<Emphasis Type="Italic">In silico</Emphasis> genomic subtraction guides development of highly accurate,DNA-based diagnostics for <Emphasis Type="Italic">Ralstonia solanacearum</Emphasis> race 3 biovar 2 and blood disease bacterium     

Ryo Kubota  Mark A. Schell  Gabriel D. Peckham  Joanne Rue  Anne M. Alvarez  Caitilyn Allen  Daniel M. Jenkins 《Journal of General Plant Pathology》2011,77(3):182-193

New rapid diagnostic methods are urgently needed to discriminate the quarantine pathogen Ralstonia solanacearum (Rs) race 3 biovar 2 (R3B2) from other populations of Rs that lack the adaptation to cause bacterial wilt disease in temperate regions. We used an in silico bioinformatic approach to identify several genome sequences potentially specific to R3B2 strains. Primer sets were designed to PCR-amplify sequences in these regions, and four sets were ultimately shown to be >99% accurate for detection of R3B2 strains. On the basis of these results, several primers were designed to enable development of a loop-mediated isothermal amplification assay that was rapid, technologically simple, and essentially 100% accurate for identification of R3B2 when applied to a comprehensive collection of geographically diverse Rs strains. We fortuitously found that a sequence in one of the “R3B2-specific” regions has ~90% identity to a sequence present in strains of the blood disease bacterium (BDB), a member of the Rs species complex that infects banana. Alignments of these sequences allowed design of a second PCR primer set that proved 100% accurate for identification of BDB strains when tested on the 22 BDB strains available to us. These results demonstrate the power of in silico genomic subtraction for rapid identification of population-specific DNA sequences and for the development of simple, reliable detection methods for Rs subpopulations.  相似文献   

华北农业高产粮区地下水硝酸盐污染环境价值损失评估技术研究——以山东省桓台县为例   总被引：6，自引：0，他引：6  

刘光栋  吴文良  靳乐山  Gabriel Gulis 《中国生态农业学报》2005,13(2):130-133

应用人力资本法、防护支出法和支付意愿调查法评估了华北高产粮区桓台县地下水农业面源硝酸盐污染的环境经济损失,并分析了不同评估技术对农业面源硝酸盐污染地下水环境价值损失评估的适用性,其适用性优先序为防护支出法的深井工程法>脱硝工程法≥人力资本法>支付意愿调查法。2 0 0 2年该县由农业地下水硝酸盐污染造成的年环境价值损失约为880万元(86 0 .8～1170 .1万元/浕) ,占当年农业总产值的1.1%～1.5 %。  相似文献   

Mercury contamination in the Brazilian Amazon. Environmental and occupational aspects     

A. C. Barbosa  A. A. Boischio  G. A. East  I. Ferrari  A. Gonçalves  P. R. M. Silva  T. M. E. da Cruz 《Water, air, and soil pollution》1995,80(1-4):109-121

Mercury (Hg) contamination of miners, riparian and Indian populations and fish in the Amazon region, due to gold extracting activities, has been studied. Samples of hair, urine, and blood of Indians and prospectors, and hair from riparian fish-eating population and fishes from Madeira river, respectively, were collected and analyzed by Cold Vapor, Atomic Absorption Spectrometry (CV-AAS) techniques. The results obtained showed that the aquatic food chains in the Amazonian ecosystems are contaminated by methylmercury (MeHg), exposing Indians, prospectors and riverines to thr risk of severe health hazard. The highest levels of contamination, based upon hair analysis, were found in riparian of the Madeira river, followed by Cuniã Lake population, Indians (Fresco river) and prospectors, in that order. Blood analysis showed 59% of the samples from Indians and 33% from prospectors with Hg contents above 10 ng mL^?1. Analysis of urine, on the other hand, showed 44% of Indians with Hg levels below the detection limit (d.l.), and 30% above 20 ng mL^?1, whereas 38% of the prospectors presented Hg concentrations over 20 ng mL^?1, and 20% below the d.l. These results prove that prospectors, who hardly ever eat fish but are badly exposed to inorganic Hg vapor, are ocupationally contaminated, while the rest of the populations under survey are exposed to environmental contamination by Hg, through polluted fish ingestion.  相似文献   

Modified method for the analysis of free fatty acids in fish     

Bernárdez M  Pastoriza L  Sampedro G  Herrera JJ  Cabo ML 《Journal of agricultural and food chemistry》2005,53(6):1903-1906

The objective of this study was the development of a method for the quantification of free fatty acids (FFA) using less aggressive reactants against the handler and the environment than those used in the classic method of Lowry and Tinsley. The modified procedure is a variation of the Lowry and Tinsley method employing cyclohexane in place of benzene. The use of benzene is prohibited in certain work processes and laboratories, and the competent authority in each country is actively promoting research into harmless or less harmful products that could replace benzene. A comparison with the traditional AOCS titration method for oil analysis was performed. FFA content in mackerel frozen at -10 degrees C was measured according to the three methods over a 12 month period. The results showed similar values, and good correlations were obtained.  相似文献   

Abundant PrP(CWD) in tonsil from mule deer with preclinical chronic wasting disease.     

Katherine I O'Rourke  Dongyue Zhuang  Amy Lyda  Gabriel Gomez  Elizabeth S Williams  Wenbin Tuo  Michael W Miller 《Journal of veterinary diagnostic investigation》2003,15(4):320-323

A monoclonal antibody dot-blot assay was used to evaluate detergent lysates of tonsil tissue from mule deer to detect PrP(CWD), the marker for the cervid transmissible spongiform encephalopathy chronic wasting disease (CWD). Samples of formalin-fixed brain and tonsil tissues from mule deer were examined for PrP(CWD) using immunohistochemistry (IHC) with Mab F99/97.6.1, the gold standard for diagnosis of preclinical CWD. The contralateral tonsil from each of the 143 deer was prepared for confirmatory IHC and as a 10% (wt/vol) detergent lysate without purification or enrichment steps for monoclonal antibody dot-blot assay. PrP(CWD) was detected by dot-blot assay in 49 of 50 samples considered positive by IHC. Forty-eight of the positive samples were evaluated with a quantitative dot-blot assay calibrated with recombinant PrP. Tonsillar PrP(CWD) concentrations ranged from 34 to 1,188 ng per 0.5 mg starting wet weight of tissue. The abundant PrP(CWD) in mule deer tonsil will facilitate development and validation of high-throughput screening tests for CWD in large populations of free-ranging deer.  相似文献   

Effect of Anticoagulants and Sampling Time on Results of Progesterone Determination in Canine Blood Samples     

J Thuróczy  A Wölfling  A Tibold  L Balogh  GA Jánoki  L Solti 《Reproduction in domestic animals》2003,38(5):386-389

The concentration of plasma progesterone was measured by ELISA, in serum and samples prepared with three different anticoagulant agents – namely ethylenediaminetetraacetic acid (EDTA), heparine and sodium fluoride oxalate potassium(NaFK). Forty clinically healthy bitches were selected based on the signs of pro‐oestrus or oestrus. Values of progesterone concentration were significantly higher in serum than in EDTA‐plasma (p < 0.0005); heparin‐plasma (p < 0.05) and NaFK‐plasma (p < 0.005). During pro‐oestrus and oestrus until the time of ovulation, progesterone exhibited a conspicuous and statistically verified diurnal pattern (p < 0.05), its serum concentration being higher during 6.00–7.00 p.m. than 8.00–9.00 a.m. By the time of ovulation tendency of higher p.m. progesterone level reverses and from this point on the a.m. progesterone concentration is higher. The results of these experiments indicate that the concentration of canine progesterone assayed with ELISA may be affected by the time of collection and the method of preservation used.  相似文献   

The relationship between carcass characteristics,plasma hormones and metabolites in young fattening bulls     

L. Istasse  C. Van Eenaeme  A. Gabriel  A. Clinquart  G. Maghuin-Rogister  J. M. Bienfait 《Veterinary research communications》1990,14(1):19-26

Six Belgian Blue bulls (double-muscled type) and six Friesian bulls were offered a fattening diet for 34 weeks. Plasma samples were obtained once a week and also every 20 min over a 24 h period, 7 weeks before slaughter.No differences were observed between the breeds in plasma glucose, urea and free amino nitrogen concentrations, while creatinine was significantly higher in the Belgian Blue bulls. Tri-iodothyronin, tetra-iodothyronin, insulin-like growth factor 1, insulin and testosterone concentrations were higher in the Holstein group. In contrast, the Belgian Blue bulls appeared to produce more growth hormone. The slaughter weight, carcass weight, dressing percentage and proportion of lean meat were significantly higher in the Belgian Blue group. The characteristics of muscle mass (carcass weight, dressing percentage and proportion of lean meat) were positively correlated with creatinine and with the total peak area or peak amplitude of growth hormone. The insulin concentration was positively correlated with the proportion of adipose tissue in the carcass and negatively correlated with the proportion of muscle. There were no correlations between the carcass characteristics and insulin-like growth factor 1 or testosterone. No further information was provided when the ratios of the hormones were correlated with carcass characteristics.  相似文献   

The survival of platypus in captivity: a reappraisal with recommendations for veterinary management and future research     

M. SERENA  GA WILLIAMS 《Australian veterinary journal》1993,70(2):63-65

SUMMARY: Data are presented on the duration of survival of platypus held in the collections of the 5 Australian zoos displaying the species over the period 1987–1991. Of 10 living platypus, five had survived for 7 or more years. Similarly, of 10 captive animals that died during the period, six had survived for 6 or more years. Five purpose-caught animals were integrated into captive collections over the period; all of these were alive at the end of 1991. The high survival of captive platypus documented in this study contrasts with the conclusion of Whittington (1991) that the duration of survival of platypus in captivity is generally short. This primarily reflects differences in the nature of the two sets of data: Whittington's analysis was based on incomplete records dating back to 1934, and also categorised as managed in captivity those wild platypus that died at zoos while under veterinary care. A series of recommendations on current captive management issues includes the need for improved veterinary knowledge of platypus.  相似文献   

Relation of lactose levels in milk and indicators of mammary gland health in the first third of lactation]     

O Hanus  I Zvácková  V Gencurová  B Gabriel 《Veterinární medicína》1992,37(11):595-604

A total of 662 bucket milk samples from cows of two breed groups were examined: red and white breed = Bohemian Pied cattle with different genetic proportions of Ayrshire and Red Holstein improvement breeds; black and white breed = Black and White Lowland breed and different degree of absorptive crossing with a genetic proportion of the Holstein breed. Samples of daily milk yields were taken in the first three months of lactation once a month within a year. A possibility of using lactose content as an auxiliary indicator for detection of the mammary gland secretion disorders in the initial lactation stage was evaluated. The average values of the different indicators and their variability are summarized in Tab. I showing also the significance in a statistical model of included effects. Lactose content (L) was 4.88 +/- 0.20%, chloride content (Cl-) 113.7 +/- 22.4 mg/100 ml, somatic cell (SC) count 474 +/- 805 thousand/ml, SC count log corresponds to the geometrical mean of 234 thousand/ml, titratable acidity (SH) 7.34 +/- 0.83 x 2.5 mmol/l, chloride-lactose ratio (ClL) 2.27 +/- 0.51, conductivity (gamma) 442.4 +/- 34.5 mS/m and mastitis test (MT-NK) 0.72 +/- 1.18. The efficiency of the used statistical model was highest for Cl- content (Tab. I, R2 = 0.41), and it was lowest for SC counts (R2 = 0.07), while it increased to the twofold value (R2 = 0.15) after logarithmic transformation of SC counts. The breed group exerted a significant effect on Cl-, SC, log SC, SH, ClL, gamma and MT-NK (Tab. I). The breed group of red and white cows (Tab. II) had higher component contents and better indicators of the udder health state (Cl-, SC, log SC, ClL, gamma and MT-NK). The month of lactation influenced significantly SC, log SC, SH and gamma (Tab. I). A decrease in SC counts with the accruing month of lactation was observed (Tab. II), the trend of gamma and SH was opposite. The effect of lactation number was found to be significant for L, SC, log SC, SH, ClL, gamma and MT-NK (Tab. I). A tendency of a gradual decrease with the lactation number was observed in these indicators: L, SH, proteins and solids-non-fat (Fig. 1), while Cl-, gamma and ClL showed an opposite tendency. The year season influenced significantly L, log SC, SH, ClL, gamma and MT-NK (Tab. I, Fig. 2).(ABSTRACT TRUNCATED AT 400 WORDS)  相似文献   

Evaluation of a regimen using a progesterone releasing intravaginal device (CIDR) and PMSG as a treatment for post partum anoestrus in dairy cattle     

TF. JUBB  P. BRIGHTLING  J. MALMO†  MT. LARCOMBE  GA. ANDERSON  SJ. HIDES‡ 《Australian veterinary journal》1989,66(10):334-336

Anoestrous dairy cows in seasonally calving herds in the Macalister Irrigation District of Gippsland, Victoria were treated at the start of the mating period with a progesterone releasing intravaginal device (CIDR). The CIDR was inserted for 7 days and 400 IU of PMSG was injected intramuscularly at removal. There was no clinically useful difference among cows receiving the CIDR, a placebo and untreated cows in the interval from treatment to either first oestrus or conception, the conception rate to first service or percent pregnant by the end of mating. Analyses of data from 2-year-old cows, older cattle, cows calved at least 45 days or cows calved at least 55 days and cows treated 3 weeks after the start of mating did not show improved reproductive performance following treatment with the CIDR.  相似文献