Amplification of the <Emphasis Type="Italic">Phytophthora infestans</Emphasis> RG57 loci Facilitates <Emphasis Type="Italic">in planta</Emphasis> T-RFLP Identification of Late Blight Genotypes     

Champa P. Wijekoon  Binod B. Pageni  Melanie L. Kalischuk  Newton Z. Lupwayi  Lawrence M. Kawchuk 《American Journal of Potato Research》2017,94(3):251-257

Late blight, caused by the oomycete Phytophthora infestans (Mont.) de Bary, is a devastating disease in potato and tomato and causes yield and quality losses worldwide. The disease first emerged in central America and has since spread in North America including the United States and Canada. Several new genotypes of P. infestans have recently emerged, including US-22, US-23 and US-24. Due to significant economic and environmental impacts, there has been an increasing interest in the rapid identification of P. infestans genotypes. In addition to providing details regarding the various phenotypic characteristics such as fungicide resistance, host preference, and pathogenicity associated with various P. infestans genotypes, information related to pathogen movement and potential recombination may also be determined from the genetic analyses. Restriction fragment length polymorphism (RFLP) analysis with the RG57 loci is one of the most reliable procedures used to genotype P. infestans. However, the RFLP procedure requires propagation and isolation of the pathogen and relatively large amounts of DNA. Isolation of the late blight pathogen is sometimes impossible due to the poor condition of the infected tissues or the presence of fungicide residues. In this study, we describe a procedure to identify P. infestans at the molecular level in planta using terminal restriction fragment length polymorphism (T-RFLP) of the RG57 loci. This T-RFLP assay is sufficiently sensitive to detect and differentiate P. infestans genotypes directly in planta without propagation and isolation of the pathogen, to facilitate the timely implementation of best management practices.  相似文献   

Soil organic matter fractionation as a tool for predicting nitrogen mineralization in silty arable soils     

M. A. Kader  S. Sleutel  S. A. Begum  K. D’Haene  K. Jegajeevagan  S. De Neve 《Soil Use and Management》2010,26(4):494-507

After decades of searching for a practical method to estimate the N mineralization capacity of soil, there is still no consistent methodology. Indeed it is important to have practical methods to estimate soil nitrogen release for plant uptake and that should be appropriate, less time consuming, and cost effective for farmers. We fractionated soil organic matter (SOM) to assess different fractions of SOM as predictors for net N mineralization measured from repacked (disturbed) and intact (undisturbed) soil cores in 14 weeks of laboratory incubations. A soil set consisting of surface soil from 18 cereal and root‐cropped arable fields was physically fractionated into coarse and fine free particulate OM (coarse fPOM and fine fPOM), intra‐microaggregate particulate OM (iPOM) and silt and clay sized OM. The silt and clay sized OM was further chemically fractionated by oxidation with 6% NaOCl to isolate an oxidation‐resistant OM fraction, followed by extraction of mineral bound OM with 10% HF (HF‐res OM). Stepwise multiple linear regression yielded a significant relationship between the annual N mineralization (kg N/ha) from undisturbed soil and coarse fPOM N (kg N/ha), silt and clay N (kg N/ha) and its C:N ratio (R² = 0.80; P < 0.01). The relative annual N mineralization (% of soil N) from disturbed soils was related to coarse fPOM N, HF‐res OC (% of soil organic carbon) and its C:N ratio (R² = 0.83; P < 0.01). Physical fractions of SOM were thus found to be the most useful predictors for estimating the annual N mineralization rate of undisturbed soils. However, the bioavailability of physical fractions was changed due to the disturbance of soil. For disturbed soils, a presumed stable chemical SOM fraction was found to be a relevant predictor indicating that this fraction still contains bio‐available N. The latter prompted a revision in our reasoning behind selective oxidation and extraction as tools for characterizing soil organic N quality with respect to N availability. Nonetheless, the present study also underscores the potential of a combined physical and chemical fractionation procedure for isolating and quantifying N fractions which preferentially contribute to bulk soil N mineralization. The N content or C:N ratio of such fractions may be used to predict N mineralization in arable soils.  相似文献   

Effect of calcium supplements to a maize-soya diet on the bioavailability of minerals and trace elements and the accumulation of heavy metals in growing rats     

Walter A  Rimbach G  Most E  Pallauf J 《Journal of veterinary medicine. A, Physiology, pathology, clinical medicine》2000,47(6):367-377

Thirty-five (five groups with seven animals each) male albino rats (initial average weight = 44 g) were fed phytate-rich diets (analysed phytic acid concentration = 6.9 g/kg) based on maize and soy bean meal (5 g Ca, 3 g P, 1.2 g Mg, 23 mg Zn, 10 mg Pb, 5 mg Cd/kg diet). Experimental diets were supplemented with 0, 2, 4, 6 and 8 g calcium from CaCO3 per kg. The supplementation of increasing amounts of calcium resulted in a dose-dependent decrease in the apparent absorption of phosphorus. Furthermore, apparent zinc absorption and femur zinc concentration were moderately decreased due to the calcium supplementation. Kidney Cd concentration was significantly lower in rats that were fed the high calcium diets in comparison with the control animals. Femur lead concentration and hepatic delta-aminolevulinic acid dehydratase, which are known to be sensitive parameters of lead accumulation remained unchanged by the different dietary treatments. Magnesium absorption as well as liver and plasma zinc concentration and activity of plasma alkaline phosphatase were also unaffected. Although calcium supplementation may lead to a decrease in the accumulation of certain heavy metals such as cadmium, the carry-over of lead was not affected under the given experimental conditions. Furthermore, calcium-phytate-zinc interactions may adversely affect zinc bioavailability in growing rats.  相似文献   

Comparison of structural diversity of tree-crop associations in Peripheral and Buffer zones of Gachabari Sal forest area, Bangladesh     

M. M. Rahman  H. Vacik  F. Begum  A. Nishad  K. K. Islam 《林业研究》2007,18(1):23-26

The structural diversity of different tree-crop associations were studied at Gachabari Sal forest area of Madhupur Garh on Buffer and Peripheral Zone during 2006. The total density, basal area of trees in the Buffer and Peripheral Zone were 155.5 trees·hm^-2, 795.4 trees·hm^-2 and 3.9 m^2·hm^-2, 5.8 m^2·hm^-2, respectively. No regeneration and natural trees were found in Peripheral Zone and the Zone is totally occupied by exotic species where the Buffer Zone comprised of both natural and exotic trees. The Peripheral Zone belonged to younger and smaller trees whereas the Buffer Zone belonged to mixture of smaller, taller, younger and mature trees simultaneously. For the practicing of different agroforestry systems both Zones have lost their original characters of Sal forest.  相似文献   

Maternal anthropometry as a predictor of birth weight     

Nahar S  Mascie-Taylor CG  Begum HA 《Public health nutrition》2007,10(9):965-970

OBJECTIVE: To determine whether maternal anthropometry predicted birth weight, and if so, to identify which cut-offs provided the best prediction of low birth weight (LBW) in a field situation. DESIGN: Community-based longitudinal study. SETTING: A rural union of Bhaluka Upazila, Mymensingh, located 110 km north-west of Dhaka, the capital of Bangladesh. PARTICIPANTS: A total of 1104 normotensive, non-smoking pregnant women who attended community nutrition centres were studied from first presentation at the centre until delivery of their child. RESULTS: Most of the pregnant mothers were between 20 and 34 years of age. Over one-third of the women were nulliparous, while 12.8% were multiparous (parity >/= 4). Most (93%) mothers registered between the 3rd and 5th month of pregnancy. The frequency of LBW ( < 2500 g) was 17%. Polynomial regression analyses showed that the best predictors of birth weight (based on adjusted R2 values) were in general weight at registration and weight at month 9, with adjusted R2 ranging from 2.5% to nearly 20%. Sequential regression analyses with height and weight showed that there was a significant effect of height after removing the weight variables, and adjusted R2 increased in all analyses. Weight and height at registration month continued to be the best predictors of LBW. Sensitivity and specificity curves were drawn for each registration month, body mass index and different weight gain groups, and using different weight and height combinations. The results showed that, for registration month 3-5, a combination of weight ( 相似文献   

QTL analysis of morphological and developmental traits in the Ler × Cvi population of Arabidopsis thaliana   总被引：1，自引：0，他引：1  

Champa Kumari Bandaranayake  Rachil Koumproglou  Xiao Yu Wang  Timothy Wilkes  Michael John Kearsey 《Euphytica》2004,137(3):361-371

Drought frequently constrains production of wheat (Triticum aestivum L.), but development of tolerant cultivars is hampered by low heritability for drought tolerance and a lack of effective selection strategies. Our objective was to identify an optimum selection regime for wheat in drought-prone environments. Six-hundred entries derived from 10 crosses were developed by selection under continuous high moisture, alternating high with low moisture, alternating low with high moisture, and continuous low moisture conditions for five generations. The selections were evaluated in two low-yield, a medium-yield, and a high-yield environment in the Yaqui Valley, Sonora, Mexico. The mean performance of entries derived from a particular selection regime was dependant on the stress level of the evaluation environment. Lines developed and selected under continuous high moisture and continuous low-moisture regimes produced the highest mean yields in the low moisture evaluation environment. There was no relationship between continuous selection under either high yielding conditions or low yielding conditions and the mean performance of the resultant lines in their respective high and low yielding evaluation environments. The mean yield of lines selected using the alternating high/low moisture regime as well as the five highest yielding lines were superior in the HY environment, and had similar performance with other regimes under the low yielding evaluation environment. Our results indicate that alternating selection between high and low yielding environments is the most effective way to develop wheat germplasm adapted to environments where intermittent drought occurs. This revised version was published online in July 2006 with corrections to the Cover Date.  相似文献   

Kaurane-type diterpenoids from Chromoleana odorata, their X-ray diffraction studies and potent α-glucosidase inhibition of 16-kauren-19-oic acid     

Wafo P  Kamdem RS  Ali Z  Anjum S  Begum A  Oluyemisi OO  Khan SN  Ngadjui BT  Etoa XF  Choudhary MI 《Fitoterapia》2011,82(4):642-646

A new diterpenoid, 15-angeloyloxy-16,17-epoxy-19-kauronic acid (1), along with five known metabolites, 16-kauren-19-oic acid (2), 6′-hydroxy-2′,3′,4,4′-tetramethoxychalcone (3), isosakuranetin (4), acacetin (5), and kaempferide (6) was isolated from the organic extracts of the roots of Chromoleana odorata. Their structures were determined by spectroscopic evidences. The structures of 1 and 2 were further confirmed by single-crystal X-ray diffraction studies. Compound 2 exhibited significant α-glucosidase inhibitory and antibacterial activities against Escherichia coli and Bacillus subtilis.  相似文献   

Assessment of natural regeneration status and diversity of tree species in the biodiversity conservation areas of Northeastern Bangladesh     

Md. Habibur Rahman  Md. Abu Sayed Arfin Khan  Bishwajit Roy  Most. Jannatul Fardusi 《林业研究》2011,22(4):551-559

A study was conducted at two-biodiversity conservation areas of Northeastern Bangladesh (a part of Sylhet Forest Division) to assess the species composition, diversity and density of natural regeneration of tree species both indigenous and exotic species. Data were collected by stratified random quadrate method during January 2010 to July 2010. Totally 200 circular plots of 2 m×2 m in size had 5 different habitat types of plants namely; forest, roadside, homestead (surrounding forest dwellers house), fallow land and others (canals, streams and tea gardens side), which included a total of 55 regenerating species belonging to 28 families. Meliaceae is the dominant family and shows the highest family importance value (26.3), having six species, followed by Moraceae (24.24). Among the five habitat types, forest (43 species) possess the highest number of species, followed by roadside (23 species). Total 15 exotic species among 9 families and 40 indigenous species with 24 families were recorded. For exotic species, Tectona grandis possess the highest relative density (11.7%) and relative frequency (10.5%); Senna siamea had highest relative abundance (7.83%). In case of indigenous species, Chickrassia tabularis possess the highest relative density (4.23%) and relative frequency (4%); Dipterocarpus turbinatus had the highest relative abundance (3.92%). Tectona grandis (29.66) and Chickrassia tabularis (10.8) had the highest IVI for exotic and indigenous species respectively. Different diversity indices such as Shanon-Winner diversity index, species diversity index, species richness index, species evenness index, Simpson index and species dominance index, etc. were applied to quantify definite diversity. The regeneration of species associated with low levels of disturbance was in the exotic species. Study suggests that proper protection from human disturbances and scientific management of natural regeneration of two-study forests may lead a rich biodiversity site in the country.  相似文献   

Influence of phosphine on hatching of Cryptolestes ferrugineus (Coleoptera: Cucujidae), Lasioderma serricorne (Coleoptera: Anobiidae) and Oryzaephilus surinamensis (Coleoptera: Silvanidae)     

Rajendran S  Parveen H  Begum K  Chethana R 《Pest management science》2004,60(11):1114-1118

The hatching and mortality response of 0- to 48-h-old eggs of field strains of the stored-product insects Cryptolestes ferrugineus (Stephens), Lasioderma serricorne (F) and Oryzaephilus surinamensis (L) following phosphine fumigation for 24, 48 or 120 h at 27 (+/- 2) degrees C was investigated. Hatching was delayed and reduced in the first few days in a phosphine-resistant strain of C ferrugineus that was treated with 2.0-7.0 mg litre(-1) doses for 48 h (5-80% mortality) and with 1.0-2.0 mg litre(-1) for 120 h (44-84% mortality). In both the exposures there were significant increases in hatching on later days when compared with the corresponding controls. Developmental delay was, however, not evident in susceptible strains of C ferrugineus, L serricorne and O surinamensis that were exposed to phosphine for 24 h.  相似文献   

Effect of a rumen-protected conjugated linoleic acid mixture on hepatic lipid metabolism in heifers     

Shibani M  Schlegel G  Most E  Schwarz FJ  Ringseis R  Eder K 《Journal of animal physiology and animal nutrition》2012,96(3):527-534

This study was performed to assess the effects of rumen-protected conjugated linoleic acid (CLA) on hepatic lipid metabolism in heifers. In particular, it was of interest whether feeding CLA causes development of fatty liver as observed recently in mice. Thirty-six growing heifers with an initial body weight of 185 kg were allotted to three treatment groups and fed daily 250 g of different rumen-protected fats for 16 weeks: The control group received 250 g of a CLA-free control fat, the CLA100 group received 100 g of a CLA fat containing 2.4% of cis-9, trans-11 CLA and 2.1% of trans-10, cis-12 CLA and 150 g control fat and the CLA250 group received 250 g of the CLA fat. CLA supplementation had no effect on animal performance parameters, liver weight and hepatic triglyceride concentration. Moreover, mRNA expression of hepatic genes involved in lipogenesis, β-oxidation and fatty acid transport was not influenced by dietary CLA. The fatty acid composition of hepatic total lipids, with particular consideration of ratios of fatty acids indicative of Δ9-, Δ6- and Δ5-desaturation, was also less influenced by dietary CLA. In conclusion, the study shows that dietary rumen-protected CLA has less effect on hepatic lipid metabolism in young heifers and does not induce the development of a fatty liver such as in mice.  相似文献