Interspecific relationships of Lycoris (Amaryllidaceae) inferred from inter-simple sequence repeat data     

Shude Shi  Yingxiong Qiu  Ling Wu  Chengxin Fu 《Scientia Horticulturae》2006

Inter-simple sequence repeat (ISSR) markers were used to evaluate interspecific relationships of Lycoris. Twenty-four samples were included in the study representing a total of 20 among species and varieties. Thirteen primers produced 228 discernible DNA fragments, 205, or 89.91%, of which were polymorphic, indicating a high level of interspecific genetic variation in Lycoris. Our UPGMA cluster analysis recognized four major groups of species, which were consistent with morphological and karyotype observations. The first group included species with telocentric and metacentric chromosomes, while the second consisted of species with a haploid genome of 11 subtelocentric chromosomes. The third group contained species with a mixture of subtelocentric, telocentric and metacentric chromosomes. The last group included the Japanese and Korean species. Lycoris anhuiensis was clustered within accessions of Lycoris longituba, suggesting that it could be recognized as a variety of L. longituba. Our ISSR data also suggested that L. straminea may be a hybrid between Lycoris chinensis and Lycoris radiata var. pumila, and that L. caldwellii, an allotriploid, may be of a hybrid origin of L. chinensis and L. sprengeri.  相似文献   

山东地区三株鸽Ⅰ型副粘病毒的分离及鉴定     

徐天刚  池振明  刘华雷  王志亮 《中国动物检疫》2007,24(5):29-31

2005年在山东地区部分肉鸽养殖场出现鸽子大量死亡现象,从死亡鸽中分离到三株鸽Ⅰ型副粘病毒(SD05027,SD05028,SD05029),其鸡胚平均死亡时间(MDT)分别为69h,69.6h,81.6h;鸡脑内接种指数(ICPI)为1.31,1.43,1.48,证明此次分离的三株病毒株均属速发型新城疫病毒。应用RT-PCR技术对F基因重要功能区片段扩增后进行序列测定,分析表明,F蛋白裂解位点处的序列(112R/K-R-Q-K-R-117F)与新城疫强毒在这一区域的序列相符。与多株已报道的NDV参考株相应片段进行序列比对和基因进化树分析,将其鉴定为基因VIb型。  相似文献   

Characterization of citrus germplasm including unknown variants by inter-simple sequence repeat (ISSR) markers     

A.R. Shahsavar  K. Izadpanah  E. Tafazoli  B.E. Sayed Tabatabaei 《Scientia Horticulturae》2007

Inter-simple sequence repeat (ISSR) markers were used to study phylogenetic relationships among 33 citrus genotypes including several undefined local or native varieties as well as some known varieties in the Fars Province of Iran.  相似文献   

Molecular characterization of Miraflores peach variety and relatives using SSRs     

M. Bouhadida  A.M. Casas  M.A. Moreno  Y. Gogorcena 《Scientia Horticulturae》2007

Some traditional peach varieties, originated from the region of Aragón (Spain), were analysed by SSRs (simple sequence repeats). The aim of this research was to characterize 19 clones related to Miraflores variety, with unknown pedigrees, to assess their genetic diversity and to elucidate their possible relationships with 10 traditional peach varieties. Twenty SSR primer pairs with high levels of polymorphism, which have been previously developed for peach, were used in this study. A total of 46 alleles were obtained for all the microsatellites studied, ranging from one to six alleles per locus, with a mean value of 2.3 alleles per locus. Fourteen SSRs were polymorphic in the set of varieties studied and permitted to distinguish 16 different genotypes out of the 30 initially studied, although fourteen ‘Miraflores’ clones showed identical gel profiles. The genetic distance matrix was used to construct neighbor joining cluster and to perform principal coordinate analysis which allowed the arrangement of all the genotypes according to their genetic relationships. The genetic relationships among these traditional peach varieties, and in particular among ‘Miraflores’ clones are discussed. The obtained results confirm that microsatellite markers are very useful for these purpose.  相似文献   

Molecular characterization and genetic relationship among almond cultivars assessed by RAPD and SSR markers     

B. Shiran  N. Amirbakhtiar  S. Kiani  Sh. Mohammadi  B.E. Sayed-Tabatabaei  H. Moradi 《Scientia Horticulturae》2007

RAPDs and SSRs were used to study the genetic diversity of Iranian almond cultivars and their relationship to important foreign cultivars and three related species. Eight unidentified almond Shahrodi cultivars and three wild almonds (Prunus communis, Prunus orientalis and Prunus scoparia) were also included. Of the primers tested, 42 (out of 80) RAPD and 18 (out of 26) SSR primers were selected for their reproducibility and high polymorphism. A total of 664 polymorphic RAPD bands were detected out of 729 bands. The number of presumed alleles revealed by the SSR analysis ranged from 3 to 10 alleles per locus with a mean value of 6.64 alleles per locus. Both techniques discriminated the genotypes very effectively, but only RAPDs were able to discriminate the cultivars Monagha and Sefied. Results demonstrated an extensive genetic variability within the tested cultivars as well as the value of SSR markers developed in peach for characterization of almond and related species of Prunus. Dice similarity coefficient was calculated for all pair wise comparisons and was used to construct a UPGMA dendrogram. For both markers a high similarity in dendrogram topologies was obtained although some differences were observed. All dendrograms, including that obtained by the combined use of both the marker data, depicted the phenetic relationships among the cultivars and species, depending upon their geographic region and/or pedigree information. Almond cultivars clustered with accession of P. communis showing their close relationship. P. orientalis and P. scoparia were clustered out of the rest of P. dulcis.  相似文献   

Use of Degenerate Primers in a RT-PCR Assay for the Identification and Analysis of Some Filamentous Viruses, with Special Reference to Clostero- and Vitiviruses of the Grapevine     

Pasquale Saldarelli  Adib Rowhani  Geoffrey Routh  Angelantonio Minafra  Michele Digiaro 《European journal of plant pathology / European Foundation for Plant Pathology》1998,104(9):945-950

RT-PCR with degenerate primers was used for the screening of the genome of some members of the Closterovirus, Vitivirus and Trichovirus genera. Two sets of primers, targeted to conserved sequences of the heat shock protein 70 homologue of closteroviruses or to the RNA dependent RNA polymerase genes of tricho- and vitiviruses, amplified the expected fragments from total RNA extracts or double-stranded RNAs of infected plants. Amplified cDNAs were cloned, sequenced and phylogenetically analyzed. Results support the allocation of grapevine viruses A, B, D and heracleum latent virus (HLV) in the genus Vitivirus, whereas, the detection of a HSP70 homologue in grapevine leafroll-associated viruses agrees with their assignment in the genus Closterovirus. The use of degenerate primers for the identification of grapevine viruses belonging to Vitivirus and Closterovirus genera is envisaged.  相似文献   

Succession and phylogenetic profile of eukaryotic communities in rice straw incorporated into a rice field: Estimation by PCR-DGGE and sequence analyses     

《Soil Science and Plant Nutrition》2013,59(5):585-594

Abstract

Succession and the phylogenetic profile of eukaryotic communities associated with rice straw decomposition in a rice field were studied using polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) analysis followed by 18S rDNA sequencing. Nylon mesh bags containing leaf sheaths or blades were buried in the plow layer of a rice field under flooded conditions after transplanting (Experiment 1) and under drained conditions during the off-crop season (Experiment 2). In addition, rice straw samples in Experiment 2 were taken out before plowing in spring and re-placed in the rice field under flooded conditions at transplanting. Statistical analyses based on DGGE patterns showed that eukaryotic communities were divided into two groups, namely group A before the placement in soil, after the mid-season drainage in Experiment 1 and under the drained conditions in Experiment 2 and group B before the mid-season drainage in Experiment 1 and under the flooded conditions in Experiment 2. Based on the sequence analysis of DGGE bands, which characterized the eukaryotic communities, succession of the communities was revealed, that is, most of the bands in group A were closely related to fungi, whereas the bands in group B were closely related to protozoa. These results indicated that eukaryotic communities associated with rice straw decomposition in the rice field are mainly affected by soil conditions, such as oxic or reduced conditions, irrespective of rice straw parts (leaf sheaths and blades).  相似文献   

Experimental Results on the Effects of Nonregular Spatial Patterns of Plants on Yield per Area     

M. Hühn 《Journal of Agronomy and Crop Science》1999,182(2):89-98

Based on several simplifying assumptions, a stochastic approach was developed which allows an estimation of the effects of nonregular spatial patterns of the distribution of individual plants on yield per area (F). In this approach, two random variables were attached to each plant: single plant yield (E) and individual space per plant (A). The latter was estimated by the area of Thiessen polygons. Yield per area was calculated theoretically by the expectation of the ratio E / A. Appropriate approximations of this expectation depend on the means (ē and ā), coefficients of variation (vE and vA) of E and A and their correlation (rEA). Yield per area can be decomposed into two additive terms: the first term gives the commonly used estimate ē/ā— or h(ā)/ā if a functional relationship between E and A is assumed: E = h(A). In this study, the two relationships E = k1 + k2 · ln A and E = A/(k3 + k4A) were used (with appropriately chosen constants k1, k2, k3, and k4). The second term in the decomposition of F can be interpreted as the effect of variable individual plant spaces on yield per area. In this paper, all theoretical concepts and results were applied to 17 experimental data sets of three cultivars of winter oilseed rape (Brassica napus L.). Single plant yields (E) and individual plant areas (A) were positively correlated with correlation coefficients from 0.64 up to 0.91. The ranges for both coefficients of variation were similar: 0.27 ≤ vE ≤ 0.65 and 0.28 ≤ vA ≤ 0.59. One obtains no significant differences in the goodness-of-fit for both tested relationships between E and A although the logarithmic relationship seems to be slightly superior. For only three data sets one obtains negative values for the percentage of the second term in the decomposition of F. This indicates an overestimation of yield per area by the commonly used estimates h(ā)/ā and ē/ā, respectively. These overestimations, however, are less than 5 %. In all other cases with positive values for the second term the yield per area is underestimated by the common estimates. For almost all data sets, however, the percentages of F which are explained by the common estimates are much larger than 90 %.  相似文献   

Irrigation Water Management for Efficient Water Use in Mulched Onion     

A. M. Abu-Awwad 《Journal of Agronomy and Crop Science》1999,183(1):1-7

Caused by the necessarily imperfect seed placement accuracy of sowing machines and, additionally, caused by many other biotic and abiotic factors, the resulting plant stands exhibit nonregular spatial distributions of its plants. Based on several simplifying assumptions, a stochastic approach is developed which allows an estimation of the effects of nonregular spatial patterns on yield per area. In this approach, two random variables are attached to each plant: single plant yield E and individual space A . The latter is estimated by the area of Thiessen polygons. Yield per area, calculated by the expectation of the ratio E/A , can be approximately expressed dependent on the means ( Ē and Ā ) and coefficients of variation ( v _E and v _A ) of E and A and their correlation ( r _EA ). In relation to the commonly used estimate Ē/Ā for yield per area, one obtains yield decreases if v _A / v _E  <  r _EA . This inequality, however, will be usually valid in the field of applications. The theoretical approaches and results were applied to three experimental data sets for drilled seeds of winter oilseed rape ( Brassica napus L.) (plant density: 60 plants m⁻², row distance: 10 cm). These data sets are characterized by different accuracies of longitudinal distributions within rows (58 %, 101 %, 150 %): yield depression increases with an increasing variability of plant distances within rows.  相似文献   

Near-shore distribution of Heaviside’s (Cephalorhynchus heavisidii) and dusky dolphins (Lagenorhynchus obscurus) at the southern limit of their range in South Africa     

《African Zoology》2013,48(1):78-91

Photo-identification surveys over three years along 390 km of coastline north of Cape Town, revealed that Heaviside’s dolphin distribution was consistent between years and higher in areas more exposed to swells and with greater long-term availability of small hake Merluccius capensis (their principal prey). Dusky dolphin sighting rates varied considerably between years, but were generally higher in areas with lower hake availability and sandier shores (mostly straighter coastline). Large groups of 50–200 dusky dolphins were only seen in St Helena Bay, the site of a wind-driven upwelling zone. Heaviside’s dolphins were found in shallower, cooler water than dusky dolphins and were more likely to be seen during brighter phases of the moon (when nocturnal light conditions may influence the vertical migration patterns of prey) and in areas of high hake abundance. Near-shore fishing activity was higher in the northern half of the study area and clustered around harbours. Set netting occurred only at Yzerfontein and St Helena Bay, but due to changes in the industry is currently thought to be a low threat to the population. Interactions between Heaviside’s and dusky dolphins were usually neutral and sympatry appears to be mediated by differences in overall range and the type and size of prey species taken.  相似文献