胡萝卜根中主要类胡萝卜素含量相关QTL的精细定位     

欧承刚  孙婷婷  刘新艳  李成江  徐东辉  赵志伟  庄飞云 《园艺学报》2017,44(2):288-296

以白色的野生胡萝卜‘松滋野生’(Ws)和橘色的栽培胡萝卜品种‘Amsterdam’(Af)为亲本构建的回交重组自交系(BIL)为试材,基于低倍重测序技术开发SNP标记,构建了由1 976个Bin标记组成,包含29 435个SNP标记的遗传图谱。图谱总距离834.28 c M,平均图距0.42 c M。通过对胡萝卜肉质根中类胡萝卜素含量相关QTL分析,在连锁群LG04和LG08中检测到调控α–胡萝卜素、β–胡萝卜素、ζ–胡萝卜素、叶黄素、玉米黄质和总类胡萝卜素含量的主效QTL(M-QTL)2、2、3、2、2和2个,表型贡献率为11.47%~19.18%;另检测到调控α–胡萝卜素、β–胡萝卜素、ζ–胡萝卜素、玉米黄质和总类胡萝卜素含量的上位性QTL(E-QTL)1、1、2、1和1个,表型贡献率为2.50%~3.66%。在M-QTL显著区间内共检索到36个有功能注释的预测基因,其中Dck018297为ζ–胡萝卜素脱氢酶2基因,与调控β–胡萝卜素合成和总类胡萝卜素含量有关;Dck008006为乙烯响应因子2.2的同源基因,与调控α–胡萝卜素、ζ–胡萝卜素合成有关;Dck029898为转录因子b HLH135的同源基因,与调控玉米黄质合成有关。  相似文献   

Analysis on Genetic Diversity and Phyletic Evolution of mtDNA Cytb Gene in Zhongdian Yak     

TU Shi-ying  SONG Na-na  CHAI Zhi-xin  ZHONG Jin-cheng 《中国畜牧兽医》2016,43(10):2680-2687

In order to investigate the genetic diversity and the origin of evolutionary relationship of Zhongdian yak,we analyzed the complete sequence of 15 individuals Cytb gene,its sequence polymorphism was analyzed,and the phylogenetic tree was constructed.The results showed that the length of the nucleotide sequence were 1 140 bp,with nucleotide frequencies of 26.3%,31.8%,13.1% and 28.8% for T,A,G and C,respectively.Three haplotypes were identified of 15 individuals,with 3 polymorphic sites,including two conversions,one transversion,haplotype diversity was 0.2571 and nucleotide diversity was 0.00035.Phylogenetic analysis suggested that Zhongdian yak and Bos mutusc clustered firstly,then gathered with Bison bison,which indicated that there were high genetic similarity and closer genetic relationship,genetic similarity with other cattle genus was relatively low.Combining with the proof of molecular biology and paleontology,the result supported the point that Bos grunniens and Bos mutus were classified as an alone genus in Bovinae.  相似文献   

2017-2018年吉林部分地区规模化猪场猪细环病毒的遗传变异分析     

刘东旭  李国江  苗丽娟  沙万里  魏佳晋  尹柏双 《中国兽药杂志》2019,53(7):8-17

为了解猪细环病毒（Torque teno sus virus, TTSuVs）在吉林部分规模化猪场的流行及其遗传变异情况。本研究对2017-2018年间，来自吉林地区10家规模化猪场的574份血清样本进行TTSuVs流行情况调查。并根据收地点，对20株TTSuVs进行ORF1全基因序列扩增及遗传变异性分析。结果显示：TTSuV1感染率为35.0%；TTSuV2感染率为63.2%；TTSuV1与TTSuV2混合感染率为30.3％；10株TTSuV1测序株之间的核苷酸同源性为75.7%-94.7%，氨基酸同源性为48.1%-88.2%；10株TTSuV2测序株之间的核苷酸同源性为77.5%-93.7%，氨基酸同源性为70.6%-87.4%；且吉林地区流行的TTSuV1均属于TTSuV1-lb型，而TTSuV2流行情况较为复杂，各种亚型均有涉及。  相似文献   

Over 40% of 450 registered wheat cultivars (Triticum aestivum) worldwide are composed of multiple biotypes     

《Journal of Cereal Science》2020

Many of 450 common wheat cultivars bred and registered during the twentieth century in 12 countries were proved, due to seed-by-seed analysis, to be composed of two or more biotypes differing in their alleles at the gliadin (Gli) loci. These multiple biotypes may be regarded as authentic progeny of the respective parent lines, as evidenced by the gliadin composition of the respective parents. Therefore, the official claim for each cultivar to be uniform is commonly not maintained in practice. The most frequent was a non-uniform cultivar composed of two biotypes differing at one Gli locus, but there were cultivars represented by a large set of related genotypes differing at several Gli loci. The proportion of the multi-biotype cultivars was never less than 15% for a country collection, exceeding 50% in other countries. This proportion differed significantly between neighbouring countries. In Australia, all multi-biotype cultivars were found in eastern states; in the state of Victoria, their frequency was statistically higher than in the rest of the country. The proportion of multi-biotype cultivars among newly-released cultivars decreased with time in Australia and the UK. Thus, the non-uniformity of registered cultivars represents a general and important phenomenon of common wheat as a crop.  相似文献   

水稻小粒密穗突变体sep1的遗传分析、基因定位与育种利用     

王跃星  吴昆  方云霞  陈红旗  倪深  付向东  朱旭东 《中国水稻科学》2014,28(3):229-234

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Distances Walked by Long Established and Newcomer Horses in an Open Stable System in Northern Germany     

《Journal of Equine Veterinary Science》2020

Group housing is claimed to possibly provide horses with a species-appropriate movement possibility, and hence, better welfare. Thus, this study analyzed the daily walked distances of 51 horses held in one group in a “HIT Active Stable” (Hinrichs Innovation + Technik) in Northern Germany by using global positioning system (GPS) technology during a 7 ½-month time span. The daily walking distances of the whole group, as well as newcomers, were investigated. The horses traveled an average of 8.43 km/day. Linear mixed models were applied. The observation day had a significant effect on the daily walking distances (P < .01) due to season and the available area per horse. The age as covariate also had a significant effect (P < .01). The breed had no significant effect (P = .96). No significant differences were found in sex (P = .69), which can be explained by the fact that only mares and geldings were investigated, which do not show increasing locomotion caused by sexual behavior as stallions do. On six of the first nine days, new horses moved significantly more compared to the remaining 24 of the 30 observation days directly after individuals’ inclusion. This is probably due to more exploration and rank-fighting behavior. Similar walking distances were seen among the horses on the single observation days because all horses had to travel the same distance to reach resources. Further, it is suspected that not all horses can sufficiently live out their urges to move, especially in winter, when pasture is inaccessible.  相似文献   

Inheritance and QTL Mapping for α-Tocopherol in Soybean   总被引：1，自引：1，他引：0  

LIANG HuiZhen  YU YongLiang  XU LanJie  YANG HongQi  DONG Wei  TAN ZhengWei  LI Lei  PEI XinYong  LIU XinMei 《中国农业科学》2019,52(1):11-20

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Genetic analysis and QTL mapping of growth period traits and plant height traits in soybean recombinant inbred lines from Dongnong 47 × PI 317334-B     

《中国油料作物学报(英文)》2021,6(2):66-73

High and stable yield is the main goal of soybean genetic improvement. In this study, association analysis was used to detect the quantitative trait loci (QTL) for the plant height, and soybean growth period using 182 SSR markers in the RIL population of 136 F_4:8 lines, which developed from a cross between photoperiod-insensitive cultivar ‘Dongnong 47’ and photoperiod-sensitive variety PI317334–B. The results showed that 33 QTLs related to soybean growth period and plant height traits were detected by compound interval mapping, and were located on 12 linkage groups including N, C1, C2, J, D1a, B2, E, G, A2, O, L, I, with the contribution rate of 7.85–33.84%. These QTL loci and linkage markers related to soybean photoperiod sensitivity, would be helpful to identify key genes that control soybean photoperiod sensitivity, and provide an important basis for the breeding of new photoperiod-insensitive soybean varieties based on molecular design breeding.  相似文献   

Segment-based coancestry,additive relationship and genetic variance within and between the Norwegian and the Swedish Fjord horse populations     

Hanne Fjerdingby Olsen  Saija Tenhunen  Nils Ivar Dolvik  Dag Inge Våge  Gunnar Klemetsdal 《Acta Agriculturae Scandinavica, Section A - Animal Sciences》2020,69(1-2):118-126

ABSTRACT

The Fjord horse originates from Norway but forms a global population due to several small populations in foreign countries. There exists no information about the additive relationship and the genetic variance between these subpopulations. By collecting blood samples from Norwegian and Swedish Fjord horses, a sample of 311 Norwegian and 102 Swedish horses gave 485,918 SNPs available for analysis. Their inbreeding coefficients were calculated and compared to the pairwise coancestry and the shared genomic segments. The effective population size was almost similar with the two methods in the Norwegian Fjord horse population (63 and 71), but very different in the Swedish population (269 and 1136) and unprecise due to a much smaller number of observations. The study showed that coancestry from shared genomic segments can be used to estimate additive genetic relationship and genetic variation within and between the global populations of the Fjord horse.  相似文献   

基于nSSR和cpDNA序列的城步峒茶群体遗传多样性和结构研究     

刘振  成杨  杨培迪  赵洋  宁静  杨阳 《茶叶科学》2020,40(2):250-258

采用简单重复序列标记(nSSR)与叶绿体DNA序列(cpDNA)分析技术,对城步峒茶群体进行了遗传多样性、遗传结构和遗传分化等研究。结果表明,15对nSSR引物在参试81份资源中共获得142个等位位点,平均每对引物9.47个,城步峒茶群体的观测杂合度(Ho)、期望杂合度(He)和Nei期望杂合度(Nei)分别为0.49、0.62和0.62,具有较高的遗传多样性。Structure分析将79份峒茶资源分成3个类群,但各类群的遗传背景较为复杂,没有明显的群体结构。F检验表明,城步峒茶群体的近交系数F_IS为正值(F_IS=0.177 5),群体间的遗传分化系数F_ST较小(F_ST=0.034 5),分化程度较低,基因流Nm较高(Nm=7.01)。3对cpDNA引物分别获得了473 bp(rbcL)、704 bp(matK)和320 bp(psbH-trnA)的片段序列,变异位点占总位点的比例分别为0.42%、0.71%和1.25%。将3个序列依次拼接,共产生了9个单倍型,单倍型数由多到少的居群依次为TXZ(6)、DZC(4)、DPS(4)、TYS(3)、HJZ(2),群体的单倍型多样性(Hd)和核苷酸多样性(π)分别为0.732和0.001 39。9个单倍型中,单倍型H1和H5处于进化网络图的中心节点上,并且包含资源数量最多,属于比较原始的单倍型。同时,nSSR和cpDNA的AMOVA分析结果基本一致,居群内的变异百分比分别达到96.69%和80.54%,城步峒茶的遗传变异主要存在于居群内。  相似文献