Inferring phenotypic causal structure among farrowing and weaning traits in pigs     

Toshihiro Okamura  Kazuo Ishii  Motohide Nishio  Guilherme J. M. Rosa  Masahiro Satoh  Osamu Sasaki 《Animal Science Journal》2020,91(1)

Direct selection for litter size or weight at weaning in pigs is often hindered by external interventions such as cross‐fostering. The objective of this study was to infer the causal structure among phenotypes of reproductive traits in pigs to enable subsequent direct selection for these traits. Examined traits included: number born alive (NBA), litter size on day 21 (LS21), and litter weight on day 21 (LW21). The study included 6,240 litters from 1,673 Landrace dams and 5,393 litters from 1,484 Large White dams. The inductive causation (IC) algorithm was used to infer the causal structure, which was then fitted to a structural equation model (SEM) to estimate causal coefficients and genetic parameters. Based on the IC algorithm and temporal and biological information, the causal structure among traits was identified as: NBA → LS21 → LW21 and NBA → LW21. Owing to the causal effect of NBA on LS21 and LW21, the genetic, permanent environmental, and residual variances of LS21 and LW21were much lower in the SEM than in the multiple‐trait model for both breeds. Given the strong effect of NBA on LS21 and LW21, the SEM and causal information might assist with selective breeding for LS21 and LW21 when cross‐fostering occurs.  相似文献   

Geographic distribution of Waxy gene SNPs and indels in foxtail millet, Setaria italica (L.) P. Beauv.     

Takehiro Hachiken  Kei Sato  Takahiro Hasegawa  Katsuyuki Ichitani  Makoto Kawase  Kenji Fukunaga 《Genetic Resources and Crop Evolution》2013,60(4):1559-1570

To elucidate diversity and evolution of the Waxy gene in foxtail millet, Setaria italica, we analyzed sequence polymorphism of Waxy gene in 83 foxtail millet landraces collected from various regions covering the entire geographical distribution of this millet in Europe and Asia. We found a unique geographic distribution pattern at the sequence level of gene haplotypes and also found a large diversity in East Asian landraces. We also found a higher degree of genetic polymorphism in a non-waxy phenotype than in other low amylose types, supporting the hypothesis that low amylose types recently originated from non-waxy type.  相似文献   

Effect of boiled barley-rice-feeding in hypercholesterolemic and normolipemic subjects     

Sachie Ikegami  Masako Tomita  Setsuko Honda  Momoko Yamaguchi  Reiko Mizukawa  Yoko Suzuki  Keiko Ishii  Saeko Ohsawa  Nanako Kiyooka  Mitsuru Higuchi  Shuhei Kobayashi 《Plant foods for human nutrition (Dordrecht, Netherlands)》1996,49(4):317-328

Barley contains approximately 10% dietary fiber and is easily cooked with rice, the dominant cereal in Japan, to increase the intake of dietary fiber. This research involved three experiments to examine the influence of barley on blood lipids in human subjects. All subjects received a boiled barley-rice (50/50 w/w mix) supplement two times per day in place of rice for 2 or 4 weeks. In the normolipemic subjects, serum lipids were unaffected by the ingestion of barley for 4 weeks. In twenty hypercholesterolemic men aged 41 ± 5 years, the ingestion of barley was associated with a significant fall in serum total cholesterol, LDL-cholesterol, phospholipids and LDL and VLDL-lipoproteins. In seven mildly hypercholesterolemic women aged 56±7 years, a significant improvement of serum lipid profiles was observed. The present study suggests the possibility that the ingestion of barley-rice could lower serum lipids in hypercholesterolemic subjects.  相似文献   

Effect of free-air CO₂ enrichment on the storage of carbohydrate fixed at different stages in rice (Oryza sativa L.)     

Haruto Sasaki  Takahiro Hara  Satoshi Ito  Naoko Uehara  Han-Yong Kim  Mark Lieffering  Masumi Okada  Kazuhiko Kobayashi 《Field Crops Research》2007

Increasing global atmospheric CO₂ concentrations are expected to influence crop production. To investigate the effect on rice (Oryza sativa L.), plants were grown under ambient CO₂ (AMB) or free-air CO₂-enrichment (FACE) at CO₂ concentrations ranged from 275 to 365 μmol mol⁻¹ above AMB. We supplied ¹³CO₂ to the plants at different growth stages so we could examine the contribution of carbohydrate stored during the vegetative stage or newly fixed carbohydrate produced during the grain-filling stage to ear weight at grain maturity. In plants supplied with ¹³C at the panicle-initiation or pre-heading stages, plants grown under FACE had more starch in the stems at heading, but there was no difference in stem ¹³C content. Furthermore, there were no differences between treatments in whole-plant ¹³C contents at heading and grain maturity. In contrast, plants supplied with ¹³C at the grain-filling stage had more ¹³C in the whole plant and the ears at grain maturity under FACE than under AMB, indicating that the increased amount of photosynthate produced at the grain-filling stage under CO₂ enrichment might be effectively stored in the grains. Furthermore, regardless of when the ¹³C was supplied, plants had more ¹³C in starch in the ears at grain maturity under FACE than under AMB. Therefore, CO₂ enrichment appears to promote partitioning of photosynthate produced during both vegetative and grain-filling stages to the grains.  相似文献   

Development of a new high-throughput and small-size method for measuring sediment oxygen demand in lakes     

Shimotori  Koichi  Yamamoto  Haruki  Imai  Akio  Kohzu  Ayato  Okamoto  Takahiro 《Journal of Soils and Sediments》2021,21(2):1222-1231

Journal of Soils and Sediments - Sediment oxygen demand (SOD) measurement currently requires a long preparation time and bulky experimental equipment, which represent major obstacles to conducting...  相似文献   

Assessment of the water quality of two rivers in Hanoi City and its suitability for irrigation water     

Nguyen Thi Lan Huong  Masami Ohtsubo  Loretta Li  Takahiro Higashi  Motohei Kanayama 《Paddy and Water Environment》2008,6(3):257-262

The To Lich and Kim Nguu Rivers in Hanoi City are the main sources of irrigation water for suburban agricultural land and fish farm. Wastewater from the industrial plants located along these rivers has been discharged, and has degraded the water quality of the rivers. This study describes the chemical properties of water from the rivers, focusing on heavy metal pollution and the suitability of water quality for irrigation water. Water from the rivers was heavily polluted with organic matter and heavy metals such as Pb, Cu, Zn, Cr, Cd and Ni. Dissolved oxygen, chemical oxygen deman, and total suspended solids, and the concentrations of all heavy metals exceeded the Vietnamese standard for surface water quality in all investigated sites. The concentrations of some heavy metals such as Cu, Cd, Cr and Ni were above the internationally recommended WHO maximum level for irrigation water. A wide variation in the heavy metal concentration of water due to metal types is the result of wastewater discharged from different industrial sources.  相似文献   

Occurrence of Corynespora cassiicola isolates resistant to boscalid on cucumber in Ibaraki Prefecture, Japan     

T. Miyamoto  H. Ishii  T. Seko  S. Kobori  Y. Tomita 《Plant pathology》2009,58(6):1144-1151

A total of 651 isolates of cucumber corynespora leaf spot fungus ( Corynespora cassiicola ) collected from cucumber in Japan, either with (438 isolates) or without (213 isolates) a prior history of boscalid use, were tested for their sensitivity to boscalid by using a mycelial growth inhibition method on YBA agar medium. Additionally, seven isolates of C. cassiicola obtained from tomato, soybean, eggplant (aubergine) and cowpea in different locations in Japan were tested before boscalid registration. Minimum inhibitory concentration (MIC) and 50% effective concentration (EC₅₀) values for 220 isolates from crops without a prior history of boscalid use ranged from 0·5 to 7·5 μg mL⁻¹ and from 0·04 to 0·59 μg mL⁻¹, respectively. Two hundred and fourteen out of 438 isolates collected from ten cucumber greenhouses in Ibaraki Prefecture, Japan, which received boscalid spray applications showed boscalid resistance, with MIC values higher than 30 μg mL⁻¹. Moreover, resistant isolates were divided into two groups: a moderately resistant (MR) group consisting of 189 isolates with EC₅₀ values ranging from 1·1 to 6·3 μg mL⁻¹, and a very highly resistant (VHR) group consisting of 25 isolates with EC₅₀ values higher than 24·8 μg mL⁻¹. MR isolates were detected from all ten greenhouses, but VHR isolates were detected from only three. As a result of fungus inoculation tests which used potted cucumber plants, control failures of boscalid were observed against resistant isolates. Efficacy of boscalid was remarkably low against VHR isolates in particular. This is the first known report on boscalid resistance in Japan.  相似文献   

First report of blueberry red ringspot disease caused by <Emphasis Type="Italic">Blueberry</Emphasis><Emphasis Type="Italic">red</Emphasis><Emphasis Type="Italic">ringspot</Emphasis><Emphasis Type="Italic">virus</Emphasis> in Japan     

Masamichi Isogai  Koji Ishii  Seisaku Umemoto  Manabu Watanabe  Nobuyuki Yoshikawa 《Journal of General Plant Pathology》2009,75(2):140-143

Virus-like symptoms—red ringspots on stems and leaves, circular blotches or pale spots on fruit—were found on commercial highbush blueberry (Vaccinium corymbosum) cultivars Blueray, Weymouth, Duke and Sierra in Japan. In PCR testing, single DNA fragments were amplified from total nucleic acid samples of the diseased blueberry bushes using primers specific to Blueberry red ringspot virus (BRRV). Sequencing analysis of the amplified products revealed 95.7–97.7% nucleotide sequence identity with the BRRV genome. This paper is the first report of blueberry red ringspot disease caused by BRRV in Japan. The nucleotide sequence data reported in this paper are available in the GenBank/EMBL/DDBJ database as accessions AB469884 to AB469893 for BRRV isolates from Japan.  相似文献   

Detection of canine herpesvirus DNA in the ganglionic neurons and the lymph node lymphocytes of latently infected dogs.   总被引：2，自引：0，他引：2  

M Miyoshi  Y Ishii  M Takiguchi  A Takada  J Yasuda  A Hashimoto  K Okazaki  H Kida 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》1999,61(4):375-379

To determine the site of latent infection of canine herpesvirus (CHV), tissues from dogs convalescent from acute infection with CHV were examined for the presence of viral genome DNA by the nested polymerase chain reaction. CHV DNA was detected in the trigeminal ganglia and the retropharyngeal lymph nodes. In situ hybridization study of the tissues revealed that CHV genome persisted in the nuclei of ganglionic neurons and lymphocytes.  相似文献   

Isolation and structural characterization of rhamnogalacturonan II-borate complex fromPinus densiflora     

Tomoko Shimokawa  Tadashi Ishii  Toshiro Matsunaga 《Journal of Wood Science》1999,45(5):435-439

A boron-containing pectic polysaccharide was isolated from Driselase digests of akamatsu (Pinus densiflora) cell wall. The boron-containing polysaccharide was purified by successive column chromatography of Cosmosil C₁₈ OPN, DEAE Sepharose FF, and Superdex 75. The complex had 0.12% (w/w) boron (B) and¹¹B-NMR spectroscopy showed the complex to be the tetrahedral diester form of boron. The sugar composition and glycosyl linkage analyses showed that the sugar portion of the complex was rhamnogalacturonan-II (RG-11). The boron-attached glycosyl residue was identified to be 2-O-Me-xylose-containing apiosyl side chain in RG-II. These results established that the location of borate in the cell wall is conserved among dicots, gramineous monocots, and coniferous gymnosperm.Part of this study was presented at the 8th Cell Wall Symposium, Norwich, September 3, 1998  相似文献