Development of a loop-mediated isothermal amplification assay for rapid, sensitive and specific detection of a Campylobacter jejuni clone     

Luo Y  Sahin O  Dai L  Sippy R  Wu Z  Zhang Q 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2012,74(5):591-596

Loop-mediated isothermal amplification (LAMP) assay is a simple, rapid and specific detection method and has been used for detection and identification of different Campylobacter species. In this study, we develop a LAMP assay specific for detection of a particular clone (clone SA) of Campylobacter jejuni, associated with the vast majority of recent sheep abortions in the U.S. Using a set of specific primers for C. jejuni IA3902 (a clone SA isolate) and genomic DNA or boiled cell extract as template, the target DNA was amplified at 63 °C for 50 min in a water bath. A positive reaction was identified visually as white precipitate or fluorescence under UV, and confirmed by gel electrophoresis. Detection limit of the assay was comparable to that of conventional PCR. The LAMP was shown to be specific for detection of clone SA when tested on a number of C. jejuni strains of different genetic backgrounds. Applicability of the LAMP assay for specific detection of clone SA was demonstrated in animal tissues experimentally infected with IA3902 or genetically diverse C. jejuni strains. Since clone SA is the predominant cause of sheep abortions in the U.S. and is a zoonotic pathogen, the LAMP assay may be a valuable detection tool in future epidemiological studies.  相似文献   

Resveratrol protects quail hepatocytes against heat stress: modulation of the Nrf2 transcription factor and heat shock proteins     

Sahin K  Orhan C  Akdemir F  Tuzcu M  Iben C  Sahin N 《Journal of animal physiology and animal nutrition》2012,96(1):66-74

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New method for estimating the volume and volume fractions of the nasal structures in the goose (Anser anser domesticus) using computed tomography images     

B. Onuk  M. Kabak  B. Sahin  N.G. Ince  M.B. Selcuk 《British poultry science》2013,54(4):441-446

1. The conchae within the nasal cavity of poultry are important for water and energy conservation, but have not been experimentally evaluated. The aim of the present study was to determine the accuracy of volume and volume fraction estimates of the conchae, nasal septum and nasal cavity.

2. The nasal cavities of 7 adult goose heads were scanned using computed tomography (CT), with images sampled randomly at a 1/5 sampling fraction. Physical sections were obtained from the same samples, using an electric saw that had an adjustable section range, and provided 14 to 15 sections with a thickness of 2.5 mm. The section surface areas of the nasal cavity, nasal septum and conchae were estimated using the Cavalieri principle. Results obtained using the CT and physical section images were compared. Volumes and volume fractions obtained from the physical sections were accepted as the gold standard and differences in the CT images were determined.

3. Multiplication of the data obtained on the CT images with the deviation percentage of the physical sections produced normalised values. No differences were observed between the gold standard data and the CT images. While it was possible to normalise the obtained data using the gold standard values, the raw data could also be used for comparative studies because the deviations from normal would be similar for all groups.

4. Our study showed that the nasal structures could be estimated in vivo using CT images.  相似文献   

Effect of freezing and thawing processes on some physical properties of saline–sodic soils mixed with sewage sludge or fly ash     

Ustun Sahin  Ilker Angin  Fatih M. Kiziloglu 《Soil & Tillage Research》2008,99(2):254-260

Dispersion of saline–sodic soils was rather difficult to leach. Therefore, negative effects of freeze–thaw on soil physical properties should be reduced by inexpensive and practical methods. This study investigates the effect of freeze–thaw cycles (3, 6, and 9) on wet aggregate stability, bulk density, and permeability coefficient in three soils with different electrical conductivity and exchangeable sodium percentage levels (soil I: 5.30 dS m⁻¹, 47.51%; soil II: 42.80 dS m⁻¹, 55.45%; soil III: 36.30 dS m⁻¹, 59.34%) which consist of different proportions of sewage sludge and fly ash by volume (10%, 20%, and 30%). The experiment was conducted under laboratory conditions using disturbed and non-cropped soil samples mixed with sewage sludge and fly ash. Soils mixed with sewage sludge produced higher aggregate stability and permeability coefficients and lower bulk density values as compared to the soils mixed with fly ash. Sewage sludge added with a rate of 30% eliminated the negative effects of freeze–thaw processes on wet aggregate stability. Freeze–thaw processes did not affect the bulk density of the soils II and III, which were mixed with sewage sludge. However, fly ash addition decreased the bulk density of these soils very significantly after nine freeze–thaw cycles. Addition of sewage sludge or fly ash with rates of 20% and 30% significantly increased the permeability coefficients in soil I after nine freeze–thaw cycles. Results indicated that addition of sewage sludge and/or fly ash to saline–sodic soils could be alternative way for reducing negative effects of freezing–thawing on soil wet aggregate stability, bulk density, and permeability coefficient.  相似文献   

The Response of Soilless Grown ‘Michele Palieri’ (<Emphasis Type="Italic">Vitis vinifera</Emphasis> L.) Grapevine Cultivar to Deficit Irrigation Under the Effects of Different Rootstocks     

Ali Sabir  Zekiye Sahin 《Erwerbs-Obstbau》2018,60(1):21-30

Global warming, altering the physiology and irrigation demand of grapevines, has already been perceived in certain premium viticulture regions across the world. Selection of proper rootstocks for especially new cultivars has vital role for a sustainable viticulture under water-deficit conditions. The grapevine cultivar ‘Michele Palieri’ has been finding a good reception on the global markets. The objective of this study was to determine the response of ‘Michele Palieri’ cultivar to deficit irrigation using different rootstocks with distinct genetic origins. Two irrigation regimes (Full Irrigation [FI] and Deficit Irrigation [DI]) were applied to the vines of different grafting combinations of ‘Michele Palieri’ with Kober 5 BB, Richter 99, Richter 110, 140 Ruggeri, 44–53 Malégue or grown on own roots. Two years old vines were cultivated in 60?L pots containing sterile peat under controlled glasshouse conditions. Irrigations were regulated according to soil water matric potential (Ψm) levels using tensiometers. The volume of the irrigation water that has to be applied to attain 100% field capacity was performed as FI, while 50% of FI was considered as DI. The water was transported directly into the pots by micro-irrigation systems consisting of individual spaghetti tubes. The vines of DI treatment showed visible symptoms of mild water stress (e.?g., loss of turgor in shoot tips), but no defoliation or leaf necrosis occurred. DI treatment reduced the gs of ‘Michele Palieri’ scion cultivar in varying levels depending on the rootstock. DI treatment also affected vegetative growth of the scion cultivar in different levels. For example, the greatest decrease (26.7%) in shoot length resulting from DI was determined in ‘Michele Palieri’/5 BB grapevines, followed by own rooted vines (13.1%), while the lowest change (2.4%) was found in vines grafted on 110?R. Overall findings of this study imply that the rootstocks originating from V. berlandiery?×?V. rupestris hybrids (110?R, 99?R, 140?Ru and 44–53?M) better performed in a similar genetic aptitude under deficit irrigation regime while the rootstock 5 BB (V. berlandiery?×?V. rupestris) showed more susceptible responses. On the other hand, the general response of own rooted vines were better than those grafted on 5 BB. Therefore, the use of one of V. berlandiery?×?V. rupestris hybrids may be a better choice for viticulture under semiarid regions.  相似文献   

Effect of N2‐fixing bacterial inoculations on yield of sugar beet and barley     

Ramazan akmak&#x;  Faik Kantar  Fikrettin Sahin 《植物养料与土壤学杂志》2001,164(5):527-531

Drawbacks of intensive farming practices and environmental costs of N fertilizers have renewed interest in bio‐fertilizers. This study was conducted in order to investigate the effectiveness of 7 N₂‐fixing bacterial isolates from various sources in sugar beet and barley production under field conditions in the higland plateau of Erzurum, Turkey (29° 55′ N and 41° 16′ E with an altitude of 1950 m) in 1999 and 2000. Seeds were inoculated with five bacterial strains of Bacillus; BA‐140, BA‐142, M‐3, M‐13, and M‐58, a strain of Burkholderia (BA‐7) and Pseudomonas (BA‐8). The bacterial strains had been demonstrated to grow in N‐free basal medium. The experiment also included applications of mineral nitrogen (N), phosphorous (P), and NP‐fertilizer as well as a control treatment without inoculation and fertilizer application. Two years of trials under field conditions showed that seed inoculation with bacterial strains significantly affected yield, yield components, and quality parameters both in sugar beet and barley. On an average of both years, seed inoculation of sugar beet with BA‐140, BA‐142, M‐58, BA‐7, BA‐8, M‐13, and M‐3 increased root yield by 13.0, 12.6, 10.5, 9.2, 8.1, 6.1, and 6.5% as compared to the control and sugar yield by 7.8, 6.3, 5.1, 4.0, 3.2, 2.3, and 5.3%, respectively. N, P, and NP applications, however, increased root yield up to 13.6, 5.3, and 21.4% and sugar yield by 6.1, 4.0, and 14.8%, respectively. Of the bacteria tested, BA‐140 and BA‐142 had yields equal to N application. All bacterial inoculations also gave higher seed and total biomass yields in barley than control plots. BA‐140 and BA‐142 were top yielding strains. In conclusion, bacterial seed inoculations especially with BA‐140 and BA‐142 may satisfy nitrogen requirements of sugar beet and barley under field conditions even in upland areas.  相似文献   

Three-Step Test System for the Identification of Novel GABAA Receptor Modulating Food Plants     

Sümeyye Sahin  Volker Eulenburg  Wolfgang Kreis  Carmen Villmann  Monika Pischetsrieder 《Plant foods for human nutrition (Dordrecht, Netherlands)》2016,71(4):355-360

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Production of human milk fat analogue containing docosahexaenoic and arachidonic acids     

Turan D  Sahin Yeşilçubuk N  Akoh CC 《Journal of agricultural and food chemistry》2012,60(17):4402-4407

Human milk fat (HMF) analogue containing docosahexaenoic acid (DHA) and arachidonic acid (ARA) at sn-1,3 positions and palmitic acid (PA) at sn-2 position was produced. Novozym 435 lipase was used to produce palmitic acid-enriched hazelnut oil (EHO). EHO was then used to produce the final structured lipid (SL) through interesterification reactions using Lipozyme RM IM. Reaction variables for 3 h reactions were temperature, substrate mole ratio, and ARASCO/DHASCO (A:D) ratio. After statistical analysis of DHA, ARA, total PA, and PA content at sn-2 position, a large-scale production was performed at 60 °C, 3:2 A:D ratio, and 1:0.1 substrate mole ratio. For the SL, those results were determined as 57.3 ± 0.4%, 2.7 ± 0.0%, 2.4 ± 0.1%, and 66.1 ± 2.2%, respectively. Tocopherol contents were 84, 19, 85, and 23 μg/g oil for α-, β-, γ-, and δ-tocopherol. Melting range of SL was narrower than that of EHO. Oxidative stability index (OSI) value of SL (0.80 h) was similar to that of EHO (0.88 h). This SL can be used in infant formulas to provide the benefits of ARA and DHA.  相似文献   

Yield promotion and phosphorus solubilization by plant growth–promoting rhizobacteria in extensive wheat production in Turkey     

Metin Turan  Medine Gulluce  Nicolaus von Wirén  Fikrettin Sahin 《植物养料与土壤学杂志》2012,175(6):818-826

Plant growth–promoting rhizobacteria (PGPR) have been reported to stimulate the growth and yield of grain crops, particularly when nutrient supply is poor. However, the mechanisms underlying stimulation of plant growth may vary depending not only on growth conditions and crop management but also on plant and bacterial species. The present study assessed the effect of an inoculation with single or multiple PGPR strains on phosphorus (P)‐solubilization processes in the soil and on grain yield in wheat. Single inoculation with Bacillus subtilis OSU‐142, Bacillus megaterium M3, or Azospirillum brasilense Sp245 increased grain yield by 24%, 19%, and 19%, respectively, while a mixed inoculation with OSU‐142, M3, and Sp245 increased grain yield by 33% relative to noninoculated plants. Single inoculations with Paenibacillus polymyxa RC05 or Bacillus megaterium RC07 were less effective. Single or mixed treatments with OSU‐142, M3, and Sp245 increased the concentrations of the labile and moderately labile P fractions in rhizosphere soil. The growth‐stimulating effect of OSU‐142, M3, and Sp245 was also reflected by higher P concentrations in most plant organs. Among all inocula tested, the highest plant P acquisition was obtained in the presence of M3 and accompanied by the highest microbial P levels and the highest phosphatase activities in the rhizosphere soil. In conclusion, seed inoculation with mixed PGPR strains may effectively substitute for a part of P‐fertilizer application in extensive wheat production, and in particular M3 appears to improve the solubilization of inorganic soil P.  相似文献   

ELEMENTAL COMPOSITION OF PEPPER PLANTS FERTILIZED WITH PELLETIZED POULTRY MANURE     

Ozge Sahin  Mehmet B. Taskin  Yusuf K. Kadioglu  Ali Inal  David J. Pilbeam  Aydin Gunes 《Journal of plant nutrition》2014,37(3):458-468

Poultry manure (PM) has been traditionally applied to crops for decades as an organic fertilizer, because it is a good and balanced source of plant nutrients. Its effect on plant growth and yield has been widely investigated and is well known. However, there has been little effort to relate elemental compositions of the manure applied to their concentrations in the plants. The objective of this study was to examine the effects of PM on the growth, and essential and non-essential element composition of pepper (Capsicum annuum) leaves and also fruits. Pepper plants were grown in soil with 0, 10, 20, and 40 g kg^?1 PM under greenhouse conditions. Concentrations of nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), magnesium (Mg), sulfur (S), silicon (Si), aluminum (Al), iron (Fe), zinc (Zn), copper (Cu), manganese (Mn), molybdenum (Mo), chloride (Cl), nickel (Ni), bromine (Br), rubidium (Rb), strontium (Sr), barium (Ba), lanthanum (La), and cerium (Ce) in leaves at the flowering stage and in fruits were determined by polarized energy dispersive X-ray fluorescence (PEDXRF). Poultry manure fertilization significantly improved pepper shoot growth and also fruit yield, and increased leaf and fruit P concentrations but not N, K, Mg, Si, Al, Ni, and Fe. Leaf Ca was significantly reduced by increased rate of PM application. Applied PM increased the concentrations of leaf and fruit Zn and Cl. Poultry manure applications had a positive effect on the concentrations of leaf Cu, and fruit Mn. The concentrations of Rb and Ce in fruits and Br in fruit and leaves were increased by PM treatments. Applied PM levels had no clear effect on the concentrations of Ba and La in pepper leaves. The leaf Ba was the highest with 10 g kg^?1 PM, and leaf La was higher in 20 and 40 g kg^?1 PM treatments than in the control.  相似文献