation of drought-sensitive species.  相似文献   

Stand-scale spatial patterns of soil microbial biomass in natural cold-temperate beech forests along an elevation gradient     

Xin Zhao  Yoshitaka Kakubari 《Soil biology & biochemistry》2009,41(7):1466-1474

This study focuses on spatial heterogeneity in the soil microbial biomass (SMB) of typical climax beech (Fagus crenata) at the stand scale in forest ecosystems of the cold-temperate mountain zones of Japan. Three beech-dominated sites were selected along an altitudinal gradient and grid sampling was used to collect soil samples at each site. The highest average SMB density was observed at the site 1500 m a.s.l. (44.9 gC m⁻²), the lowest was recorded at the site 700 m a.s.l. (18.9 gC m⁻²); the average SMB density at the 550 m site (36.5 gC m⁻²) was close to the overall median of all three sites. Geostatistics, which is specifically designed to take spatial autocorrelation into account, was then used to analyze the data collected. All sites generally exhibited stand-scale spatial autocorrelation at a lag distance of 10-18 m in addition to the small-scale spatial dependence noted at <3.5 m at the 550 m site. Correlation analysis with an emphasis on spatial dependency showed SMB to be significantly correlated with bulk density at the 550 and 1500 m sites, dissolved organic carbon (DOC) at the 700 and 1500 m sites, and nitrogen (N) at the 550 and 700 m sites. However, no soil parameter showed a significant correlation with SMB at every site, and some variables were also differently correlated (negative or positive) with SMB at different sites. This suggests that the factors controlling the spatial distribution of SMB are very complex and responsive to local in situ conditions. SMB regression models were generated from both the ordinary least-squares (OLS) and generalized least-squares (GLS) models. GLS performance was only superior to OLS when cross-variograms were accurately fitted. Geostatistics is preferable, however, since these techniques take the spatial non-stationarity of samples into account. In addition, the sampling numbers for given minimum detectable differences (MDD_s) are provided for each site for future SMB monitoring.  相似文献