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1.
Pig chromosome 7 (SSC 7) has been shown to be rich in QTL affecting performance and quality traits. Most studies mapped the QTL close to the swine leukocyte antigens (SLA), which has a large effect on adaptability and natural selection. Previous comparative mapping studies suggested that the 15-cM region limited by markers LRA1 (mapped at 55 cM) and S0102 (mapped at 70 cM) contains hundreds of genes. To decrease the number of candidate genes, we improved the mapping resolution with a genetic chromosome dissection through a backcross recombinant progeny test program between Meishan (MS) and European (EU; i.e., Large White or Landrace) breeds. Three first-generation backcross--(EU x MS) x EU--and two second-generation backcross--([EU x MS] x EU) x EU--sires carrying a recombination in the QTL mapping interval were progeny-tested (i.e., measured for a total of 44 growth, fatness, carcass and meat quality traits). Progeny family size varied from 29 to 119 pigs. Animals were genotyped for markers covering the region of interest. Progeny-test results allowed the QTL interval to be decreased from 15 to 20 cM down to 10 cM, and even less than 6 cM if we assumed that the EU pigs used in this study share only one QTL allele. Except for a putative QTL affecting some carcass composition traits, the SLA is excluded as a candidate region, suggesting that it might be possible to apply a marker-assisted selection strategy for this QTL, while controlling SLA allele diversity. The strong QTL effects remaining in animals with only 12.5% (issued from first-generation backcross boars) and 6.25% (issued from second-generation back-cross boars) Meishan genetic background shows that epistatic interactions are likely to be limited. Finally, the QTL does not have strong effects on meat quality traits.  相似文献   
2.
Background, Aim and Scope   The sulphidization process in relatively clean sediments sampled in a mudflat of the Authie estuary (located in Northern France) has been studied by coupling geochemical expertise and the use of fatty acids (FAs) as biochemical markers. Materials and Methods: Three sediment cores have been sampled in September 2003, November 2003 and May 2004, and cut every 2 cm in the field under nitrogen atmosphere so as to prevent any oxidation of reduced species. In the solid phase, reduced sulphur compounds, e.g. AVS (Acid Volatile Sulphides) and CRS (Chromium Reducible Sulphur) [including also the calculation of the degree of sulphidization (DOS) and the degree of pyritization (DOP)], and fatty acids have been carried out. Eh, pH, metal species (mostly iron and manganese), dissolved S(-II) and sulphate have also been determined in the porewaters. Results: The sediment cores display a lot of differences due to the high sedimentation rate and the seasonal evolution as well. The presence of Mn2+, Fe2+, S(-II) and the decrease of the redox potential and the concentration of sulphates clearly indicate early diagenetic transformations promoted by the bacterial activity. Acid Volatile Sulphides are produced in the first cm and are stabilized with depth. A rapid decrease of FAs concentrations in September and May has also been pointed out owing to a rapid consumption of the labile organic matter. Several categories of FAs have been separated and most of them belong here to the saturated and monounsaturated groups. In the saturated group, branched chain FAs, iso and anteiso C15:0 are predominant and represent the bacterial imprint in the sediments. Maximum proportions are observed between 5 and 10 cm in September, and between 13 and 17 cm in November and May. Discussion: As sulphate concentrations remain high in the porewater, the limitation of the sulphidization process in our sediments must be due to a lack of labile organic matter input. The presence of pyrite in our sediment is bound to its formation at the water-sediment interface, where partial reoxidation may take place. However, at deeper depths, pyritization processes does not continue any more. Presence of maximum, dissolved S(-II) concentrations have been observed, simultaneously with maximum proportion relative to total FAs of iso and anteiso C15:0, and, in September, with an increase in proportions of C18:1ω7. This indicates the presence of sulphate-reducing bacterial activity at the time when the sediments were sampled. However, no close correspondence between bacterial FAs concentrations and S(-II) concentrations has been found. Conclusions: In each core, the sulphidization process is not complete, and this is probably due to the lack of biodegradable organic matter, which appears as the limiting factor from a qualitative point of view. S(-II) production in porewaters is linked with the activity of sulphate-reducing bacteria. Seasonal effects have also been pointed out and, especially, a more important input of diatom organic matter in May when compared to September and November. Recommendations and Perspectives: Fatty acid analyses represent an original and a useful tool for a better understanding of an early diagenetic process in the first cm of the sediments. More studies should be carried out associating inorganic chemical parameters and chemical biomarkers for pointing out stronger and more reproducible relations. Moreover, the use of microcosms in our group is on the way to take into account the kinetics of the organic matter degradation during the early diagenesis.  相似文献   
3.
The aim of this work was to estimate whether genetic dissection of QTL on chromosomes 1, 2, 4, and 7, detected in an F2 Meishan x Large White population, can be achieved with a recombinant back-cross progeny test approach. For this purpose, a first generation of backcross (BC1) was produced by using frozen semen of F1 Large White x Meishan boars with Large White females. Four BC1 boars were selected because of their heterozygosity for at least 1 of the 4 regions. The BC1 boars were crossed with Large White sows, and the resulting BC2 offspring were measured for several growth and body composition traits. Contrary to the F2 animals, BC2 animals were also measured for meat quality traits in adductor, gluteus superficialis (GS), longissimus dorsi, and biceps femoris (BF) muscles. Each BC1 boar was tested for a total of 39 traits and for the 4 regions with statistical interval mapping analyses. The QTL effects obtained in BC1 families showed some differences compared with those described in F1 families. However, we confirmed QTL effects for growth in the SW1301-SW2512 markers interval on chromosome 1 and also for body composition in the SW1828-SW2512 markers interval on chromosome 1, in the SW2443-SWR783 markers interval on chromosome 2, and in the SW1369-SW632 markers interval on chromosome 7. In addition, we detected new QTL for growth traits on chromosome 2 and for meat quality traits on chromosomes 1 and 2. Growth of animals from weaning to the end of the test was influenced by the IGF2 gene region on chromosome 2. Concerning meat quality, ultimate pH of adductor, longissimus dorsi, and BF were affected by the interval delimited by UMNP3000 and SW2512 markers on chromosome 1, and a* of GS, L* of BF, and water-holding capacity of GS were affected by QTL located between marker loci SW2443 and SWR783 on chromosome 2. Recombinant progeny testing appeared to be a suitable strategy for the genetic dissection of the QTL investigated.  相似文献   
4.
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5.
Using ICP-AES and ICP-MS, several metals were analyzed in water and suspended particulate matter (SPM) samples collected under normal turbidity conditions at various stations from Deûle river (in northern France) to assess the impact of a former smelting plant on the fate of particulate elements and on the water quality in this aquatic environment. Compared to their regional background, particulate Pb, Zn and Cd were found to be most enriched, suggesting anthropogenic inputs from bed sediments into the water column mainly due to physical disturbances induced by barges traffics. Conversely, no significant enrichments of particulate metals such as Cu, Cr and Ni were observed in Deûle SPM. Characterization of SPM with analyses of mineralogical and chemical compositions—using environmental scanning electron microscopy equipped with an energy dispersive X-ray spectrometer (ESEM/EDS)—indicated the presence of micro-specimens attributed to anthropogenic minerals, mostly PbS and ZnS. The calculated enrichment index (or the geoaccumulation index, I geo), enrichment factor (EF) and the partition coefficient (K d) confirmed that SPM was strongly polluted in cadmium, lead and zinc, moderately polluted in copper and unpolluted in chromium and nickel. Based on the analytical data obtained for SPM from the BCR (European Community Bureau of Reference) sequential extraction scheme, it was concluded that: (i) the reducible phases were largely more important for the binding of Pb and Cd than that of Zn and Ni and in a lesser extent Cu and Cr; (ii) copper was found to be mostly associated with the sulphides/organics fraction; (iii) chromium with a lithogenic origin was extracted in the largest percentage in the residual phase; and (iv) zinc was bound to the exchangeable-carbonate phase in the largest percentage in the particles analysed, followed by nickel and cadmium, suggesting that these metals might be easily remobilized if changes in environmental conditions would occur.  相似文献   
6.
Litter characteristics at birth were recorded in 4 genetic types of sows with differing maternal abilities. Eighty-two litters from F(1) Duroc x Large White sows, 651 litters from Large White sows, 63 litters from Meishan sows, and 173 litters from Laconie sows were considered. Statistical models included random effects of sow, litter, or both; fixed effects of sow genetic type, parity, birth assistance, and piglet sex, as well as gestation length, farrowing duration, piglet birth weight, and litter size as linear covariates. The quadratic components of the last 2 factors were also considered. For statistical analyses, GLM were first considered, assuming a binomial distribution of stillbirth. Hierarchical models were also fitted to the data to take into account correlations among piglets from the same litter. Model selection was performed based on deviance and deviance information criterion. Finally, standard and robust generalized estimating equations (GEE) procedures were applied to quantify the importance of each effect on a piglet's probability of stillbirth. The 5 most important factors involved were, in decreasing order (contribution of each effect to variance reduction): difference between piglet birth weight and the litter mean (2.36%), individual birth weight (2.25%), piglet sex (1.01%), farrowing duration (0.99%), and sow genetic type (0.94%). Probability of stillbirth was greater for lighter piglets, for male piglets, and for piglets from small or very large litters. Probability of stillbirth increased with sow parity number and with farrowing duration. Piglets born from Meishan sows had a lower risk of stillbirth (P < 0.0001) and were little affected by the sources of variation mentioned above compared with the 3 other sow genetic types. Standard and robust GEE approaches gave similar results despite some disequilibrium in the data set structure highlighted with the robust GEE approach.  相似文献   
7.
To evaluate adverse impacts of metal pollution originating from smelting activities on the aquatic ecosystem of Deûle river in northern France, water samples were collected from five selected stations along a contaminated region of this river (during two surveys: April–June 2005 and April–May 2007). All samples were analysed using inductively coupled plasma (ICP) atomic emission spectroscopy and/or ICP-mass spectrometry. Both the concentrations of dissolved and particulate elements were determined, and analytical data were compared with national and international water/particle quality guidelines as well as with some values reported in the literature for polluted rivers. For all the metals studied (i.e. Cd, Cr, Cu, Mn, Ni, Pb and Zn), our investigations showed that the effects of the dissolved phase on this aquatic medium were weak, according to water quality status established by US Environmental Protection Agency, USEPA (1994, 1999). Conversely, the levels of metals in suspended particulate matter were found to be much higher than local background contents and natural reference levels in French catchments. These levels were further quantified as “serious” contamination, i.e. above the “red” range that was previously elaborated by most existing metal-contamination scales in French basins of similar geology. The affinity of these metals for the particulate phase in Deûle waters follows the order: Cd >Cr > Pb > Zn = Mn > Cu > Ni. The trace metals released from anthropogenic activities were found to be partly bound to the reactive particulate phase, calcite, which is sensitive to physico-chemical variations occurring in the river ecosystem. To appraise the risk of ecotoxicity by metals, predictions on the ability to release metallic pollutants from calcite into waters were made successfully by testing three equilibrium geochemical speciation models (JCHESS, VISUAL MINTEQ and WINHUMIC) in which soluble organic matter was taken into account. Calculations showed that metal–water–calcite systems in Deûle River are close to thermodynamic equilibrium with generation of solid solutions, MeαCa1-αCO3, by (co)precipitation and/or adsorption reactions. On the basis of results mentioned here, more measurements of river chemistry and assessments of predictive capabilities of chosen water-quality guidelines with time would be developed in aquatic and calcareous areas for controlled dredging operations or other treatment engineering works.  相似文献   
8.
Data were collected in the course of a divergent selection experiment for residual feed intake (RFI) of Large White growing pigs. This data set was used to estimate (i) heritability for RFI and genetic correlations of RFI with growth and carcass traits within the three sexes (male, castrate and female) and (ii) genetic correlations between sexes for these traits. Individual feed intake of animals raised in collective pens was measured by single-place electronic feeders on 1121 males (candidates for selection), 508 females and 535 castrates (sibs of candidates). Variance components were estimated using the REML methodology applied to a multitrait animal model. Estimates of heritability for RFI were 0.16 ± 0.04, 0.16 ± 0.08 and 0.23 ± 0.10 for males, females and castrates, respectively. Estimates of genetic correlations between sexes for homologous traits were not significantly different from 1 (0.88 to 0.99 for RFI, 0.79 to 0.99 for growth traits and 0.65 to 0.99 for carcass composition traits). The relatively low genetic correlations between castrates and males or females for backfat thickness (0.65 and 0.69, respectively) suggest the presence of genotype by sex interactions for this trait.  相似文献   
9.
A QTL analysis of female reproductive data from a 3-generation experimental cross between Meishan and Large White pig breeds is presented. Six F(1) boars and 23 F(1) sows, progeny of 6 Large White boars and 6 Meishan sows, produced 502 F(2) gilts whose reproductive tract was collected after slaughter at 30 d of gestation. Five traits [i.e., the total weight of the reproductive tract, of the empty uterine horns, of the ovaries (WOV), and of the embryos], as well as the length of uterine horns (LUH), were measured and analyzed with and without adjustment for litter size. Animals were genotyped for a total of 137 markers covering the entire porcine genome. Analyses were carried out based on interval mapping methods, using a line-cross regression and a half-full sib maximum likelihood test. A total of 18 genome-wide significant (P < 0.05) QTL were detected on 9 different chromosomes (i.e., SSC 1, 5, 6, 7, 9, 12, 13, 18, and X). Five genome-wide significant QTL were detected for LUH, 4 for weight of the empty uterine horns and WOV, 2 for total weight of the reproductive tract, and 1 for weight of the embryos. Twenty-two additional suggestive QTL were also detected. The largest effects were obtained for LUH and WOV on SSC13 (9.2 and 7.0% of trait phenotypic variance, respectively). Meishan alleles had both positive (e.g., on SSC7) and negative effects (e.g., on SSC13) on the traits investigated. Moreover, the QTL were generally not fixed in founder breeds, and opposite effects were in some cases obtained in different families. Although reproductive tract characteristics had only a moderate correlation with reproductive performances, most of the major QTL detected in this study were previously reported as affecting female reproduction, generally with reduced significance levels. This study thus shows that focusing on traits with high heritability might help to detect loci involved in low heritability major traits for breeding.  相似文献   
10.
Residual feed intake (RFI) has been explored as an alternative selection criterion to feed conversion ratio to capture the fraction of feed intake not explained by expected production and maintenance requirements. Selection experiments have found that low RFI in the growing pig is genetically correlated with reduced fatness and feed intake. Selection for feed conversion ratio also reduces sow appetite and fatness, which, together with increased prolificacy, has been seen as a hindrance for sow lifetime performance. The aims of our study were to derive equations for sow RFI during lactation (SRFI) and to evaluate the effect of selection for RFI during growth on sow traits during lactation. Data were obtained on 2 divergent lines selected for 7 generations for low and high RFI during growth in purebred Large Whites. The RFI was measured on candidates for selection (1,065 pigs), and sow performance data were available for 480 sows having from 1 to 3 parities (1,071 parities). Traits measured were sow daily feed intake (SDFI); sow BW and body composition before farrowing and at weaning (28.4 ± 1.7d); number of piglets born total, born alive, and surviving at weaning; and litter weight, average piglet BW, and within-litter SD of piglet BW at birth, 21 d of age (when creep feeding was available), and weaning. Sow RFI was defined as the difference between observed SDFI and SDFI predicted for sow maintenance and production. Daily production requirements were quantified by litter size and daily litter BW gain as well as daily changes in sow body reserves. The SRFI represented 24% of the phenotypic variability of SDFI. Heritability estimates for RFI and SRFI were both 0.14. The genetic correlation between RFI and SRFI was 0.29 ± 0.23. Genetic correlations of RFI with sow traits were low to moderate, consistent with responses to selection; selection for low RFI during growth reduced SDFI and increased number of piglets and litter growth, but also increased mobilization of body reserves. No effect on rebreeding performance was found. Metabolic changes previously observed during growth in response to selection might explain part of the better efficiency of the low-RFI sows, decreasing basal metabolism and favoring rapid allocation of resources to lactation. We propose to consider SRFI as an alternative to SDFI to select for efficient sows with reduced input demands during lactation.  相似文献   
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