QTL analysis and regression model for estimating fruit setting in young Citrus trees based on molecular markers     

Osman Gulsen  Aydin Uzun  Ubeyit Seday  Gucer Kafa 《Scientia Horticulturae》2011

This study was conducted to assess the genetic basis and develop a regression model for a QTL trait, fruit setting of a full sib population of 164 hybrids obtained between ‘Clementine’ mandarin (Citrus reticulata Blanco ‘Clementine) and ‘Orlando’ tangelo’ (Citrus paradisi Macf. ‘Duncan’ × C. reticulata Blanco ‘Dancy’). Fruit setting of a 164 full sib population field-planted in 2007 was evaluated by visual counting of fruits in 2008, 2009, and 2010. We estimated linkage groups and effects of QTLs by using MapQTL5. Based on interval mapping, seven linkage groups of the maternal and eight linkage groups of the paternal maps harboured QTLs of the fruits setting, covering a total 300 of 1744 cM Citrus map. Only three segments were associated with all three-year data (one in ‘Clementine’ and two in ‘Orlando’ map) spanning 60 cM of 1744 cM of Citrus linkage map. Twenty-seven (17%) and 13 (8%) hybrids consistently produced less than 5 fruits and the highest number of fruits (≥50) in their 2nd, 3rd, and 4th ages. Based on BACKWARD elimination procedure of PROC REG option nested in SAS program, regression models constructed for 2008, 2009, and 2010s fruit setting explained 35, 81, and 38% of the total phenotypic variation (R²) observed in the 164 full-sib hybrids, respectively (P ≤ 0.05). This study indicated that early fruit setting was a complex trait affected by many QTLs and the regression model developed in this study might be used to predict performances of hybrids with similar genetic background.  相似文献   

Hydraulic properties and water balance of a clay soil cropped with cotton     

M. Aydin 《Irrigation Science》1994,15(1):17-23

A field study was carried out in the Cukurova Region, Southern Turkey to investigate the magnitude of the components of water balance, and the water uptake by cotton roots in relation to hydraulic properties of a clay soil. A plot cropped with cotton and with bare soil only were equipped with tensiometers, gypsum blocks, and access tubes for neutron probe to monitor soil water potential and water content.The hydraulic conductivity values, evaporation and drainage rates, and water withdrawal of roots were determined from field data with numerical calculations based on water flow equations.Results showed that the evaporation from bare soil was generally high during the three month period May to July varying between 4.5 and 1.0 mm/day. However, when soil water potential at 10 cm depth had decreased to -0.065 and -0.070 MPa in the drying phase, the evaporation from the soil decreased to 0.4 mm/day. The drainage rates were influenced by rainfall.The highest values of capillary flux toward the surface layer, and drainage rate from the cropped soil, were 2.0 and 1.8 mm/day respectively. Rates of water uptake by roots from the soil profile, not including the 0–10 cm layer, were high when compared with drainage and upward fluxes, changing between 7.7 and 1.4 mm/day during the experimental period. A good agreement between root length densities and water uptake was found; up to 80% of all roots were in the top 50 cm of the soil and 78% of the total water uptake was extracted from the same layer. Evapotranspiration was found to decline as a cubic function of the available water content of the top 120 cm of the soil profile.  相似文献   

Morphological investigations on the circulus arteriosus cerebri in mole-rats (Spalax leucodon)     

Aydin A  Yilmaz S  Ozkan ZE  Ilgün R 《Anatomia, histologia, embryologia》2008,37(3):219-222

The aim of the present study is to investigate the circulus arteriosus cerebri in mole-rats (Spalax leucodon). Six adult mole-rats were used for this purpose. Coloured latex was injected into the left ventriculus of the hearts of all the animals. After careful dissection, the circulus arteriosus cerebri (the circle of Willis) was investigated. The cerebrum and the cerebellum were supplied by the internal carotid- and the basilar arteries respectively forming the circulus arteriosus cerebri in mole-rats. In the investigated objects, the internal carotid- and the basilar arteries were not united directly and for this reason the circulus arteriosus cerebri was not formed completely in mole-rat. The branches supplying the medulla oblongata and the cerebellum originate from the basilar artery formed by union of the left and right vertebral arteries and the internal ophthalmic, the caudal cerebral, the choroid, the median cerebral, the rostral cerebral arteries originated from the internal carotid artery. After giving off the medial cerebral artery, the right and left rostral cerebral arteries on every two sides divided into the lateral and medial twin branches and by union of the lateral branches the internal ethmoidal artery, and by union of the medial branches, the ramus extending to facies medialis cerebri were formed. The ramus extending to the facies medialis cerebri was anastomosed with the branch of the caudal cerebral artery on the back of the corpus callosum. The last part of the basilar artery gave the two branches running toward the right and left side on the pontocrural groove (sulcus pontocruralis) and every one of these branches ramified into two rami. One of these rami formed into the rostral cerebellar artery and the other one extended to the tectum mesencephali. In conclusion, the arterial circle of the cerebrum and cerebellum was supplied by the internal carotid artery and the basilar artery respectively in mole-rats.  相似文献   

Heterosis for agronomic traits in sesame hybrids of cultivars×closed capsule mutants     

Bülent Uzun  M. Onur ?zba?  Hüseyin ?anci  M. ?lhan ?a?irgan 《Acta Agriculturae Scandinavica, Section B - Plant Soil Science》2013,63(2):108-112

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Silicon Increases Tolerance to Boron Toxicity and Reduces Oxidative Damage in Barley     

Ali Inal  David J. Pilbeam  Aydin Gunes 《Journal of plant nutrition》2013,36(1):112-128

ABSTRACT

Silicon (Si) protects plants from multiple abiotic and biotic stresses The effect of exogenous Si levels (50, 75, and 100 mg kg^?1) on the growth, boron (B) and Si uptake, lipid peroxidation (MDA), lipoxygenase activity (LOX; EC 1.13.11.12), proline, and H₂O₂ accumulation, non-enzymatic antioxidant activity (AA) and the activities of major antioxidant enzymes (superoxide dismutase, SOD, EC 1.15.1.1; catalase, CAT, EC 1.11.1.6 and ascorbate peroxidase, APX, EC 1.11.1.11) of barley (Hordeum vulgare L.) were investigated under glasshouse conditions. Increasing levels of Si supplied to the soil with 20 mg kg^?1 B counteracted the deleterious effects of B on shoot growth. Application of B significantly increased the B concentration in barley plants. However, Si application decreased B concentrations. Increasing application of Si increased the Si concentration in barley plants. The concentration of H₂O₂ was increased by B toxicity but decreased by Si supply. Boron toxicity decreased proline concentrations and increased lipid peroxidation (MDA content) and LOX activity of barley. Compared with control plants, the activities of AA, SOD, CAT, and APX in B stressed plants grown without Si decreased, and application of Si increased their activities under toxic B conditions. The LOX activity was decreased by Si. Based on the present work, it can be concluded that Si alleviates B toxicity by possibly preventing oxidative membrane damage, both through lowering the uptake of B and by increasing tolerance to excess B within the tissues.  相似文献   

Effects of Ram Introduction After the Second Prostaglandin F_2α Injection on Day 11 on the LH Surge Characteristics in Fat-Tailed Ewes     

S Yildiz  M Saatci  M Uzun  B Güven 《Reproduction in domestic animals》2003,38(1):54-57

The aim of this study was to evaluate the effects of ram introduction after the second prostaglandin F_2α (PG F_2α) injection on day 11 on the secretion characteristics of pre‐ovulatory LH surge of fat‐tailed ewes. Multiparous Morkaraman ewes (n=12) were divided into three groups by balancing the groups for liveweight (BW) and body condition score (BCS). On the day of second PGF_2α injection (0 h), performance tested rams (n=2) were either introduced to the ewes at 0 h (ram 0 group, n=4) or at 18 h (ram 18 group, n=4) or were not introduced (control group, n=4). Blood samples were collected at 6, 18, 42, 48, 56, 62, 66, 70, 74, 78 and 90 h for the determination of pre‐ovulatory LH surge. BCS and BW during the experimental period were 2.2 ± 0.2 units and 50.9 ± 2.3 kg, 2.4 ± 0.4 units and 49.2 ± 6.2 kg, 2.1 ± 0.3 units and 45.9 ± 4.4 kg, respectively for the ram 0, ram 18 and control groups (p > 0.05). No significant difference was observed in LH surge characteristics for the experimental groups. Peak LH concentrations were also not different between groups (p > 0.05) and they were 12.2 ± 8.3, 29.1 ± 9.9 and 15.8 ± 9.5 μg/l for the ram 0, ram 18 and control groups, respectively. There was, however, a significant correlation between peak LH concentrations and BCS (p < 0.05, R²=0.373). In conclusion, it appears that, compared with ram introduction, variability in body condition of the ewe has much pronounced effect on the amount of LH secreted after the usage of two PGF_2α injections (11 days apart) as a tool for oestrus synchronization.  相似文献   

Screening,selection and real-time qPCR validation for phytoplasma resistance in sesame (<Emphasis Type="Italic">Sesamum indicum</Emphasis> L.)     

Rustem Ustun  Engin Yol  Cengiz Ikten  Mursel Catal  Bulent Uzun 《Euphytica》2017,213(7):159

Phyllody is one of the most destructive diseases of sesame and causes serious yield losses worldwide. The present research was conducted to identify phyllody resistant genotypes in sesame. A total of 542 sesame genotypes were screened for the disease resistance in the field using a disease incidence scale of 1–5 in the year 2012. Three hundred four genotypes showing high disease intensity were eliminated under artificially infected field conditions. In the year 2013, only 30 out of 238 accessions were determined as potential resistant genotypes based on the disease incidence scale. These selected genotypes were further evaluated for confirmation of the resistance in greenhouse conditions using the phytoplasma-infected vector insects under choice and no-choice conditions. Furthermore, real-time qPCR was employed for detection and quantification of phytoplasmas to select true resistant genotypes. The sesame accessions ACS38 and ACS102 were identified as resistant to the disease after evaluation in field, greenhouse and qPCR assays. This work is one of the most comprehensive studies to select genotypes resistant to the diseases caused by phytoplasmas.  相似文献   

Spatio‐temporal analyses of marine predator diets from data‐rich and data‐limited systems     

Arnaud Grüss  James T. Thorson  Gemma Carroll  Elizabeth L. Ng  Kirstin K. Holsman  Kerim Aydin  Stan Kotwicki  Hem N. Morzaria‐Luna  Cameron H. Ainsworth  Kevin A. Thompson 《Fish and Fisheries》2020,21(4):718-739

Accounting for variation in prey mortality and predator metabolic potential arising from spatial variation in consumption is an important task in ecology and resource management. However, there is no statistical method for processing stomach content data that accounts for fine‐scale spatio‐temporal structure while expanding individual stomach samples to population‐level estimates of predation. Therefore, we developed an approach that fits a spatio‐temporal model to both prey‐biomass‐per‐predator‐biomass data (i.e. the ratio of prey biomass in stomachs to predator weight) and predator biomass survey data, to predict “predator‐expanded‐stomach‐contents” (PESCs). PESC estimates can be used to visualize either the annual landscape of PESCs (spatio‐temporal variation), or can be aggregated across space to calculate annual variation in diet proportions (variation among prey items and among years). We demonstrated our approach in two contrasting scenarios: a data‐rich situation involving eastern Bering Sea (EBS) large‐size walleye pollock (Gadus chalcogrammus, Gadidae) for 1992–2015; and a data‐limited situation involving West Florida Shelf red grouper (Epinephelus morio, Epinephelidae) for 2011–2015. Large walleye pollock PESC was predicted to be higher in very warm years on the Middle Shelf of the EBS, where food is abundant. Red grouper PESC was variable in north‐western Florida waters, presumably due to spatio‐temporal variation in harmful algal bloom severity. Our approach can be employed to parameterize or validate diverse ecosystem models, and can serve to address many fundamental ecological questions, such as providing an improved understanding of how climate‐driven changes in spatial overlap between predator and prey distributions might influence predation pressure.  相似文献   

Diurnal variation in thermal environment experienced by salmonids in the North Pacific as indicated by data storage tags   总被引：2，自引：0，他引：2  

Robert V. Walker  Katherine W. Myers  Nancy D. Davis  Kerim Y. Aydin  Kevin D. Friedland  H. Richard Carlson  George W. Boehlert  Shigehiko Urawa  Yasuhiro Ueno  & Gen Anma 《Fisheries Oceanography》2000,9(2):171-186

Eight temperature-recording data storage tags were recovered from three salmonids in Alaska (pink and coho salmon and steelhead trout) and five chum salmon in Japan after 21–117 days, containing the first long-term records of ambient temperature from Pacific salmonids migrating at sea. Temperature data imply diel patterns of descents to deeper, cooler water and ascents to the surface. Fish were found at higher average temperatures at night, with narrower temperature ranges and fewer descents than during the day. Fish tagged in the Gulf of Alaska were at higher temperatures on average (10–12°C) than chum salmon tagged in the Bering Sea (8–10°C). Chum salmon were also found at a wider range of temperatures (−1–22°C vs 5–15°C). This is probably related both to the different oceanographic regions through which the fish migrated, as well as species differences in thermal range and vertical movements. Proportions of time that individual fish spent at different temperatures seemed to vary among oceanographic regions. Steelhead trout may descend to moderate depths (50 m) and not be limited to the top few metres, as had been believed. Japanese chum salmon may seek deep, cold waters as they encounter warm surface temperatures on their homeward migrations. Temperature data from all fish showed an initial period (4–21 days) of day and night temperatures near those of sea surface temperatures, suggesting a period of recuperation from tagging trauma. A period of tagging recuperation suggests that vertical movement data from short-term ultrasonic telemetry studies may not represent normal behaviour of fish. The considerable diurnal and shorter-term variation in ambient temperatures suggests that offshore ocean distribution may be linked more to prey distribution and foraging than to sea surface temperatures.  相似文献   

Incidence and prevalence of Diplectanum aequans and its influence on the fitness of juvenile sea bass (Dicentrarchus labrax) in the Black Sea     

Hamdi Ogut  Ecren Uzun 《Aquaculture Research》2014,45(4):742-748

High rates of unexplained mortalities (up to 70%) are anticipated in the cultured juvenile sea bass (Dicentrarchus labrax) in farms in the eastern Black Sea at least for the last 8 years. Diplectanum aequans, often blamed for the observed mortalities, is the only prevalent parasite impacting the health of sea bass in the brackish water of the Black Sea. To investigate the seasonal fluctuation of D. aequans prevalence, mean intensities and the potential effects of D. aequans on the fitness of sea bass, eight cages from one farm (Farm A) and four cages at another distinct site (Farm B) were surveyed monthly from May to October of 2008. Six hundred and sixty‐one juvenile sea bass from Farm A and 236 from Farm B were individually examined for the presence and intensity of the parasite. The prevalence of D. aequans in cultured sea bass (96.3 ± 11.11; Mean ± SD) ranged from 66.7% to 100% in June, the beginning of 6‐month growing season. The mean intensity was 6.08 ± 2.19, significantly higher than that (2.74 ± 0.87; P < 0.05) in December (P < 0.05), the end of the growing season. Fish with low fitness had significantly higher number of parasite than the fish with higher fitness (P < 0.005). Although D. aequans negatively influenced host's condition factor, the impact was not enough to lead mortalities in the cultured sea bass in the Black Sea.  相似文献