Three-dimensional analysis of rodent paranasal sinus cavities from X-ray computed tomography (CT) scans          下载免费PDF全文

Jonathan E. Phillips  Lunan Ji  Maria A. Rivelli  Richard W. Chapman  Michel R. Corboz 《Canadian journal of veterinary research》2009,73(3):205-211

Continuous isometric microfocal X-ray computed tomography (CT) scans were acquired from an AKR/J mouse, Brown-Norway rat, and Hartley guinea pig. The anatomy and volume of the paranasal sinus cavities were defined from 2-dimensional (2-D) and 3-dimensional (3-D) CT images. Realistic 3-D images were reconstructed and used to determine the anterior maxillary, posterior maxillary, and ethmoid sinus cavity airspace volumes (mouse: 0.6, 0.7, and 0.7 mm³, rat: 8.6, 7.7, and 7.0 mm³, guinea pig: 63.5, 46.6 mm³, and no ethmoid cavity, respectively). The mouse paranasal sinus cavities are similar to the corresponding rat cavities, with a reduction in size, while the corresponding maxillary sinus cavities in the guinea pig are different in size, location, and architecture. Also, the ethmoid sinus cavity is connected by a common drainage pathway to the posterior maxillary sinus in mouse and rat while a similar ethmoid sinus was not present in the guinea pig. We conclude that paranasal sinus cavity airspace opacity (2-D) or volume (3-D) determined by micro-CT scanning may be used to conduct longitudinal studies on the patency of the maxillary sinus cavities of rodents. This represents a potentially useful endpoint for developing and testing drugs in a small animal model of sinusitis.  相似文献   

Sorption of tannin and related phenolic compounds and effects on soluble-N in soil     

Jonathan J. Halvorson  Javier M. Gonzalez  Ann E. Hagerman  Jeffrey L. Smith 《Soil biology & biochemistry》2009,41(9):2002-2010

Some tannins, plant-derived polyphenolic compounds, can rapidly affix to soil and affect the solubility of labile soil-N but a more complete understanding of the nature and persistence of tannin-soil interactions is needed. Forest and pasture soils from two depths were treated for 1 h with cool (23 ^°C) water (Control) or solutions that added 10 mg g⁻¹ soil tannic acid (TA), an imprecisely defined mixture of galloyl esters, gallic acid (GA), a phenol, or β-1,2,3,4,6-penta-O-galloyl-d-glucose (PGG), a hydrolyzable tannin. Soluble-C and N, in treatment supernatants, was measured to uncover evidence for sorption of treatments or effects on extraction of soil-N. Significant amounts of soluble-C, added with treatments, were not recovered in supernatants indicating sorption of nearly 90% of the PGG-C, about 75% of the TA-C but less than 25% of the GA-C in surface soil. Disappearance of soluble-C from treatment supernatants was accompanied by a corresponding reduction of total phenolic content. Treatments added a negligible amount of N to soil; but while PGG and TA reduced soluble-N, in extracts from surface soil, GA had little effect. Soluble-N in extracts was composed mainly of organic-N. Effects of tannins persisted in surface soil through 12 washings with hot water (80 ^°C), suggesting the formation of stable complexes with soil. The proportion of initial soil-C and N remaining after all extractions was higher in samples treated with PGG or TA than either the Control or GA treatment. We conclude PGG readily sorbs to soil and reduces the solubility of soil organic-N unlike GA, its simple monomeric constituent. These differences could be especially important near the surface where quantities of soil organic matter and biological activity are comparatively large and most easily affected by management.  相似文献   

Variation of soil respiration at three spatial scales: Components within measurements, intra-site variation and patterns on the landscape     

Jonathan G. Martin  Paul V. Bolstad 《Soil biology & biochemistry》2009,41(3):530-543

Soil respiration is an important component of terrestrial carbon cycling and can be influenced by many factors that vary spatially. This research aims to determine the extent and causes of spatial variation of soil respiration, and to quantify the importance of scale on measuring and modeling soil respiration within and among common forests of Northern Wisconsin. The potential sources of variation were examined at three scales: [1] variation among the litter, root, and bulk soil respiration components within individual 0.1 m measurement collars, [2] variation between individual soil respiration measurements within a site (<1 m to 10 m), and [3] variation on the landscape caused by topographic influence (100 m to 1000 m). Soil respiration was measured over a two-year period at 12 plots that included four forest types. Root exclusion collars were installed at a subset of the sites, and periodic removal of the litter layer allowed litter and bulk soil contributions to be estimated by subtraction. Soil respiration was also measured at fixed locations in six northern hardwood sites and two aspen sites to examine the stability of variation between individual measurements. These study sites were added to an existing data set where soil respiration was measured in a random, rotating, systematic clustering which allowed the examination of spatial variability from scales of <1 m to 100+ m. The combined data set for this area was also used to examine the influence of topography on soil respiration at scales of over 1000 m by using a temperature and moisture driven soil respiration model and a 4 km² digital elevation model (DEM) to model soil moisture. Results indicate that, although variation of soil respiration and soil moisture is greatest at scales of 100 m or more, variation from locations 1 m or less can be large (standard deviation during summer period of 1.58 and 1.28 μmol CO₂ m⁻² s⁻¹, respectively). At the smallest of scales, the individual contributions of the bulk soil, the roots, and the litter mat changed greatly throughout the season and between forest types, although the data were highly variable within any given site. For scales of 1-10 m, variation between individual measurements could be explained by positive relationships between forest floor mass, root mass, carbon and nitrogen pools, or root nitrogen concentration. Lastly, topography strongly influenced soil moisture and soil properties, and created spatial patterns of soil respiration which changed greatly during a drought event. Integrating soil fluxes over a 4 km² region using an elevation dependent soil respiration model resulted in a drought induced reduction of peak summer flux rates by 37.5%, versus a 31.3% when only plot level data was used. The trends at these important scales may help explain some inter-annual and spatial variability of the net ecosystem exchange of carbon.  相似文献   

Genetic variation in a subterranean arthropod (Folsomia candida) as a method to identify low-permeability barriers in an aquifer     

Terrence J. Sullivan  Austin P. Dreyer  Jonathan W. Peterson 《Pedobiologia》2009,53(1):99-105

Folsomia candida (order Collembola), a common soil arthropod, has recently been described living in a shallow (2.5–5.7 m below surface), unconsolidated aquifer in southwestern Michigan. F. candida was haplotyped from 14 wells using inter-simple sequence repeats (ISSRs) markers, and genetic variation in F. candida was used as a bioindicator to identify pore scale to mesoscale migration barriers in the aquifer. With one exception, individual haplotypes were only found in single wells. A significant relationship was identified between interpopulation genetic differentiation and geographic distance, and F. candida exhibits genetic population structuring over a very fine geographic scale (0.65 km²). Monmonier's algorithm was used to identify two most likely subsurface barriers to migration. Hypothesized barriers divided the F. candida populations into three genetically distinct groups, with two groups separated by only 15 m. These groupings are not dependent on groundwater flow direction, and are supported by a minimum spanning network and AMOVA analysis. Because F. candida movement is limited by pore size, these barriers identify local areas of low permeability in the aquifer material. The study suggests that F. candida may serve an important role in identifying geological characteristics and patterns in aquifers that may be difficult to evaluate by other means.  相似文献   

Creosote Contamination in Sediments of the Grey Owl Marina in Prince Albert National Park, Saskatchewan, Canada     

Marlene S. Evans  Kirsten Fazakas  Jonathan Keating 《Water, air, and soil pollution》2009,201(1-4):161-184

The rate at which creosote-treated pilings release polycyclic aromatic hydrocarbons (PAHs) into the environment should diminish with structure age and weathering, and so, it may be assumed that PAH concentrations in the vicinity of old structures (>30 years) may approach background levels. However, this may not be true in cold environments where PAH release and degradation rates are slow and where pilings continue to experience significant physical damage. Moreover, PAHs will remain high in the vicinity of pilings if current and wave action is insufficient to disperse and dilute PAHs over a wider area and/or where PAHs do not become diluted and buried by uncontaminated sediments. This is demonstrated in our investigation of the sediments of the Grey Owl Marina, located in Prince Albert National Park, in central Saskatchewan, Canada. The marina, constructed in the early 1960s, consists of six piers and is protected from strong wave action by a breakwater. PAH concentrations were high in sediments collected under the piers and inside the boat slips, exceeding probable effect levels for several compounds. Various lines of physical and chemical evidence pointed to creosote as being the primary PAH source with a mixture of relatively undegraded and weathered PAHs being present. PAH concentrations decreased rapidly 2 m and further away from the pilings as a result of dilution with increasing dispersal over a broadening area. There was evidence of benthic community impairment, with total abundances negatively correlated with PAH concentrations. According to the Methods for Ranking Contaminated Aquatic Sites on Canadian Federal Properties, areas with the highest hazard scores were under the piers and inside the boat slips, while areas with the lowest hazard scores were >10 m from the pilings. Therefore, remedial actions based on piling and contaminated sediment removal may need to be conducted over only a small area, i.e., within 2 m of the pilings.  相似文献   

A Modeling Approach to Water Quality Management of an Agriculturally Dominated Watershed, Kansas, USA     

Steven Wang  Thomas Stiles  Trevor Flynn  Anthony J. Stahl  Jonathan L. Gutierrez  Robert T. Angelo  Lyle Frees 《Water, air, and soil pollution》2009,203(1-4):193-206

Impairment of water quality is a major concern for streams and rivers in the central USA. Total maximum daily loads (TMDLs) establish a watershed framework and set management targets to alleviate pollution from both point and nonpoint sources. For this study, we have used a hydrologic modeling approach to holistically examine the effect of land use management, urban development, and agricultural practices on sediment and nutrient loadings in an agricultural watershed. Annualized Agricultural Nonpoint Source (AnnAGNPS) simulation indicates that while point source dischargers contribute 8% of total nitrogen (TN) and 24% of total phosphorus (TP) loadings to the Marmaton River, agricultural nonpoint sources are the leading pollution source contributing 55% of TN and 49% of TP loading. Based on TMDL analysis and model simulation, 3% of the watershed area (3,244 ha) needs to be targeted to control TN loading whereas 1% of the total area (1,319 ha) is required for TP reduction management. Managing the TN areas alone can achieve a 57% reduction in the TP load required for the TMDL, whereas managing the targeted TP areas can only provide 30% of the required TN reduction. Areas required both TN and TP management comprise 469 ha. Targeting these areas can achieve approximately 22% of the required TN reduction and 29% of the required TP reduction. Overall, 4,094 ha will require management to achieve water quality goals. This study demonstrates that a modeling approach is needed to effectively address TMDL issues and help identify targeted areas for management.  相似文献   

Can market-based agroforestry germplasm supply systems meet the needs of forest landscape restoration?     

Jonathan P. Cornelius  Andrew Miccolis 《New Forests》2018,49(4):457-469

By late 2017, governments had pledged more than 140 M ha to the global forest landscape restoration (FLR) agenda. Although much FLR will consist of conventional ecological restoration, a substantial proportion will involve agroforestry. The question therefore arises of how the agroforestry germplasm needs of FLR can be met, particularly given its emphasis on species diversity. This paper examines the role of market-based germplasm supply systems. A simple analytic framework is presented, and key demand- and supply-related factors are described. It is suggested that seedling supply and demand at market prices will not necessarily coincide with needs of all farmers nor with the requirements of a particular restoration program, and that market-based germplasm supply systems will therefore often not meet the needs of restoration programs. Implications of these findings are then identified and appropriate responses are suggested. These include those intended to produce shifts in demand or supply curves through addressing the underlying enabling environment, and direct subsidies to tree planting stock prices.  相似文献   

Changes in field dose–response curves for demethylation inhibitor (DMI) and quinone outside inhibitor (QoI) fungicides against Zymoseptoria tritici,related to laboratory sensitivity phenotyping and genotyping assays          下载免费PDF全文

Jonathan J Blake  Paul Gosling  Bart A Fraaije  Fiona J Burnett  Stuart M Knight  Steven Kildea  Neil D Paveley 《Pest management science》2018,74(2):302-313

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Testing a chemical series inspired by plant stress oxylipin signalling agents for herbicide safening activity          下载免费PDF全文

Melissa Brazier‐Hicks  Kathryn M Knight  Jonathan D Sellars  Patrick G Steel  Robert Edwards 《Pest management science》2018,74(4):828-836

BACKGROUND

Herbicide safening in cereals is linked to a rapid xenobiotic response (XR), involving the induction of glutathione transferases (GSTs). The XR is also invoked by oxidized fatty acids (oxylipins) released during plant stress, suggesting a link between these signalling agents and safening. To examine this relationship, a series of compounds modelled on the oxylipins 12‐oxophytodienoic acid and phytoprostane 1, varying in lipophilicity and electrophilicity, were synthesized. Compounds were then tested for their ability to invoke the XR in Arabidopsis and protect rice seedlings exposed to the herbicide pretilachlor, as compared with the safener fenclorim.

RESULTS

Of the 21 compounds tested, three invoked the rapid GST induction associated with fenclorim. All compounds possessed two electrophilic carbon centres and a lipophilic group characteristic of both oxylipins and fenclorim. Minor effects observed in protecting rice seedlings from herbicide damage positively correlated with the XR, but did not provide functional safening.

CONCLUSION

The design of safeners based on the characteristics of oxylipins proved successful in deriving compounds that invoke a rapid XR in Arabidopsis but not in providing classical safening in a cereal. The results further support a link between safener and oxylipin signalling, but also highlight species‐dependent differences in the responses to these compounds. © 2018 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.  相似文献   

Optimal Estimation Versus MCMC for $$\mathrm{{CO}}_{2}$$ Retrievals     

Jenny Brynjarsdottir  Jonathan Hobbs  Amy Braverman  Lukas Mandrake 《Journal of Agricultural, Biological & Environmental Statistics》2018,23(2):297-316

The Orbiting Carbon Observatory-2 (OCO-2) collects infrared spectra from which atmospheric properties are retrieved. OCO-2 operational data processing uses optimal estimation (OE), a state-of-the-art approach to inference of atmospheric properties from satellite measurements. One of the main advantages of the OE approach is computational efficiency, but it only characterizes the first two moments of the posterior distribution of interest. Here we obtain samples from the posterior using a Markov Chain Monte Carlo (MCMC) algorithm and compare this empirical estimate of the true posterior to the OE results. We focus on 600 simulated soundings that represent the variability of physical conditions encountered by OCO-2 between November 2014 and January 2016. We treat the two retrieval methods as ensemble and density probabilistic forecasts, where the MCMC yields an ensemble from the posterior and the OE retrieval result provide the first two moments of a normal distribution. To compare these methods, we apply both univariate and multivariate diagnostic tools and proper scoring rules. The general impression from our study is that when compared to MCMC, the OE retrieval performs reasonably well for the main quantity of interest, the column-averaged \(\mathrm{{CO}}_{2}\) concentration \(X_{\mathrm{{CO}}_{2}}\), but not for the full state vector \(\mathbf {X}\) which includes a profile of \(\mathrm{{CO}}_{2}\) concentrations over 20 pressure levels, as well as several other atmospheric properties.Supplementary materials accompanying this paper appear on-line.  相似文献