Molecular mapping of genomic regions harboring QTLs for stalk rot resistance in sorghum   总被引：1，自引：0，他引：1  

P. Srinivasa Reddy  B. Fakrudin  Rajkumar  S. M. Punnuri  S. S. Arun  M. S. Kuruvinashetti  I. K. Das  N. Seetharama 《Euphytica》2008,159(1-2):191-198

Stalk rot, also called as charcoal rot in India, caused by Macrophomina phaseolina, is an economically important, soil borne disease in major sorghum growing areas across the world. A population of F₉ generation recombinant inbred lines (RILs), derived from IS22380 (susceptible) × E36-1 (resistant), along with parents were phenotyped in sick plots at two locations (Dharwad and Bijapur, Karnataka, India). A total of 85 polymorphic marker loci (62 nuclear and 4 genic SSRs, 19 RAPDs) was available for the construction of genetic map, spanning 650.3 cM in all the ten linkage groups. Analysis with QTL Cartographer (2.5b), adopting composite interval mapping method (LOD > 2.0) at both locations, revealed 5 QTLs at Dharwad and 4 QTLs at Bijapur locations for the component traits of charcoal rot disease resistance. QTLs for number of internodes crossed, length of infection and per cent lodging accounted for 31.83, 10.76 and 18.90 per cent at Dharwad location and 14.87, 10.47 and 26.44 per cent phenotypic variability at Bijapur location, respectively. The QTLs for number of internodes crossed by the rot, length of infection and percent lodging were common across two locations. These QTLs, consistent over environments for the component traits, are likely to assist in marker-assisted selection (MAS) for charcoal rot resistance in sorghum.  相似文献   

Integrating marker assisted background analysis with foreground selection for identification of superior bacterial blight resistant recombinants in Basmati rice     

S. Gopalakrishnan    R. K. Sharma    K. Anand Rajkumar  M. Joseph    V. P. Singh    A. K. Singh    K. V. Bhat    N. K. Singh    T. Mohapatra 《Plant Breeding》2008,127(2):131-139

Basmati rice is highly susceptible to bacterial blight (BB) caused by Xanthomonas oryzae pv. oryzae. Transfer of BB resistance genes from non‐Basmati sources to Basmati through cross‐hybridization requires strict monitoring for recovery of the desirable Basmati quality traits in the recombinants, which show complex inheritance pattern. We integrated background analysis using mapped microsatellite markers with foreground selection to identify superior lines that combine useful genes from a non‐Basmati BB resistance donor line IRBB55 with grain and cooking quality characteristics of the popular Basmati rice variety ‘Pusa Basmati 1’ (PB 1) employing backcross pedigree strategy. Foreground selection using linked markers ensured presence of two genes, xa13 and Xa21 for BB resistance from IRBB55, and the recurrent parent PB 1 allele for the waxy locus giving intermediate amylose content and maintainer allele at fertility restorer locus in the BC₁F₅ recombinants. Background analysis enabled selection of recombinants with recurrent parent genome to the extent of 86.3% along with the quality traits. The extent of introgression of non‐Basmati donor chromosome segments in the superior selections was estimated to be < 7.8 Mb and < 6.7 Mb in the xa13 and Xa21 linked genomic regions, respectively. Association mapping identified three quantitative trait loci, one each for 1000‐grain weight, fertile grains/panicle and cooked kernel length. The backcross‐pedigree breeding strategy facilitated recovery of additional desirable characteristics from the donor in some of the selections. The elite selection Pusa 1460‐01‐32‐6‐7‐67 with maximum genomic background and quality characteristics of the recurrent Basmati parent gave resistance reaction against BB, similar to that of the non‐Basmati resistant check variety and recorded an yield advantage of 11.9% over the best check in the multiplication agronomic trial in the Basmati growing region of India. This line, which has been released as a new variety in the name of ‘Improved Pusa Basmati 1’ for commercial cultivation in India, is an example of successful application of marker assisted selection to variety development.  相似文献   

Phenotypic and Genetic Characterization of Western Prairie Clover Collections From the Western United States     

Kishor Bhattarai  B. Shaun Bushman  Douglas A. Johnson  John G. Carman 《Strength and Conditioning Journal》2010,63(6):696-706

Few North American legumes are available for rangeland revegetation in the semiarid western United States. Western prairie clover (Dalea ornata [Douglas ex Hook.] Eaton & J. Wright) is a perennial legume with desirable forage characteristics and is distributed in the northern Great Basin, Snake River Basin, and southern Columbia Plateau. Understanding the genetic and ecotypic variability of this species is a prerequisite for developing populations suitable for revegetation purposes. To address this need, we established two common-garden plots of western prairie clover from 22 sites in Idaho, Oregon, and Washington. Significant variation was detected among the collections for all traits measured. Among the measured traits, flowering date was correlated with collection-site temperature and elevation. Population structure estimates from 474 amplified-fragment length polymorphism markers resulted in two distinct, genetically differentiated groups and a third admixed group, and flowering date played a significant role in discriminating those genetic-based groupings of collections. Positive correlations were observed between phenotypic and genetic distance matrices (r = 0.33, P = 0.005), phenotypic and geographic distance matrices (r = 0.35, P = 0.002), and genetic and geographic distance matrices (r = 0.31, P = 0.009). Based on these results, we recommend that two germplasm sources of western prairie clover be developed for use across the collection area, one from the Deschutes River region and the other encompassing Idaho, Washington, and eastern Oregon collection sites.  相似文献   

Effect of paclobutrazol and salinity on ion leakage,proline content and activities of antioxidant enzymes in mango (Mangifera indica L.)     

Manish Srivastav  Arun Kishor  Anil Dahuja  R.R. Sharma 《Scientia Horticulturae》2010

A study was conducted to investigate the effects of paclobutrazol (PBZ) on ion leakage (IL), proline content and activities of antioxidant enzymes like superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD) of 1-year-old ‘Olour’ mango plants subjected to NaCl stress. Plants were treated with two levels of salt, i.e., 0.0 g NaCl (control) and 25 g NaCl/25 kg soil and three levels of paclobutrazol (PBZ) solution (0.0 (control), 750 and 1500 mg/l). Ion leakage, proline content and activities of antioxidant enzymes were significantly altered by both salinity and PBZ treatments. Results indicated that PBZ (1500 mg/l) mitigated the salinity stress and reduced ion leakage of mango seedlings by 64% over non-PBZ-treated salinised plants. PBZ upregulated the endogenous proline content and salinised plants treated with PBZ (1500 mg/l) had 17% higher proline content than salinised plants without PBZ treatment. Higher antioxidant enzyme activity was also observed in salinised plants treated by PBZ than salinised plants without PBZ treatments. Moreover, higher dose of PBZ (1500 mg/l) resulted in higher activity of these enzymes in mango leaves. In comparison to salinised plants without PBZ treatment, salinised plants treated with PBZ (1500 mg/l) had higher SOD (24%), CAT (46%) and POD (163%) activities. Our results suggest that PBZ application under salt stress conditions alters the equilibrium between free radical production and enzymatic defense reactions in mango by enhancing the proline content and free radical scavenging capacity.  相似文献   

Studies on the occurrence of infectious myonecrosis virus in pond‐reared Litopenaeus vannamei (Boone, 1931) in India          下载免费PDF全文

A S Sahul Hameed  S Abdul Majeed  S Vimal  N Madan  T Rajkumar  S Santhoshkumar  S Sivakumar 《Journal of fish diseases》2017,40(12):1823-1830

Whiteleg shrimp, Litopenaeus vannamei, with clinical sign of muscle opaqueness with reddish colour at the distal abdominal segments were observed in farms located in West Bengal State, India. The mortality of shrimp in all disease outbreak ponds ranged from 20% to 50%, and mortality increased gradually. The RT‐PCR assay of these samples using primer sets specific to infectious myonecrosis virus (IMNV) revealed its presence in the disease outbreak ponds. The IMNV infection was reproduced in healthy shrimp by intramuscular injection to satisfy River's postulates. The virus caused mortality in intramuscularly challenged shrimp, but failed to cause mortality by oral route. Tissue distribution of IMNV in infected shrimp by RT‐PCR assay revealed the presence of this virus in haemolymph, gill, hepatopancreas and muscle. This study confirms that the disease outbreak which occurred in the shrimp farms located at Purba Medinipur District, West Bengal, India, was due to IMNV.  相似文献   

Mud crab,Scylla tranquebarica (Decapoda: Portunidae), a new host for the white spot syndrome virus     

Ayyaru Gopalakrishnan  Mayalagu Rajkumar  Jun Sun  Min Wang  Kesavanandha Senthil Kumar 《Aquaculture Research》2011,42(2):308-312

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Effect of feeding higher concentrations of limiting amino acids on performance,slaughter variables and nitrogen retention in broiler chicken fed graded levels of toasted guar (Cyamopsis tetragonoloba) meal     

S. V. Rama Rao  M. V. L. N. Raju  B. Prakash  U. Rajkumar  T. Srilatha  E. P. K. Reddy 《British poultry science》2018,59(5):539-544

ABSTRACT

1. An experiment was conducted to study the effect of supplementing higher concentrations (100% vs. 110%) of critical amino acids (CAA) on performance (body weight gain – BWG, feed efficiency – FE), slaughter variables and nitrogen retention in broiler chicken (1–6 weeks of age) fed graded levels of toasted guar meal (TGM) as a protein source in diets.

2. The TGM was included at five graded concentrations (0, 50, 100, 150 and 200 g/kg) in iso-caloric and iso-protein diets with either the recommended concentration (100%) of CAA (lysine, total sulphur amino acids, threonine, tryptophan and valine) or at 10% higher (110%) concentration. A metabolism trial of 3-day duration was conducted during 6th week of age to study nitrogen retention.

3. The TGM levels and CAA concentration at 21 or 42 d of age did not influence BWG, FI and FE. BWG was not affected with inclusion of TGM up to 100 g/kg in starter and overall production (1–42 d of age) phases. The FE improved with TGM supplementation during starter phase, while at the end of experiment (42 d), FE was depressed by inclusion of TGM in dose dependant manner. All performance variables improved with increase in concentration of CAA from 100% to 110%.

4. Breast meat weight improved and abdominal fat weight reduced with higher levels of CAA in diet. Retention of nitrogen reduced with increase in level of TGM in broiler diet. Increasing concentrations of CAA in diet improved nitrogen retention.

5. It was concluded that TGM could be incorporated up to 100 g/kg with 100% CAA and up to 150 g/kg with 110% CAA without affecting performance. Increasing CAA concentration (110%) in diets significantly improved BWG and FE (21 and 42 d), breast meat weight and nitrogen retention in broiler chicken.  相似文献   

Survivability,immunity, growth and production traits in indigenous and White Leghorn breeds of chicken     

S. Haunshi  A. K. Burramsetty  T. R. Kannaki  U. Rajkumar 《British poultry science》2019,60(6):683-690

ABSTRACT

1. The survivability, innate and adaptive immunity, growth and production traits up to 72 weeks of age were determined in Ghagus, Nicobari (unimproved indigenous) and White Leghorn (WLH) breeds and the study investigated links between innate and adaptive immunity and survivability and production traits.

2. At 20 and 40 weeks of age, there was a significant effect of breed on innate immunity assessed by measuring titres of natural antibody (NAb) binding to rabbit red blood cells (RRBC) and adaptive immunity assessed by measuring specific antibody titre (SpAb) to Newcastle disease virus.

3. Highest survivability was in WLH (91.6%) followed by Nicobari (87.1%) and Ghagus (82.9%) breeds. Growth traits at different ages were higher (P< 0.001) in Ghagus followed by WLH and Nicobari breeds. Egg production up to 72 weeks was higher (P < 0.001) in WLH followed by Nicobari and Ghagus breeds, whereas egg weight at different ages was higher (P < 0.001) in WLH than Ghagus and Nicobari breeds.

4. NAb titres measured at 20 weeks were significantly (P = 0.002) associated with the survivability of hens during 20 to 72 weeks of age. Breed-wise analysis showed a significant (P = 0.019) association between NAb titres at 20 weeks and survivability in the Ghagus breed. Furthermore, NAb titres at 20 weeks were higher in hens which survived to 72 weeks compared with those that died (P = 0.002).

5. Measuring NAb titres to RRBC is quick, economical and simple. This method has potential to be used in a breeding programme to increase survivability of laying hens.  相似文献   

Relationships among seed quality characteristics in a collection of western wheatgrass germplasms     

Joseph G. Robins  Kishor Bhattarai  B. Shaun Bushman  Steven R. Larson 《Euphytica》2012,184(1):131-139

Although western wheatgrass [Pascopyrum smithii (Rydb.)] is an important perennial grass species for agriculture and conservation management in central and western North America, its lack of adequate seed production and seedling vigor limits its effectiveness. To address the weaknesses a study was conducted to assess rhizome spread, seed production, seed weight, germination percentage, and emergence rate of seed produced from 48 western wheatgrass cultivars and germplasm accessions at a field site near Nephi, UT, USA during 2007 and 2008. The western wheatgrass cultivars had approximately two times higher seed production than the germplasm accessions during both 2007 and 2008 and also had higher seed weight in 2007 and emergence rate in 2008. The germplasm accessions had higher seed weight in 2008. For the remaining traits there were no differences among the different germplasm sources. Based on principle component analysis a subset of cultivars and germplasm accessions with high seed production and emergence rate were identified that could be used to produce improved cultivars and germplasms. There was little evidence of strong relationship between geographic, genetic, and phenotypic distances among the various lines examined. Additionally, based on genetic marker data, a subset of lines was grouped into three populations. Based on these results, selection among lines could occur to maximize agricultural performance regardless of site of origin, or within population selection could be practiced to meet conservation goals of minimizing hybridization among populations.  相似文献   

Response of wheat to foliar phosphorus treatments under field and high temperature regimes     

Kishor Sherchand  Gary M. Paulsen 《Journal of plant nutrition》2013,36(12):1171-1181

Potassium phosphate (KH₂PO₄) is applied commonly in dilute foliar sprays to wheat (Triticum aestivum L.) in China. Yield responses to foliar P sources have also been reported for several crop species in other countries. Experiments were conducted to determine efficacy of four P sources and four rates of KH₂PO₄ as foliar treatments on wheat under field conditions and KH₂PO₄ under two controlled temperature regimes. Grain yields were increased most by KH₂PO₄ followed by β‐glycerophosphate and tripolyphosphate; only phytic acid was ineffective. All rates of 1 to 4 kg ha^‐1 KH₂PO₄ increased grain yields. Foliar KH₂PO₄ applications increased grain weight early under low controlled temperatures, but did not affect final grain weight under either temperature regime. Beneficial effects of foliar P treatments were associated with increased plant P content, which may have increased cell sugar content and protected membranes. Although preliminary results are favorable, additional research is needed to determine optimum methods and conditions for treating wheat with foliar P sources.  相似文献