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Identification of a diverse mini‐core panel of Indian rice germplasm based on genotyping using microsatellite markers 
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下载免费PDF全文 Kapil K. Tiwari Anshuman Singh Sasmita Pattnaik Maninder Sandhu Sukhdeep Kaur Sourabh Jain Sushma Tiwari Shweta Mehrotra Mahender Anumalla Rashmita Samal Jyoti Bhardwaj Neha Dubey Vikrant Sahu Gayle A. Kharshing Patu K. Zeliang Kadiri Sreenivasan Pankaj Kumar Swarup K. Parida Sevanthi V. A. Mithra Vandana Rai Wricha Tyagi Pawan K. Agrawal Atmakuri R. Rao Arunava Pattanayak Girish Chandel Ashok K. Singh Ishwari S. Bisht Kangila V. Bhat Gundimeda J. N. Rao Jitendra P. Khurana Nagendra K. Singh Trilochan Mohapatra 《Plant Breeding》2015,134(2):164-171
Identification of a small core germplasm set representing the available genetic diversity is essential for its proper evaluation and subsequent utilization in rice improvement programmes. For constituting a small diverse mini‐core panel of Indian rice germplasm, a representative set of 6912 accessions drawn based on their geographic origin from the whole rice germplasm collection available in the National Gene Bank was genotyped using 36 microsatellite markers. Automated fragment analysis of amplicons yielded a total of 435 alleles, with an average 12.4 and range of 3–29 alleles per locus. Polymorphism information content (PIC) ranged from 0.08 (RGNMS190) to 0.86 (RM552) with an average of 0.528. Based on genotyping data, a mini‐core consisting of 98 genotypes was identified. Ninety‐four per cent of the alleles present in the core set were present in the mini‐core. The identified small but diverse panel will be useful for further intensive trait‐specific evaluation and utilization in allele mining. 相似文献
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Anumalla Mahender Sharat Kumar Pradhan Onkar Nath Singh 《Archives of Agronomy and Soil Science》2018,64(4):449-464
The genetic improvement of rice over past decades has led to the loss of several genes which are responsible for nutrient acquisition and soil-related stresses. Phosphorus (P) is a non-renewable resource and inevitable element of metabolic functions in plants. By pedogenesis process, organic matter contributes to renewing soil P in lesser extent. Therefore, improvement of the P use efficiency is one of the most imperative traits in rice breeding program, which is governed by quantitative trait loci (QTLs). QTLs controlling low P associated morphological and physiological traits in rice were investigated mostly during last one and half decade by using diverse mapping populations. Comprehensive and meticulous survey from literature, we found that to date 133 P associated QTLs of morpho-physiological traits were reported to be distributed on twelve chromosomes and majority of these QTLs localized on chromosome 1, 2 and 12. For the first time, a complete figure is presented in this review on chromosome wise with respective QTLs associated with low P for easy understanding and selecting markers for future prospect. Further, it is necessary to understand the molecular mechanisms and regulation of genes and traits associated with low P to develop tolerant rice cultivars using functional marker-assisted selection. 相似文献
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Venkateswarlu Malisetty Ramana Reddy Yerradoddi Nagalakshmi Devanaboina Mahender Mallam Pavani Mitta 《Tropical animal health and production》2014,46(5):759-764
An experiment was conducted by feeding sorghum straw (Sorghum bicolor) based complete rations at roughage concentrate ratio 70:30 (CR-I), 60:40 (CR-II), 50:50 (CR-III), and 40:60 (CR-IV) for 180 days to find out suitable ratio of sorghum straw in the complete ration (mash form) on nutrient utilization and nitrogen balance in Nellore ram lambs. The DMI (g/day) increased significantly (P?<?0.05) as level of concentrate increased in complete rations. No significant difference was found in digestibilities of proximate nutrients. However, CP digestibility was higher either significantly or nonsignificantly by 2.12, 5.50, and 9.36 %, respectively, in lambs fed with CR-II (P?>?0.05), CR-III (P?>?0.05), and CR-IV (P?<?0.05) rations in comparison to lambs fed with CR-I ration. Furthermore, CP digestibility was higher by 7.09 and 3.66 % in lambs fed with CR-IV ration than those fed with CR-II (P?<?0.05) and CR-III (P?>?0.05) ration. The average CWC digestibility coefficients were comparable among four rations. The N intake (g/day) was significantly (P?<?0.01) different and progressively increased by 31.46, 48.69, and 82.86 % in ram lambs fed with CR-II, CR-III, and CR-IV rations, respectively, in comparison to CR-I ration. The N balance (g/day) was higher either significantly or nonsignificantly by 34.46 (P?>?0.05), 133.46 (P?<?0.01), and 198.87 % (P?<?0.01) with CR-II, CR-III, and CR-IV rations, respectively, in comparison to CR-I ration. Based on results, it is inferred that the level of sorghum straw in complete ration had no effect on digestibility of nutrients barring crude protein in Nellore ram lambs. 相似文献
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Subramaniam Gopalakrishnan R. Mahender Kumar Pagidi Humayun V. Srinivas B. Ratna Kumari R. Vijayabharathi Amit Singh K. Surekha Ch. Padmavathi N. Somashekar P. Raghuveer Rao P. C. Latha L. V. Subba Rao V. R. Babu B. C. Viraktamath V. Vinod Goud N. Loganandhan Biksham Gujja Om Rupela 《Paddy and Water Environment》2014,12(1):79-87
Field experiments were conducted at DRR farm located at ICRISAT, Patancheru, in sandy clay loam soils during four seasons, Kharif 2008, Rabi 2008–2009, Kharif 2009 and Rabi 2009–2010, to investigate growth parameters, water-saving potential, root characteristics, chemical, biological, and microbial properties of rhizosphere soil, and grain yield of rice (Oryza sativa L.) by comparing the plants grown with system of rice intensification (SRI) methods, with organic or organic + inorganic fertilization, against current recommended best management practices (BMP). All the growth parameters including plant height, effective tillers (10–45 %), panicle length, dry matter, root dry weight (24–57 %), and root volume (10–66 %) were found to be significantly higher with in SRI-organic + inorganic over BMP. With SRI-organic fertilization, growth parameters showed inconsistent results; however, root dry weight (3–77 %) and root volume (31–162 %) were found significantly superior compared to BMP. Grain yield was found significantly higher in SRI-organic + inorganic (12–23 and 4–35 % in the Kharif and Rabi seasons, respectively), while with SRI-organic management, yield was found higher (4–34 %) only in the Rabi seasons compared to BMP. An average of 31 and 37 % of irrigation water were saved during Kharif and Rabi seasons, respectively, with both SRI methods of rice cultivation compared to BMP. Further, total nitrogen, organic carbon%, soil dehydrogenase, microbial biomass carbon, total bacteria, fungi, and actinomycetes were found higher in the two SRI plots in comparison to BMP. It is concluded that SRI practices create favorable conditions for beneficial soil microbes to prosper, save irrigation water, and increase grain yield. 相似文献
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Shreya Srivastava Basdeo Kushwaha Jyoti Prakash Manmohan Pandey Suyash Agarwal Ravindra Kumar N. S. Nagpure Mahender Singh Paramananda Das Chaitanya Joshi Joy Krushna Jena 《Fisheries Science》2017,83(2):265-272
Magur Clarias batrachus is an indigenous catfish, commonly found in India, Nepal, Bhutan and Bangladesh. Presently, the populations of magur have declined rapidly in their natural habitat mainly due to overexploitation and habitat degradation. Understanding the population genetic structure of the species has significance in improvement of stocks and in conservation of the species. In the present study, simple sequence repeat (SSR) markers were used to differentiate the populations of magur, collected from three geographic locations. For this, a total of 31,814 SSRs were mined from the de novo assembled pooled of whole genome sequence data of C. batrachus. A bioinformatics pipeline with stringent criteria was applied to analyze the data which resulted in selection of 30,142 microsatellite loci falling in the intergenic region. Out of the 25 loci selected for primer development, 16 loci were successfully amplified and 9 loci were found to be polymorphic in this species. The average observed as well as expected heterozygosity in the loci across different stocks varied from 0.652 to 0.688 and 0.864 to 0.873, respectively. These three populations were further segregated into two clusters based on the NJ genetic distance. The Lucknow population formed one cluster, while the Bhubaneswar and Kolkata populations constituted another cluster. A comparable finding was also deduced from the STRUCTURE analyses. The results revealed significant variation among the populations of C. batrachus under study. 相似文献
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