Molecular characterization of <Emphasis Type="Italic">Pythium</Emphasis> group F isolates by ribosomal-and intermicrosatellite-DNA regions analysis     

Valérie?VasseurEmail author  Patrice?Rey  Estelle?Bellanger  Yves?Brygoo  Yves?Tirilly 《European journal of plant pathology / European Foundation for Plant Pathology》2005,112(4):301-310

Pythium group F is a ubiquitous, though minor, pathogen in several soilless and soil cultures; investigations were carried out to analyze different regions of the DNA and better understand the nature of this group. Fourty-two isolates were obtained from a variety of plants (cucumber, lettuce, tomato) grown in soil or soilless cultures collected in various countries (Canada, Denmark, France, Norway, Sweden and United Kingdom). All Pythium group F isolates displayed amplified ITS1-5,8S-ITS2 ribosomal DNA region (rDNA) of similar length, whereas polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) revealed that, among the seven enzymes used, polymorphism was only identified with Hin6I. After cloning of ITS1-5,8S-ITS2 rDNA region from Pythium group F isolates that displayed restriction polymorphism patterns with Hin6I, comparisons of sequence and restriction mapping data showed a slight variation consisting in a single base change. Inter Simple Sequence Repeat (ISSR)-PCR method was also used to obtain data related to the entire genome and not only to a single DNA region. It identified repeated motifs in the genome of Pythium group F isolates. Two primers (CAC)₅ and (CCA)₅ detected polymorphism, and isolates were classified among 11 molecular clusters. The genetic diversity of this group was not correlated with the geographical locations or the host plants from which the isolates originated. Polymorphism of Pythium group F isolates pointed out by ISSR is discussed  相似文献   

Classification and Genetic Diversity of Three Hare Species in Xinjiang Based on Mitochondrial DNA     

SHAN Wenjuan  DAI Huiying  ZHANG Yucong 《畜牧兽医学报》1956,51(10):2403-2412

The study aimed to explore the phylogeny and genetic diversity of 3 hare species in Xinjiang by molecular genetics methods, define the relationship and taxonomy status, assess diversity level of Lepus in Xinjiang, and provide the basic data for conservation genetics of hares in Xinjiang and even in China. Three mitochondrial DNA genes, COI, ND4 and 16S rRNA, were used as molecular markers, and the sequences of 3 genes of 57 samples collected from 8 different regions (4 geographic groups) in Xinjiang were determined by PCR amplification and sequencing technology. After the sequences of COI, ND4 and 16S rRNA of each sample were revised and pooled together, data were analyzed with softwares such as MEGA 7, DNAsp 6, Arlequin 3.1 and MrBayes 3.2. A total of 43 haplotypes were detected from the combined sequences of 3 genes of 57 hare samples. Five distinct clades (A-E) and 3 clusters were clearly showed in phylogenetic tree and median-joining network (MJN). Furthermore, the genetic distance between 3 clusters reached the level of species (4.21%-9.09%). However, the genetic distance between hares from northern Xinjiang (Clade E) and those from central Xinjiang (Clade D) were not up to the level of species (≤2.26%) in the third cluster. The haplotype diversity (h) of Lepus yarkandensis, Lepus tibetanus pamirensis and Lepus tolai lehmanni were higher(0.979±0.014, 0.972±0.064 and 0.972±0.064, respectively), while the nucleotide diversity (π) of the L. t. lehmanni and L. t. centrasiaticus were higher (0.033±0.018 and 0.023±0.015, respectively). Based on comprehensive analysis of 3 genes of mitochondrion and reference with published research, it is suggested that hares from southwestern Pamir Plateau of Xinjiang should belong to L. t. pamirensis. Meanwhile,hares distributed in northern and central Xinjiang might be considered as L. t. lehmanni and L. t. centrasiaticus. Moreover, there is abundant genetic diversity in the 3 hare species in Xinjiang, and the obvious phylogeographic pattern is showed.  相似文献   

Prevalence and risk factors in serous arthritis in the carpal joint of Norwegian coldblooded trotters     

N. I. Dolvik 《Veterinary research communications》1994,18(4):281-288

Of 508 four-year-old coldblooded trotters examined for carpitis, 135 (27%) had the condition. Thirty horses had unilateral carpitis on the left frontlimb, 52 on the right frontlimb and 53 had bilateral carpitis. Of these horses, 105 were stallions, 135 were geldings and 269 were mares. The prevalence of carpitis in these three groups was 25%, 25% and 28%, respectively.Information was obtained on the training regimes in four periods of the life of 378 horses. The odds ratios for the training variables were of the same order in all four periods. In logistic regression analyses on the training variables for the first period for the variable percentage of carpitis within each progeny group (sire index), the odds ratio corresponding to a 10% increase in sire index was 1.7 (1.4, 2.1) (95% confidence interval of the odds ratio). The odds ratios for leaving the horses out in a paddock, walking in a jogcart and fast training, or not in each case, were 0.4 (0.2, 0.9), 2.5 (1.2, 5.3) and 2.0 (0.9, 4.4), respectively. This implies a decreased risk of developing carpitis for horses left out in a paddock as a two-year-old, and a 2.5 and 2.0 times increased risk of carpitis occuring in horses exposed to walking in a jogcart and fast training, respectively.Information on the feeding regimes during the first, second and third year collected by a questionnaire revealed no association with carpitis beyond that which could be ascribed to chance. The rations offered were within normal ranges except for calcium, which was below recommended levels.  相似文献   

Temporal genetic structure of an intergrade largemouth bass (Micropterus salmoides) population     

M. L. Brown  B. R. Murphy 《Ecology of Freshwater Fish》1994,3(1):18-24

Since 1972, numerous impoundments throughout Texas have been stocked with Florida largemouth bass Micropterus salmoides floridanus. In order to examine some of the long-term effects of such efforts, the present study summarizes past studies and complements those with more current observations on the intergrade largemouth bass population in Aquilla Lake, Hill Country, Texas. The reservoir received 4 annual stockings during the month of May from 1982 to 1985. Collections occurred periodically from February 1984 to June 1987, February to August 1988, and monthly from August 1991 to November 1992. Horizontal starch-gel electrophoresis was conducted to determine allele frequencies at loci sAAT-B*, SOD*1. Mean heterozygosity and percent introgression were highest for age-0 fish of the 1986 year class. Assortative mating was not apparent in 1991 or 1992 year classes. Collections of specific year classes over time consistently indicated decreases in the relative abundance of the northern phenotype. Relative to the northern phenotype, the abundance of Florida year classes remained relatively constant over time. Relative abundances of F₁ hybrids and F_x, intergrades (i. e., F₁) from specific year glasses were observed to generally increase with age.  相似文献   

Microsatellite amplification in <Emphasis Type="Italic">Brassica napus</Emphasis> cultivars: Cultivar variability and relationship to a long-term feral population     

J.M.?BondEmail author  R.J.?Mogg  G.R.?Squire  C.?Johnstone 《Euphytica》2004,139(2):173-178

Data from 83 Brassica microsatellites showed that null alleles, monomorphic loci and the amplification of multiple bands were relatively common. The data we have gathered here are essential for avoiding time consuming and costly optimization procedures. We used the data from 43 primers to assess the relationship between 13 cultivars and one long-term feral population. The established feral population was found to be most similar to, but genetically differentiated from, the winter cultivars. Some feral plants clustered tightly with the winter cultivars, suggesting that only a small proportion of the population was generated from recently spilt seed. Since there was no similarity between the spring cultivars and the feral population, we suggest that a GM trait introduced into a spring cultivar is less likely to persist in the environment.  相似文献   

Relationships between Longevity and Linear Type Traits in Holstein Cattle Population of Southern Africa   总被引：1，自引：0，他引：1  

Setati MM  Norris D  Banga CB  Benyi K 《Tropical animal health and production》2004,36(8):807-814

Relationships between longevity and linear type traits were estimated using data on 34,201 cows with lifetime information and linear type scores. The longevity trait considered was the number of lactations initiated and the linear type traits were rump height, body depth, angularity, rear udder height, fore udder attachment, udder depth, fore teat placement and fore teat length. Fixed effects included in the models were herd year, season of calving and herd-date of classification-classifier and days in milk. Age at first calving and age at classification were included as linear and quadratic covariates. Heritability estimates were low for longevity and moderate for most type traits except rump height and fore teat length. All the phenotypic correlations between longevity and the linear type traits were slightly positive (0.01 to 0.09) except the relationships with rump height and fore teat length which were -0.01 and -0.02, respectively. Genetic correlations between longevity and udder traits as well as angularity were moderate to high and positive (0.22 to 0.48). The only notable negative genetic correlations were longevity with body depth and fore teat length (-0.15 and -0.07, respectively). The genetic correlations suggest that selection for udder traits and angularity should improve longevity in the Holstein cattle population.  相似文献   

我国饲料型四倍体刺槐研究进展   总被引：15，自引：0，他引：15  

李云  姜金仲 《草业科学》2006,23(1):41-46

四倍体刺槐Robinia pseudoacacia自1997年引入我国以来,国内学者对其主要进行了如下几个方面的研究:1)不同地域不同立地条件下的适应性、生物量及叶片营养含量,肯定了饲料型四倍体刺槐的引种价值。2)常规和微繁育苗技术:常规育苗技术中的插根和嫁接繁殖技术已经成熟,达到了规模化生产的要求;微繁技术已找到了愈伤组织诱导及其分化为苗的培养基组合和培养条件以及组培苗的适宜移栽方式。3)抗盐基因遗传转化:已成功地将甜菜碱醛脱氢酶基因(BADH)转入四倍体刺槐,得到了15个抗盐植株,抗盐植株对NaCl的相对抗性提高了2‰~3‰。从引种、造林、微体快繁技术和遗传转化4个方面综述了这些研究成果,并探讨了存在的问题及可能的解决方法。  相似文献   

四川青衣江、岷江流域鹅观草遗传多样性的溶蛋白分析   总被引：4，自引：0，他引：4  

杨烈  张新全  杨武云  李俊  魏会廷 《草业学报》2006,15(4):12-20

用酸性聚丙烯酰胺凝胶电泳(A-PAGE)技术对采自青衣江流域和岷江流域的97份鹅观草材料的种子醇溶蛋白进行了分析。在对四川青衣江、岷江流域鹅观草居群的醇溶蛋白分析中,鹅观草材料醇溶蛋白带谱存在显著差异,共出现27个条带,其中多态性条带25条,占总条带数的92.59%;鹅观草的遗传相似性与其地理分布较为一致,表现在:1)青衣江、岷江流域鹅观草总遗传多样性指数为0.345 1,其中青衣江流域鹅观草遗传多样性指数为0.340 0,岷江流域鹅观草遗传多样性指数为0.310 0,表明青衣江流域鹅观草比岷江流域存在更为丰富的遗传变异,多样性指数更高;但流域间遗传分化系数仅为0.04,表明两江流域间遗传分化较小;各居群间遗传变异系数达0.326,表明总遗传多样性的32.6%来自居群间。2)在同一流域不同居群也存在遗传分化,其中青衣江流域各居群(除峨眉山居群分散聚在各居群外)能聚在一起;而岷江流域各居群在成都平原区段互相渗透,但能以上、中、下游区段聚开;青衣江流域各居群中以蒙山居群遗传多样性指数最高,达0.339 8,洪雅居群最低,仅0.094 7;岷江流域上游居群多样性指数最高,为0.301 7,而下游以乐山居群遗传多样性指数最低,为0.131 7。3)同一居群内鹅观草存在遗传变异,两江流域以蒙山居群变异最大,多样性指数最高。对居群遗传多样性的研究还表明,鹅观草垂直分布的遗传多样性高于水平分布;在成都平原居群由于生境片断化,导致岷江流域鹅观草生境片断化后小居群遗传分化增加,而整个成都平原“大居群”遗传多样性降低。  相似文献   

高粱抗蚜基因的遗传分析和SSR标记定位   总被引：16，自引：2，他引：14  

常金华  夏雪岩  张丽  李荣改  刘国庆  罗耀武 《草业学报》2006,15(2):113-118

高粱蚜是高粱生产中的一种毁灭性害虫,利用植物的固有抗性是防治害虫的最有效途径。经多年杂交选育获得1个对高粱蚜免疫的高粱品种“河农16”,用其作亲本与感蚜品系“千三”进行杂交,对亲本、F1、F2抗蚜性鉴定表明,“河农16”和F1对蚜虫表现高抗,F2抗感分离符合3∶1,该抗蚜性受一对基因控制,表现出显性遗传。用已定位到连锁群上的微卫星标记和分离群体分析法,对抗蚜基因进行了连锁分析,发现1个与抗蚜基因连锁的微卫星标记(SSR标记),与抗蚜基因的遗传距离为8.7 cM。该标记位于第9连锁群上,因而将该基因初步定位于第9连锁群。  相似文献   

基于COI基因的入侵物种旧金山卤虫遗传多样性与遗传分化研究     

付春正  王晖  Alireza Asem  郭慧芳  钱彬彬  刘文茹  沈春阳 《河北渔业》2022,(2):1-6,32

伴随着中国水产养殖业的快速发展,原产美国的旧金山卤虫(Artemia franciscana)被引入至我国渤海湾地区.为研究旧金山卤虫被引入中国后其基因组遗传多样性改变情况,本研究利用COI线粒体分子标记,评估旧金山卤虫在非原生栖息地,即唐山曹妃甸南堡镇(渤海湾,河北省)定殖的旧金山卤虫的遗传多样性现状.研究分析发现:...  相似文献