Fusarium oxysporum f. sp. cyclaminis: underestimated genetic diversity     

Charline Lecomte  Véronique Edel-Hermann  Marc-Antoine Cannesan  Nadine Gautheron  Agnès Langlois  Claude Alabouvette  Fabien Robert  Christian Steinberg 《European journal of plant pathology / European Foundation for Plant Pathology》2016,145(2):421-431

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The larger,the better? Effects of delayed diameter-limit cutting on old-growth attributes and saproxylic beetle diversity in temperate oak forests     

Gwendoline Percel  Guillem Parmain  Fabien Laroche  Christophe Bouget 《European Journal of Forest Research》2018,137(2):237-249

Intensive management implies harvesting large, old trees, which reduces the old-growth attributes. This negatively affects biodiversity, especially saproxylic beetles. In managed temperate oak forests, rotation extension induced by increasing the diameter threshold of final harvest by about 10 cm compared to conventional practices (i.e. DBH around 70 cm) might mitigate this negative effect. Here, we used a gradient of the proportion of overmature trees (DBH?≥?80 cm) among mature trees (DBH?≥?70 cm) across plots of high oak French forests to test the potential effect of increasing diameter threshold on (1) structural features and (2) species composition and diversity of saproxylic beetles communities. We assessed deadwood and microhabitats availability (i.e. volume/density and diversity) and canopy openness in 81 1-ha plots across eleven French forests. Results highlighted that a larger proportion of overmature trees, for a given density of mature trees, had limited effects on structural features: only cavities density showed a significant positive response, with no cascading effect on cavicolous beetles. Moreover, the proportion of overmature trees had no significant effect on the composition of saproxylic beetles communities (and ecological variables altogether explained only 17% of the composition inertia). By contrast, mature tree density enhanced microhabitat density and indirectly increased the abundance of rare species. Thus, shifting DBH from 70 to 80 cm in high oak forest could have no or limited effect on saproxylic beetles conservation. Improved strategies might rather stem from combining (1) longer rotation extension and (2) less intensive management practices in extended rotation stands.  相似文献   

Breakdown of the Scab Resistance Gene Vf in Apple Leads to a Founder Effect in Populations of the Fungal Pathogen Venturia inaequalis     

Guérin F  Le Cam B 《Phytopathology》2004,94(4):364-369

ABSTRACT The recent breakdown of Vf, a major resistance gene to apple scab, provided an opportunity to analyze a population genetic process within the matching virulent subpopulation of the fungus Venturia inaequalis. We utilized the amplified fragment length polymorphism technique and allelic variation at four microsatellite loci to assess genetic structure of 133 isolates of V. inaequalis from a single commercial apple orchard sampled from one cultivar carrying the Vf gene (Judeline) and three cultivars devoid of the Vf gene. Both analyses indicated a strong decrease of the genetic diversity among isolates from the Vf cultivar compared with the high level of diversity among isolates from the three other cultivars. This leads to a high genetic differentiation between virVf and avrVf groups (F(ST) > 0.17). Analyses of the genetic distance between AFLP patterns based on the Jaccard index indicate that all virVf isolates could be assigned to a single clonal lineage. These results lead us to conclude that the clonal structure of the population isolated from the Vf cultivar is an example of a founder effect in response to a resistance gene breakdown and it is likely that this event occurred in the orchard during the sampling year.  相似文献   

Evaluation of a thoracoscopic technique using ligating loops to obtain large lung biopsies in standing healthy and heaves-affected horses     

Relave F  David F  Leclère M  Alexander K  Bussières G  Lavoie JP  Marcoux M 《Veterinary surgery : VS》2008,37(3):232-240

Objective— To evaluate use of pre‐tied ligating loop to perform thoracoscopic, large lung biopsy in normal and heaves‐affected horses. Study Design— Prospective clinical study. Animals— Normal (n=5) and heaves‐affected (n=6) horses. Methods— Lung biopsies, 1 from each hemithorax, were collected thoracoscopically using a pre‐tied ligating loop. Horses were either normal (C) or heaves‐affected with the latter being in remission (Ha) for the initial biopsy and in exacerbation (Hs) for the 2nd biopsy. Clinical variables, PaO₂, and PaCO₂ were used to determine the effect of surgical biopsy. Postoperative pneumothorax was monitored by serial thoracic radiographic examinations. Results— Thoracoscopic lung biopsy (n=29, 22 procedures) was well tolerated by all horses. Complication rate was 31%, including 8 ligature slippage and 1 pulmonary hemorrhage. Intranasal oxygen was administered intraoperatively to 6 horses (2 C, 1 Ha, 3 Hs) with severe hypoxemia or labored breathing. There was a significant decrease in PaO₂ during surgery in horses not supplemented with oxygen. Postoperative pneumothorax (21/22 procedures) detected radiographically resolved within 3 weeks. Conclusion— Thoracoscopic lung biopsy using pre‐tied ligating loops was minimally invasive, relatively inexpensive, and fairly efficient. Heaves‐affected horses tolerated the surgery well, even when in exacerbation; however, the technique was associated with non life‐threatening complications in 31% of the biopsies, most of which required correction with additional ligating loops or more sophisticated instrumentation. Clinical Relevance— Using laparoscopic pre‐tied ligating loop for thoracoscopically‐assisted lung biopsy can be considered in horses with normal and impaired lung function but alternative instrumentation and access to intranasal oxygen must be available to the surgeon in case of complications.  相似文献   

Migration behaviour and escapement of European silver eels from a large lake and wetland system subject to water level management (Grand‐Lieu Lake,France): New insights from regulated acoustic telemetry data          下载免费PDF全文

Thomas Trancart  Eric Feunteun  Valentin Danet  Alexandre Carpentier  Virgile Mazel  Fabien Charrier  Morgan Druet  Anthony Acou 《Ecology of Freshwater Fish》2018,27(2):570-579

Current knowledge about the downstream migration of sexually mature European eels (Anguilla anguilla) remains incomplete, particularly in still water habitats such as lakes and wetlands subject to water level management. However, for the management of this endangered species, it is important to understand migration dynamics, and contribution to the breeding stock. This study aimed to assess the parameters that trigger and guide the migration of silver eels in the largest floodplain lake and associated wetlands in France (the sluice regulated Grand‐Lieu Lake). A telemetry survey of 50 acoustic and PIT‐tagged female silver eels was performed during the 2015–2016 migration period. We deployed a novel telemetric approach, using receivers to delimit several restricted virtual boxes to determine the instantaneous location of individuals and to transform simple discrete telemetric data into presence/absence data. The low numbers leaving the lake centre are probably explained by the lack of orienting water flows or other environmental clues, but whilst the fate of 34% (17/50) of the tagged eels is unknown, 18% (9/50) were caught by commercial fishermen. Modelling showed that detections were not clearly associated with environmental factors typically involved in riverine migrations (e.g. current velocity, atmospheric pressure and temperature) but they were particularly associated with higher and increasing water levels and, for eels exiting the lake, a sharp increase when sluice gates were opened to an effective gap of >75 cm. It is concluded that management of water levels and sluice gate opening during the migration period might aid escapement of silver eels.  相似文献   

Effects of natural rapids and waterfalls on fish assemblage structure in the Madeira River (Amazon Basin)     

Gislene Torrente‐Vilara  Jansen Zuanon  Fabien Leprieur  Thierry Oberdorff  Pablo A. Tedesco 《Ecology of Freshwater Fish》2011,20(4):588-597

Abstract – Habitat connectivity is considered a central factor shaping ecological communities, and the effects of waterway barriers such as natural waterfalls on fish movements are expected to produce differing assemblage structures in riverine ecosystems. Here, we evaluate the influence of a sequence of waterfalls on the compositional dissimilarity of fish assemblages along the Madeira River, the largest tributary of the Amazon River. We found significant differences in species composition between rivers stretches located upstream and downstream of Teotônio waterfall and, to a less extent, Jirau waterfall, independently of the hydrological period. After accounting for the relative roles of local and regional factors in explaining fish compositional dissimilarity, we still observe a significant effect of the waterfalls. We conclude that these waterfalls act as natural ecological barriers limiting fish dispersal processes and discuss aspects of these ecological filters and the potential effects of two dams currently under construction in the Madeira River.  相似文献   

Mass marking of stocked European glass eels (Anguilla anguilla) with alizarin red S          下载免费PDF全文

Jean‐Marie Caraguel  Fabien Charrier  Virgile Mazel  Eric Feunteun 《Ecology of Freshwater Fish》2015,24(3):435-442

This study describes a mass marking method suitable for European glass eel Anguilla anguilla, avoiding osmotic shock and reducing fish stress. During a single day, 360,000 glass eels intended for a stocking operation were bathed into an alizarin red S (ARS) solution, at a density of 346 ind.·l^?1 before being released into a freshwater marsh along with unmarked glass eels. After 15 days, examination of marked and unmarked eels kept in enclosures in the marsh showed 100% of otoliths had been successfully marked and that no excess deaths related to marking process had occurred. Seven months after stocking, results from biometric measurements and otolith analysis, carried out on a sample of 53 elvers caught by electrofishing and belonging to the size class of the 0⁺ cohort, suggest that: (i) the proportions of marked and unmarked remained unchanged, hence suggesting that the marking process had not caused excess mortality, (ii) there was no difference in length, body mass or condition factor between marked and unmarked individuals, demonstrating that marking had caused no harmful effect after 7 months, and (iii) ARS marks in otoliths remained clearly visible. The benefits of this ARS mass marking technique are discussed through a stocking operation.  相似文献   

Spawning areas and migration patterns in the early life history of Squalius cephalus (Linnaeus, 1758): Use of otolith microchemistry for conservation and sustainable management     

Bernadette Bounket  Hélène Tabouret  Pierre Gibert  Gilles Bareille  Christophe Pecheyran  Georges Carrel  Christine Argillier  Fabien Morat 《水产资源保护:海洋与淡水生态系统》2021,31(10):2772-2787

1. In the context of the River Rhône restoration programme, the objective of this study was to assess the dispersal and population connectivity of the European chub, Squalius cephalus (Linnaeus, 1758) in a section of the natural, free-flowing part of the lower River Rhône.
2. The elemental water signatures for Sr:Ca and Ba:Ca were measured at seven stations within the river section, including its tributaries and backwaters, to determine whether they could be differentiated by microchemistry. From August to October the signatures differed among three sectors of the study reach: the Rhône; the Ardèche; and the backwaters.
3. The elemental signatures of the otoliths of 178 young-of-the-year (YOY) chub from the stations were measured to assess spawning areas and identify early migratory life histories. Analyses of otolith microchemistry identified the natal origin of 95% of the fish. Sr:Ca signatures of otoliths showed early downstream migration for 30.4% of the YOY chub; however, 70% of the fish recruited relatively close to their spawning origin suggesting a potential inshore retention of fish.
4. The results showed (i) a non-negligible contribution of the tributaries and backwaters in the recruitment of fish into the main channel; and (ii) the ability of chub to migrate over several kilometres during their first few months of life.
5. This study shows that the combination of water and otolith microchemistry analyses of fish growth increases the understanding of fish life history. Moreover, the study revealed that half of the YOY fish from this river section came from the tributaries and the other half came from reproduction in the River Rhône (despite its high anthropization).
6. These methods offer promising future applications of otolith microchemistry for river management in the context of ecological rehabilitation, especially to assess the effectiveness of measures applied in the restoration of floodplain connectivity for riverine fish population conservation.

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Can drifting objects drive the movements of a vulnerable pelagic shark?     

Lucas Bonnin  Christophe Lett  Laurent Dagorn  John David Filmalter  Fabien Forget  Philippe Verley  Manuela Capello 《水产资源保护:海洋与淡水生态系统》2021,31(1):74-82

1. Juvenile silky sharks (Carcharhinus falciformis) regularly associate with floating objects yet the reasons driving this behaviour remain uncertain. Understanding the proportion of time that silky sharks spend associated with floating objects is essential for assessing the impacts of the extensive use of fish aggregating devices (FADs) in the tropical tuna purse-seine fisheries, including increased probability of incidental capture and the potential of an ecological trap.
2. Previous studies provided insight into the amount of time that silky sharks spent at an individual FAD but were unable to assess neither the time spent between two associations nor the proportion of time spent associated/unassociated.
3. The percentage of time that juvenile silky sharks spend unassociated with floating objects was estimated through the analysis of horizontal movements of 26 silky sharks monitored with pop-up archival tags. Under the assumption that a high association rate with drifting FADs would align the trajectories of tracked sharks with ocean surface currents, a novel methodology is proposed, based on the comparison of shark trajectories with simulated trajectories of passively drifting particles derived using a Lagrangian model.
4. Results revealed that silky shark trajectories were divergent from surface currents, and thus unassociated with FADs, for at least 30% of their time. The potential of the methodology and the results are discussed in the context of increasing FAD densities in the Indian Ocean.

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How anthropogenic disturbances affect the resilience of a keystone palm tree in the threatened Andean cloud forest?     

Fabien Anthelme  Juan Lincango  Charlotte Gully  Nina Duarte  Rommel Montúfar 《Biological conservation》2011,(3):1059-1067

To conserve tropical forests, it is crucial to characterise the disturbance threshold beyond which populations of tropical trees are no longer resilient. This approach is still not widely employed, especially with respect to the effects of moderate disturbances. Compensation effects, such as positive interactions among plants, are addressed even more rarely. We attempt to identify the extents to which the distribution of the keystone palm tree Ceroxylon echinulatum is regulated by various regimes of deforestation in a threatened tropical montane cloud forest in the North-West Andes of Ecuador. The demographic structure of this palm tree was examined in three habitats: old-growth forest, forest disturbed by selective logging, and deforested pasture. Patterns were related to stand structure, microclimate, and soil composition. Seedling desiccation owing to severe aboveground water stress led to the absence of juvenile palms in pastures, and thus was predictive of a near extinction of the species in this habitat. However, shade provided by dominant bunchgrass in pastures considerably reduced above- and belowground water stress by diminishing light intensity. Selective logging resulted in a higher density of individuals in disturbed forests than in old-growth forests, but was associated with a spoiled spatial structure. Therefore, the protection of residual old-growth forests is a prerequisite for the conservation of C. echinulatum, although secondary forests might act as provisional refuges that promote its resilience. The reduction of water stress by nurse grasses in pastures represents a promising approach to promote the resilience of tropical tree species and their associated communities after deforestation.  相似文献