Direct and indirect effects of tree diversity drive soil microbial diversity in temperate deciduous forest     

Carolin Thoms  Mascha Jacob  Gerd Gleixner 《Soil biology & biochemistry》2010,42(9):1558-1565

We investigated the link between aboveground and belowground diversity in temperate deciduous forest ecosystems. To this end, we determined the effects of the tree species composition on the biomass and composition of the soil microbial community using phospholipid fatty acid (PLFA) profiles in the Hainich National Park, a deciduous mixed forest on loess over limestone in Central-Germany. We investigated the effects of the leaf litter composition on the microbial community, hypothesizing that distinctive leaf litter compositions increase signature PLFAs. In addition, we studied the impact of clay content, pH and nutrient status of the soil on the microbial community in different surface soil layers. Consequently, soil was sampled from depths of 0-5 cm, 5-10 cm and 10-20 cm. Plots with highest leaf litter diversity had the largest total amounts of fatty acids, but only PLFA 16:1ω5, which is a common marker for arbuscular mycorrhizal fungi, was significantly increased. In the uppermost soil layer, the pH explained most of the variance in microbial composition. In the deeper surface soil layers, nutrients such as carbon, nitrogen and phosphorus determined the microbial abundances and composition. Our results suggest that the soil microbial community is mainly indirectly influenced by aboveground diversity. Changes in soil pH or the soil nutrient status that are driven by specific plant traits like leave litter quality drive these indirect changes. Specific direct interactions are most reasonable for mycorrhizal fungi.  相似文献   

Response of soil microbial communities and the production of plant-available nitrogen to a two-year rainfall manipulation in the New Jersey Pinelands     

William J. Landesman  John Dighton 《Soil biology & biochemistry》2010,42(10):1751-91

Projected changes in precipitation patterns in the northeastern U.S. may alter soil moisture dynamics and cause a shift in the structure and function of soil microbial communities. We studied the potential for such changes by manipulating annual precipitation amount in an oak-pine forest of the New Jersey Pinelands. During a two-year field study we tested the effects of a complete rain exclusion, as well as a doubling of rainfall, on soil microbial biomass, community composition (phospholipid fatty acid analysis) and the production of plant-available nitrogen (nitrogen mineralization + amino-acid production). We found that neither microbial biomass nor community composition was affected by the experimental manipulations. Despite having studied the organic horizon, the relatively high sand content appeared to influence this response by limiting the extent to which soil moisture increased in response to elevated rainfall. Furthermore, a strong correlation between soil moisture and the physiological status of Gram-negative bacteria suggested that soil microbes in the New Jersey Pinelands are well adapted to soil drying. We observed a sustained accumulation of ammonium in drought plots that was more than four times the value of all other treatments after one year. The relationship between soil moisture and nitrogen mineralization changed with season, suggesting that the effect of changing rainfall patterns on nitrogen cycling will depend upon microbial physiological demand and substrate diffusion. Based on available estimates of foliar N concentration in the New Jersey Pinelands, we conclude that neither the accumulation of ammonium in drought plots, nor the changes in nitrogen mineralization rates in response to high and low soil moisture will affect plant nitrogen demand. However, if the ammonium pool in dry soil had been mobilized by precipitation, a shift towards a higher bacteria:fungi ratio - and therefore higher nitrogen mineralization rates - may have occurred.  相似文献   

Development of soil microbial communities during tallgrass prairie restoration     

Kamlesh Jangid  Mark A. Williams  John M. Blair  William B. Whitman 《Soil biology & biochemistry》2010,42(2):302-312

Soil microbial communities were examined in a chronosequence of four different land-use treatments at the Konza Prairie Biological Station, Kansas. The time series comprised a conventionally tilled cropland (CTC) developed on former prairie soils, two restored grasslands that were initiated on former agricultural soils in 1998 (RG₉₈) and 1978 (RG₇₈), and an annually burned native tallgrass prairie (BNP), all on similar soil types. In addition, an unburned native tallgrass prairie (UNP) and another grassland restored in 2000 (RG₀₀) on a different soil type were studied to examine the effect of long-term fire exclusion vs. annual burning in native prairie and the influence of soil type on soil microbial communities in restored grasslands. Both 16S rRNA gene clone libraries and phospholipid fatty acid analyses indicated that the structure and composition of bacterial communities in the CTC soil were significantly different from those in prairie soils. Within the time series, soil physicochemical characteristics changed monotonically. However, changes in the microbial communities were not monotonic, and a transitional bacterial community formed during restoration that differed from communities in either the highly disturbed cropland or the undisturbed original prairie. The microbial communities of RG₉₈ and RG₀₀ grasslands were also significantly different even though they were restored at approximately the same time and were managed similarly; a result attributable to the differences in soil type and associated soil chemistry such as pH and Ca. Burning and seasonal effects on soil microbial communities were small. Similarly, changing plot size from 300 m² to 150 m² in area caused small differences in the estimates of microbial community structure. In conclusion, microbial community structure and biochemical properties of soil from the tallgrass prairie were strongly impacted by cultivation, and the microbial community was not fully restored even after 30 years.  相似文献   

Factors affecting soil microbial community structure in tomato cropping systems     

Jeffrey S. Buyer  John R. Teasdale  Inga A. Zasada  Jude E. Maul 《Soil biology & biochemistry》2010,42(5):831-841

Soil and rhizosphere microbial communities in agroecosystems may be affected by soil, climate, plant species, and management. The management and environmental factors controlling microbial biomass and community structure were identified in a three-year field experiment. The experiment consisted of a tomato production agroecosystem with the following nine treatments: bare soil, black polyethylene mulch, white polyethylene mulch, vetch cover crop, vetch roots only, vetch shoots only, rye cover crop, rye roots only, and rye shoots only. The following hypotheses were tested: (1) Temperature and moisture differences between polyethylene-covered and cover-cropped treatments are partly responsible for treatment effects on soil microbial community composition, and (2) Different species of cover crops have unique root and shoot effects on soil microbial community composition. Microbial biomass and community composition were measured by phospholipid fatty acid analysis. Microbial biomass was increased by all cover crop treatments, including root only and shoot only. Cover cropping increased the absolute amount of all microbial groups, but Gram-positive bacteria decreased in proportion under cover crops. We attribute this decrease to increased readily available carbon under cover-cropped treatments, which favored other groups over Gram-positive bacteria. Higher soil temperatures under certain treatments also increased the proportion of Gram-positive bacteria. Vetch shoots increased the amount and proportion of Gram-negative bacteria, fungi, and arbuscular mycorrhizal fungi in the rhizosphere of tomato plants. The imposed treatments were much more significant than soil temperature, moisture, pH, and texture in controlling microbial biomass and community structure.  相似文献   

The microbial PLFA composition as affected by pH in an arable soil     

Johannes Rousk  Philip C. Brookes 《Soil biology & biochemistry》2010,42(3):516-23

The influence of soil pH on the phospholipid fatty acid (PLFA) composition of the microbial community was investigated along the Hoosfield acid strip, Rothamsted Research, UK - a uniform pH gradient between pH 8.3 and 4.5. The influence of soil pH on the total concentration of PLFAs was not significant, while biomass estimated using substrate induced respiration decreased by about 25%. However, the PLFA composition clearly changed along the soil pH gradient. About 40% of the variation in PLFA composition along the gradient was explained by a first principal component, and the sample scores were highly correlated to pH (R² = 0.97). Many PLFAs responded to pH similarly in the Hoosfield arable soil compared with previous assessments in forest soils, including, e.g. monounsaturated PLFAs 16:1ω5, 16:1ω7c and 18:1ω7, which increased in relative concentrations with pH, and i16:0 and cy19:0, both of which decreased with pH. Some PLFAs responded differently to pH between the soil types, e.g. br18:0. We conclude that soil pH has a profound influence on the microbial PLFA composition, which must be considered in all applications of this method to detect changes in the microbial community.  相似文献   

Does the depletion of pentachlorophenol in root–soil interface follow a simple linear dependence on the distance to root surfaces?     

Yan He  Jianming Xu  Xiaofei Lv  Zhaohui Ma  Jianjun Wu  Jiachun Shi   《Soil biology & biochemistry》2009,41(9):1807-1813

To understand root–soil–microbe interactions in rhizo-depletion of xenobiotics, we conducted a glasshouse study using specially designed laminar rhizoboxes which allow intact layers of near- (1–5 mm) and far- (>5 mm) rhizosphere soil to be harvested separately from root surfaces without the removal of the root material itself. Plant (Lolium perenne L.) seedlings were grown for 90 days in a soil treated with PCP at 20 and 50 mg kg⁻¹. Changes in PCP depletion, soil microbial biomass and community structure (as indicated by phospholipid fatty acids (PLFAs) profiles) with increasing distance from the root surfaces were then assessed after harvesting. Surprisingly, depletion of PCP in the planted rhizoboxes exhibited a nonlinear dependence on the distance to root surfaces, with the most rapid loss in the 2 or 3 mm near-rhizosphere layers, contrasting to the well-known linear gradient of root exudates and mineral nutrients etc. (generally, the extent gradually decreased with increasing distance from the root surface). Soil microbial biomass carbon, however, decreased linearly as expected with increasing distance from the roots. The microbial community structures as indicated by PLFA profiles showed distance-dependent selective enrichment of competent species that may be responsible for efficient PCP depletion. The results suggest that root exudates induced modifications of microbial communities in the PCP contaminated rhizosphere and spatially modified the dominant species within these communities, resulting in the nonlinear PCP depletion pattern.  相似文献   

长期不同施肥条件下红壤性水稻土微生物群落结构的变化   总被引：10，自引：2，他引：10  

夏昕  石坤  黄欠如  李大明  刘满强  李辉信  胡锋  焦加国 《土壤学报》2015,52(3):697-705

以位于江西省红壤研究所内长期定位试验的水稻土(始于1981年)为研究对象,运用磷脂脂肪酸(phospholipid fatty acid,PLFA)和BIOLOG分析技术研究了不施肥(CK)、单施化肥(NPK)及有机肥与化肥混施(NPKM)三种施肥方式对土壤微生物群落结构的影响。结果表明:长期施化肥和有机肥与化肥混施处理的PLFA总量均高于未施肥处理,两者分别较未施肥处理高91%和309%;PLFA主成分分析(PCA)显示施肥促进了土壤微生物群落结构的变化,其中NPKM处理增加了革兰氏阴性细菌(G-细菌)、真菌、放线菌和原生动物的数量,NPK处理增加了革兰氏阳性细菌(G+细菌)的数量,不施肥处理较施肥处理提高了真菌/细菌比例,CK和NPK处理的微生物群落结构更为相似;各施肥处理间土壤的AWCD值(平均每孔颜色变化率,average well color development,AWCD)表明,NPKM处理能够促进土壤微生物群落对碳源的利用能力,进而增加土壤中微生物的整体活性,而NPK处理减弱了土壤微生物的活性。代谢功能多样性分析同时表明,NPKM处理增加了微生物群落的多样性,而NPK处理使土壤微生物的多样性降低;土壤PLFA与土壤养分的相关性分析显示,土壤总PLFA量与土壤有机质和全氮呈极显著相关(p0.01),与速效养分相关性不大。  相似文献   

水分条件对水稻土微生物群落多样性及活性的影响   总被引：10，自引：0，他引：10  

刘岳燕  姚槐应  黄昌勇 《土壤学报》2006,43(5):828-834

采用BIOLOG碳素利用法、磷脂脂肪酸（PLFA）法和土壤酶活性测定等方法比较了三种水分条件（淹育、淹育晾干、非淹育）对水稻土微生物群落多样性及活性的影响。结果表明，淹育处理水稻土的脱氢酶、蔗糖酶活性明显高于淹育晾干和非淹育处理，并导致该土壤的基础呼吸升高。BIOLOG碳素利用法表明，非淹育处理的微生物群落平均吸光值（AWCD）显著低于淹育和淹育晾干处理。磷脂脂肪酸（PLFA）实验发现，淹育水稻土的真菌特征脂肪酸（18：2w6，9c）所占比例减少，真菌特征脂肪酸（18：2w6，9c）与细菌特征脂肪酸（15：0i＋15：0a＋16：0i＋16：1w5c＋17：0i＋17：0a＋17：0cy＋17：0＋18：1w7c＋19：0cy）的比值下降；水分条件变化没有改变土壤微生物环丙基脂肪酸19：0cy的相对丰度，但非淹育处理的环丙基脂肪酸17：0cy相对丰度明显高于另外二种处理。BIOLOG碳素利用法的群落水平生理剖面（CLPP）和磷脂脂肪酸（PLFA）测定结果经聚类分析后，发现淹育和淹育晾干处理的土壤微生物多样性在较低的距离尺度可聚成一类，且与非淹育土壤具有明显差异。淹育水稻土与淹育晾干相比，尽管土壤微生物群落结构和功能多样性有一定的相似性，但微生物的种群组成和活性仍发生了较大的变化。  相似文献   

Comparison of phospholipid fatty acid (PLFA) and total soil fatty acid methyl esters (TSFAME) for characterizing soil microbial communities     

Rebecca E. Drenovsky  Geoff N. Elliott  Kate M. Scow 《Soil biology & biochemistry》2004,36(11):1793-1800

Phospholipid fatty acid (PLFA) and total soil fatty acid methyl esters (TSFAME), both lipid-based approaches used to characterize microbial communities, were compared with respect to their reliable detection limits, extraction precision, and ability to differentiate agricultural soils. Two sets of soil samples, representing seven crop types from California's Central Valley, were extracted using PLFA and TSFAME procedures. PLFA analysis required 10 times more soil than TSFAME analysis to obtain a reliable microbial community fingerprint and total fatty acid content measurement. Although less soil initially was extracted with TSFAME, total fatty acid (FA) content g⁻¹ soil (DW) was more than 7-fold higher in TSFAME- versus PLFA-extracted samples. Sample extraction precision was much lower with TSFAME analysis than PLFA analysis, with the coefficient of variation between replicates being as much as 4-fold higher with TSFAME extraction. There were significant differences between PLFA- and TSFAME-extracted samples when biomarker pool sizes (mol% values) for bacteria, actinomycetes, and fungi were compared. Correspondence analysis (CA) of PLFA and TSFAME samples indicated that extraction method had the greatest influence on sample FA composition. Soil type also influenced FA composition, with samples grouping by soil type with both extraction methods. However, separate CAs of PLFA- and TSFAME extracted samples depicted strong differences in underlying sample groupings. Recommendations for the selection of extraction method are presented and discussed.  相似文献   

Forest floor microbial communities in relation to stand composition and timber harvesting in northern Alberta     

K.D. Hannam  S.A. Quideau 《Soil biology & biochemistry》2006,38(9):2565-2575

With the growing interest in silvicultural techniques that more closely emulate natural disturbance regimes, there is a need to better understand how partial harvesting affects the soil microbial community in stands with varying ecological characteristics, e.g., tree species composition. Four and a half and 5.5 years post-harvest, we used phospholipid fatty acid (PLFA) and substrate-induced respiration (SIR) analyses to compare the microbial biomass and microbial community structure of forest floors from stands dominated by white spruce (Picea glauca; SPRUCE) or by trembling aspen (Populus tremuloides; ASPEN) and from mixed-species (MIXED) stands in northern Alberta, Canada, that had been clearcut, partial-cut with 20% retention, partial-cut with 50% retention or left uncut (controls). PLFA and SIR analyses revealed that ASPEN forest floors supported a larger microbial biomass with a very different community structure than MIXED or SPRUCE forest floors. The microbial community structure of these soils appeared to be strongly affected by the presence of white spruce and the composition of the understory vegetation. There were no effects of timber harvesting detected within or across stand types on any of the variables measured, with the exception of the PLFA 16:1ω5, which was relatively more abundant in the clearcuts and 50% retention treatments than in the uncut controls, perhaps in response to an increased forest floor pH and grass cover in the disturbed areas. The resilience to timber harvesting of the forest floors from these stands may be the result of efforts to minimize soil disturbance during harvesting and to allow vegetation to regenerate naturally. From the perspective of the forest floor microbial community, partial harvesting does not appear to have any benefit over clearcut harvesting at these boreal forest sites.  相似文献