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Annamária Kiss Typhaine Moreau Vincent Mirabet Cerasela Iliana Calugaru Arezki Boudaoud Pradeep Das 《Plant methods》2017,13(1):114
Background
Developmental biology has made great strides in recent years towards the quantification of cellular properties during development. This requires tissues to be imaged and segmented to generate computerised versions that can be easily analysed. In this context, one of the principal technical challenges remains the faithful detection of cellular contours, principally due to variations in image intensity throughout the tissue. Watershed segmentation methods are especially vulnerable to these variations, generating multiple errors due notably to the incorrect detection of the outer surface of the tissue.Results
We use the level set method (LSM) to improve the accuracy of the watershed segmentation in different ways. First, we detect the outer surface of the tissue, reducing the impact of low and variable contrast at the surface during imaging. Second, we demonstrate a new edge function for a level set, based on second order derivatives of the image, to segment individual cells. Finally, we also show that the LSM can be used to segment nuclei within the tissue.Conclusion
The watershed segmentation of the outer cell layer is demonstrably improved when coupled with the LSM-based surface detection step. The tool can also be used to improve watershed segmentation at cell-scale, as well as to segment nuclei within a tissue. The improved segmentation increases the quality of analysis, and the surface detected by our algorithm may be used to calculate local curvature or adapted for other uses, such as mathematical simulations.3.
Josephine A. Dornbusch Laura E. Selmic Pin‐Chieh Huang Jonathan P. Samuelson Eric M. McLaughlin Vincent A. Wavreille Jessica A. Ogden Brittany Abrams Alex Kalamaras Eric Green Eric T. Hostnik Lincoln Every Jason A. Fuerst Ryan Jennings Christopher Premanandan Joshua N. Lorbach Sarah C. Linn Aneesh Alex Janet E. Sorrells Lingxiao Yang Stephen A. Boppart 《Veterinary surgery : VS》2021,50(1):111-120
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Vegetable oils, synthetic esters (including transesterified oils) and mineral oils are the main classes of oil used in pesticide formulations. Biodegradation is a major route for the removal of oils from soil systems. Most of the oils used in pesticide formulations are degraded substantially in the laboratory tests that are used to assess aquatic biodegradability. The susceptibility of different oils to biodegradation can be explained in terms of the metabolic capacity of common microorganisms. Fewer soil biodegradability tests have been carried out with oils, but the available data suggest that the mode of degradation is not very different from that in aquatic systems. Supplements of inorganic nutrients (in particular nitrogen) are needed to stimulate microbial activity in soils containing the high concentrations of oil that can be encountered in the event of a spill. However, oils are applied at such low rates in pesticide form illations (maximum of 5g oil m? soil) that nutrient availability is unlikely to affect the rate of biodegradation in the field. 相似文献
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ABSTRACT Diverse isolates of the soilborne wilt fungi Verticillium dahliae and V. albo-atrum were studied to understand the nature and origins of those infecting cruciferous hosts. All isolates from cruciferous crops produced microsclerotia, and the majority produced long conidia with a high nuclear DNA content; these isolates were divided into two groups by amplified fragment length polymorphism (AFLP) analysis. One group could be subdivided by other criteria such as rRNA sequences and mitochondrial DNA restriction fragment length polymorphism (RFLP) analysis. Two crucifer isolates were short spored and had a low nuclear DNA content. The results are consistent with the crucifer isolates being interspecific hybrids. The long-spored isolates are best regarded as amphihaploids (or allodiploids) with the AFLP groups probably each representing separate interspecific hybridization events. The short-spored crucifer isolates appear to be derived from interspecific hybrids and are here called 'secondary haploids'. Molecular evidence suggests that one parent in the crosses was similar to V. dahliae. The other parent of the amphihaploids seems to have been more similar to V. albo-atrum than to V. dahliae, but was distinct from all isolates of either species so far studied. The implications for the taxonomy of crucifer isolates are discussed and the use of the name V. longisporum, proposed elsewhere for just some of these isolates, is discouraged. 相似文献