The N-end rule in bacteria   总被引：53，自引：0，他引：53  

J W Tobias  T E Shrader  G Rocap  A Varshavsky 《Science (New York, N.Y.)》1991,254(5036):1374-1377

The N-end rule relates the in vivo half-life of a protein to the identity of its amino-terminal residue. Distinct versions of the N-end rule operate in all eukaryotes examined. It is shown that the bacterium Escherichia coli also has the N-end rule pathway. Amino-terminal arginine, lysine, leucine, phenylalanine, tyrosine, and tryptophan confer 2-minute half-lives on a test protein; the other amino-terminal residues confer greater than 10-hour half-lives on the same protein. Amino-terminal arginine and lysine are secondary destabilizing residues in E. coli because their activity depends on their conjugation to the primary destabilizing residues leucine or phenylalanine by leucine, phenylalanine-transfer RNA-protein transferase. The adenosine triphosphate-dependent protease Clp (Ti) is required for the degradation of N-end rule substrates in E. coli.  相似文献   

Comparison of soil phosphorus extraction methods regarding their suitability for organic farming systems     

Daniel J. Wanke  Jasmin Heichel  Sabine Zikeli  Torsten Müller  Tobias Edward Hartmann 《植物养料与土壤学杂志》2023,186(5):599-608

Background

Organic farmers frequently report sufficient yield levels despite low or even very low soil phosphorous (P) contents questioning the applicability of widely used laboratory methods for soil P testing for organic farming.

Aims

The aim of this study was to compare the validity of a broad range of different soil extraction methods on soils under organic management from South West Germany and to test the correlation of the measured soil P concentration with plant offtake.

Methods

Twenty-two soil samples of eight different organic farms were extracted with different solutions: (1) water, (2) CAL, (3) Olsen, (4) Mehlich 3, (5) Bray P1, (6) Bray P2, (7) NaOH+Na₂EDTA, and (8) total P. The results were then correlated with above ground plant P.

Results

Spearman's rank correlation coefficient (r_s) of correlations between above ground plant P and extractable soil P (Water-P, CAL-P, and Olsen-P [+active charcoal {+AC}]) determined with ICP-OES were strong (0.94, 0.90, and 0.93, respectively). Among the tested methods, above ground plant P showed a strong correlation with CAL-P as detected by ICP-OES (r_s = 0.90) and colorimetry (r_s = 0.91). The comparison of CAL-P data provided by farmers and CAL-P analyzed during this research showed discrepancies between the results.

Conclusions

The results of this study indicate that the CAL method can be used in organic farming despite a low extraction of organic P (P_org). Furthermore, it is recommended for farmers to take soil samples for analyses regularly and interpret changes in P in the long-term instead of interpreting individual samples.  相似文献   

Large-scale biotechnological production of the antileukemic marine natural product sorbicillactone A          下载免费PDF全文

Bringmann G  Gulder TA  Lang G  Schmitt S  Stöhr R  Wiese J  Nagel K  Imhoff JF 《Marine drugs》2007,5(2):23-30

In the search for novel bioactive compounds from sponge-derived microorganisms, we have recently identified two structurally and biosynthetically unprecedented fungal metabolites, the novel-type alkaloids sorbicillactone A and sorbicillactone B. Sorbicillactone A is active against leukemia cells without showing notable cytotoxicity. Therefore, we have developed an efficient process for its biotechnological production and isolation on a large scale supplying sufficient material for the ongoing preclinical investigations and structure-activity relationship (SAR) studies.  相似文献   

Food web feedbacks drive the response of benthic macrofauna to bottom trawling     

Karen E. van de Wolfshaar  P. Daniël van Denderen  Tim Schellekens  Tobias van Kooten 《Fish and Fisheries》2020,21(5):962-972

Bottom trawl fisheries have significant effects on benthic habitats and communities, and these effects have been studied intensively in the last decades. Most of these studies have related the changes in benthic community composition to direct effect of trawl gears on benthos, through imposed mortality. This line of argumentation ignores the fact that benthic organisms themselves form a complex food web and that bottom trawling may trigger secondary effects through this food web. We studied the potential consequences of such food web effects using a model of benthic predators, filter feeders, deposit feeders and fish. Our analysis shows how inclusion of ecological interactions complicates the relationship between bottom trawling intensity and the state of the benthic community and causes a non‐linear and non‐monotonic response of the benthic community to trawling. This shows that indirect food web effects can fundamentally alter the response of a benthic ecosystem to bottom trawling, compared to the direct effects of mortality. In light of our results, we argue that indicators of fishing impact on benthos need to account for positive as well as negative effects of bottom trawling, in order to accurately quantify the impact. Our findings highlight that understanding the food web ecology of the benthic ecosystem is crucial for understanding and predicting the effects of trawling on the seafloor. Work that promotes such understanding of the food web ecology seems a more productive research strategy than conducting ever more empirical trawling effect measurements.  相似文献