Application of bovine microsatellite markers for genetic diversity analysis of European bison (Bison bonasus)     

T. Roth  I. Pfeiffer  K. Weising  & B. Brenig 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2006,123(6):406-409

In this study, the cross‐amplification of a commercial multiplex set of 11 cattle (Bos taurus) microsatellites was tested on a panel of 35 European bison (Bison bonasus) individuals. After polymerase chain reaction optimization, all loci cross‐amplified successfully in investigated bisons. Number of alleles and observed and expected heterozygosity per locus are in the range of 2–4, 0.086–0.629 and 0.288–0.621 respectively. The availability of a heterologous set of multiplexed microsatellite markers derived from cattle opens an avenue for collecting profound genetic data for efficient conservation management strategies of the European bison.  相似文献   

Parentage testing of Thoroughbred horse in Korea using microsatellite DNA typing     

Sun-young Lee  Gil-jae Cho 《Journal of veterinary science (Suw?n-si, Korea)》2006,7(1):63-67

The present study was to construct a parentage testing system for Thoroughbred (TB) horse. A total number of 1,285 TB horse samples including 962 foals for parentage testing, 9 sires and 314 dams for individual identification were genotyped. Genomic DNA was extracted from 5 hair roots and genotyped by using 14 microsatellite markers (AHT4, AHT5, ASB2, ASB17, ASB23, CA425, HMS1, HMS3, HMS6, HMS7, HTG4, HTG10, LEX3 and VHL20). This method consisted of multiplexing PCR procedure and showed reasonable amplification of all PCR products. Genotypes were determined by genetic analyzer. The number of alleles per locus varied from 3 to 9 with a mean value of 6.36 in TB horse. The expected heterozygosity was ranged from 0.548 to 0.831 (mean 0.699), and the total exclusion probability of 14 microstellite loci was 0.9998. Of the 14 markers, ASB2, ASB17, ASB23, HMS7 and HTG10 loci have relatively high PIC value (> 0.7). Of the 962 foals, 960 foals were qualified by compatibility according to the Mendelism. These results suggest that the DNA typing method has high potential for parentage verification and individual identification of TB horses.  相似文献   

绿头野鸭与我国主要地方鸭品种遗传多样性研究   总被引：5，自引：0，他引：5  

苏瑛  陈国宏  龙瑞军  万江虹  马龙 《畜牧兽医学报》2007,38(9):899-906

利用17个微卫星标记,采用PCR扩增,8%非变性聚丙烯酰胺凝胶电泳、银染,对绿头野鸭种群和我国9个主要地方鸭品种的遗传多样性进行了检测,统计了各群体的平均有效等位基因(Ne)、平均遗传杂合度(H)、多态信息含量(PIC)、群体间的遗传距离(Ds)和相似系数(I)。采用UPGMA和NJ法构建系统发生树。结果表明:17个微卫星座位在绿头野鸭种群和我国9个主要地方鸭品种中的多态信息含量均为高度多态,所有鸭种的平均PIC、H、Ne分别为0.6506、0.6896、4.1±1.5,基因多态性和遗传多样性相对较高;家鸭各品种间的遗传距离在0.1631~0.6844范围内,绿头野鸭与家鸭品种间的遗传距离分别在0.3096~0.8219之间。根据系统发育树推断中国主要地方鸭品种不是单一起源于绿头野鸭。中国主要地方鸭品种大致可以分为5支。一支为北京鸭、荆江鸭,一支为中山鸭、建昌鸭及高邮鸭,一支为靖西大麻鸭和金定鸭,连城鸭为一支,绍兴鸭为另一支。  相似文献   

黄羽肉鸡微卫星多态性与料肉比的相关分析     

王曦  李红霞  朱庆 《中国家禽》2007,29(11):22-24

从鸡的遗传图谱中选取13个微卫星基因座,对黄羽肉鸡A系和B系(粤黄鸡102系)回交F1代群体100个个体进行标记与料肉比的最小二乘分析,结果表明:ADL0252、LEI0071、MCW0004、MCW0245、MCW0341这5个基因座与料肉比之间存在着极显著的关系(P<0.01),而基因座MCW0223、MCW0264与料肉比之间存在着显著的关系(P<0.05)。基因座MCW0004的DD型、ADL0252的CC型和MCW0223的AA型所对应的最小二乘均值最大,其有望作为对料肉比性状进行选择的辅助标记。  相似文献   

Using FTA® Elute MicroCards to address biosecurity and DNA quality issues in abalone aquaculture     

Natasha A Carr  Sharon A Appleyard 《Aquaculture Research》2008,39(16):1799-1802

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微卫星标记在RR-B系剑尾鱼遗传监测中的应用   总被引：2，自引：0，他引：2  

刘宇飞  白俊杰  李凯彬 《水产学报》2007,31(3):280-286

采用49对微卫星引物对RR-B系剑尾鱼和红眼红体的非选育系剑尾鱼进行PCR扩增，有46个微卫星座位能获得稳定的扩增产物，7个微卫星座位能区分RR-B系与非选育群体剑尾鱼。7个微卫星座位在选育系剑尾鱼为单态纯合，而在非选育群体具有多态性，座位Msa014鉴定RRB系剑尾鱼排除概率最高，为98.75%，座位Msd003排除概率最低达到了87.50%，其余5个座位排除概率介于两者之间。为方便今后的遗传监测，对RR-B系剑尾鱼样品的7个微卫星座位进行了测序，确定了其大小和具体的微卫星结构。本实验建立了RR-B系剑尾鱼分子检测方法，为实验动物剑尾鱼的遗传监测奠定了基础。图4表3参23  相似文献   

雷州山羊和隆林山羊遗传多样性的微卫星分析     

王东劲  侯冠彧  王文强  管松  荣光  马月辉 《勤云标准版测试》2007,(12)

为了调查中国热带、亚热带主要山羊品种的遗传资源现状,应用14对微卫星引物,检测了隆林山羊和雷州山羊不同分布地区的群体遗传多样性水平。隆林山羊(柳州)、隆林山羊(百棚)、雷州山羊(徐闻)、雷州山羊(海南)各群体平均多态信息含量(PIC)分别为0.645、0.600、0.483、0.518;平均杂合度(H)分别为0.281、0.421、0.121、0.157;平均等位基因数(k)分别为5.17、4.93、4.64、4.5,3组数据综合说明两个山羊品种遗传多样性相对匮乏,群体遗传变异较低;NJ法聚类显示,隆林山羊两个群体聚为一类,再与雷州山羊(徐闻)聚在一起,最后为雷州山羊(海南),这与两个品种的来源及地理分布基本一致。研究结果为中国热带、亚热带山羊品种资源开发利用提供了基础资料和科学数据。  相似文献   

牙鲆5个养殖群体的遗传多样性分析   总被引：7，自引：2，他引：5  

刘海金  朱晓琛  孙效文  杨立更  薛玲玲  毛连菊 《中国水产科学》2008,15(1):30-37

利用16对微卫星分子标记对牙鲆（Paralichthys olivaceus）的5个养殖群体进行遗传多样性分析。结果表明，等位基因数为2-9个，平均等位基因数为6．0625；有效等位基因数1．2596-5．5161，平均有效等位基因数3．692；各位点的杂合度观测值（Ho）0．2200-0．8000；杂合度期望值（He）0．2061-0．8187。各群体之间无偏倚杂合度期望值从小到大依次为丹东、北戴河、威海、青岛、荣成。Kruskal-Wallis检验结果（H=0．672，df=4，P=0．955）则说明，5个群体遗传多样性差异不显著。群体间基因分化系数（Gs，）为0．0991，各群体之间存在中度遗传分化。采用UPGMA法对5个群体进行聚类，可分3类：丹东和北戴河各为一类，威海、荣成、青岛为一类，其中威海与荣成群体的分化最小。结合Hardy-Weinberg平衡，拟合度检验和遗传偏离指数（动的分析结果表明，各群体的遗传平衡状况存在很大差别。遗传变异的分析结果说明5群体遗传多样性比较丰富。  相似文献   

Genetic structure of the migratory catfish Pseudoplatystoma corruscans (Siluriformes: Pimelodidae) suggests homing behaviour     

L. H. G. Pereira  F. Foresti  C. Oliveira 《Ecology of Freshwater Fish》2009,18(2):215-225

Abstract –  Pseudoplatystoma corruscans is distributed widely in the La Plata Basin in Brazil, where it is a very important species because of its high commercial value and ecological role as a voracious predator. This species undertakes long migrations during the dry and rainy seasons to feed and reproduce, respectively. In this study, we analysed seven microsatellite loci to test the hypotheses of the existence of a single panmictic population of P. corruscans in the La Plata Basin. All microsatellites analysed were highly polymorphic with the number of alleles per locus ranging from seven (Pcor28) to 30 (Pcor10). Across all samples, 107 alleles were detected. Thirty alleles were private, i.e., found in only one sample. Highly significant genetic differentiation was observed among samples in three of the four analyses performed: F _ST (from 0.03435 to 0.16349, P  < 0.05), Analysis of molecular variance (amova) F _ST = 8.25% ( P  < 0.0001) and amova R _ST = 9.72% ( P  < 0.0001). A microsatellite multilocus Bayesian assignment test with the programme structure confirmed the division of the fishes into six groups largely concurrent with main branches on a population neighbour-joining tree. The obtained results rejected the panmixia hypothesis. On the other hand, the documented long-distance movements of P. corruscans and the geographical scale of genetic differentiation found in this study indicate a strong tendency for fish of this species to utilise their natal nursery regions for reproduction, which represents the first demonstrated example of homing in a freshwater catfish in South America.  相似文献   

广灵驴分子系谱的建立及群体遗传结构分析     

牛晓艳  曹亮  明世清  李燕平  詹海杰  姜志广  卫顺生  张元庆 《畜牧兽医学报》2022,53(2):391-401

旨在对广灵县优种驴场保种群体进行调查的基础上构建分子系谱,并对其种群的遗传结构进行分析。本研究采集保种群成年、体况良好的广灵驴（体重350~400 kg）颈静脉血10 mL（n=107）,其中公驴13份,母驴94份,抗凝处理后提取全血DNA。采用12个微卫星标记进行荧光PCR扩增后,用ABI3730测序仪进行分型。分型结果采用Cervus 2.0和Pedigraph 2.4软件构建分子系谱,同时采用STRUCTURE2.3和Fstat软件计算群体遗传参数,采用R语言的hclust函数绘制7头公驴及其后代的系统发生NJ树（邻接树）。结果,对107头种驴进行了分子系谱构建,找到了30头子代的父亲和7头子代的母亲,系谱可靠性>90%;微卫星标记的平均观测杂合度（H_Obs）和多态信息含量（PIC）分别为0.676 5和0.593 9,标记遗传多样性较高;NJ树对7个公驴家系进行了聚类;群体分化系数（F_ST）为0.184,群体平均近交系数（F_IT）为0.033,群体内近交系数（F_IS）为-0.238,且群体处于哈代-温伯格平衡状态,存在很弱的近交。本研究建立了广灵驴保种群可靠性较高的分子系谱并对其遗传结构进行了分析,证明该群体遗传多态性较高,群体近交系数较低,处于较好的保种状态,具有较大的品种资源开发潜力。  相似文献