A physical map of the 1-gigabase bread wheat chromosome 3B   总被引：2，自引：0，他引：2  

Paux E  Sourdille P  Salse J  Saintenac C  Choulet F  Leroy P  Korol A  Michalak M  Kianian S  Spielmeyer W  Lagudah E  Somers D  Kilian A  Alaux M  Vautrin S  Bergès H  Eversole K  Appels R  Safar J  Simkova H  Dolezel J  Bernard M  Feuillet C 《Science (New York, N.Y.)》2008,322(5898):101-104

As the staple food for 35% of the world's population, wheat is one of the most important crop species. To date, sequence-based tools to accelerate wheat improvement are lacking. As part of the international effort to sequence the 17-billion-base-pair hexaploid bread wheat genome (2n = 6x = 42 chromosomes), we constructed a bacterial artificial chromosome (BAC)-based integrated physical map of the largest chromosome, 3B, that alone is 995 megabases. A chromosome-specific BAC library was used to assemble 82% of the chromosome into 1036 contigs that were anchored with 1443 molecular markers, providing a major resource for genetic and genomic studies. This physical map establishes a template for the remaining wheat chromosomes and demonstrates the feasibility of constructing physical maps in large, complex, polyploid genomes with a chromosome-based approach.  相似文献   

Megaparks for metapopulations: Addressing the causes of locally high elephant numbers in southern Africa     

Rudi J. van Aarde  Tim P. Jackson 《Biological conservation》2007,134(3):289-297

Conservation management options for southern African elephants range from local to regional scales. Here we review these options and argue in favour of actions that will deal with the causes rather than symptoms of elephant numbers that are locally high. Metapopulation theory ensures population persistence, while our approach extends this in order to stabilise elephant numbers regionally. By allowing for the development and maintenance of regional sinks, we may also limit numbers in sources. This application of the metapopulation metaphor is a powerful ecological platform from which to manage elephant numbers and impact through southern Africa. Our approach engages the causes of the apparently high abundance of elephants in parts of southern Africa. It moves away from the practice of dealing only with numbers (symptoms) when managing the impact of elephants on other species. While providing an ecological basis for the development of elephant management options, this needs to be melded with social, political and economic realities through southern Africa. In this regard we are encouraged by the ongoing development of several Transfrontier Conservation programmes and Peace Parks across the region.  相似文献   

Classification of the parenchymal cells in Fasciola gigantica based on ultrastructure and their expression of fatty acid binding proteins (FABPs)     

Pankao V  Sirisriro A  Grams R  Vichasri-Grams S  Meepool A  Kangwanrangsan N  Wanichanon C  Ardseungneon P  Viyanant V  Upatham ES  Sobhon P 《Veterinary parasitology》2006,142(3-4):281-292

Parenchymal cells in adult Fasciola gigantica can be classified into three types based on their ultrastructural features and different quantities of fatty acid binding protein (FABP) being stored. Parenchymal cell type 1 (Pc1) has pale cytoplasm consisting largely of a loose network of fine fibers, and it contains few mitochondria but numerous glycogen particles. This cell type may be specialized in the storage and metabolism of glycogen and glucose. Parenchymal cell type 2 (Pc2) has similar cytoplasmic features as Pc1 but contains more numerous mitochondria, and high concentration of FABP as reflected by high density of immunostaining and immunogold labeling using specific monoclonal antibody (MoAb) to FABP as probe. Pc2 may, thus, specialize in the storage and metabolism of fatty acids and other lipids. Parenchymal cell type 3 (Pc3) has dense cytoplasm containing large amount of rough endoplasmic reticulum, Golgi complex and mitochondria, which is typical of a secretory cell. Furthermore, Pc3 has very little glycogen particles and is not stained by MoAb against FABP. It could, thus, be concerned with the synthesis of fibers, which form the scaffold of the parenchyma.  相似文献   

Matrix transformation alters species-area relationships in fragmented coastal forests     

Marc T. Freeman  Pieter I. Olivier  Rudi J. van Aarde 《Landscape Ecology》2018,33(2):307-322

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The fisheries livelihoods resilience check (FLIRES check): A tool for evaluating resilience in fisher communities          下载免费PDF全文

Richard J. Stanford  Budy Wiryawan  Dietriech G. Bengen  Rudi Febriamansyah  John Haluan 《Fish and Fisheries》2017,18(6):1011-1025

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Preparation and Characterization of Microcrystalline Cellulose from Sacred Bali Bamboo as Reinforcing Filler in Seaweed-based Composite Film     

H. P. S. Abdul Khalil  Tze Kiat Lai  Ying Ying Tye  M. T. Paridah  M. R. Nurul Fazita  A. A. Azniwati  Rudi Dungani  Samsul Rizal 《Fibers and Polymers》2018,19(2):423-434

Microcrystalline cellulose (MCC) isolated from cheap, fast-growing and abundant accessible Sacred Bali bamboo (Schizostachyum brachycladum) was utilized as reinforcement material in the seaweed-based composite film. Isolation of MCC was carried out by using a combination of pulping, bleaching and acid hydrolysis process. This study emphasized on the feasibility of MCC production from Sacred Bali bamboo by studying its properties using X-ray diffraction (XRD), scanning electron microscopy (SEM), fourier transform infrared spectroscopy (FTIR) and thermogravimetric analysis (TGA). The commercial-MCC (CMCC) was used as reference material. Results showed that the production yield, moisture content (MC) and fiber length of bamboo-MCC (BMCC) were 83.37±1.48 %, 4.50±0.5 %, and 0.47±0.02 mm, respectively. According to the chemical analysis by FTIR, both lignin and hemicellulose were completely removed from BMCC, and thus, improved the crystallinity (78 %) and thermal stability (≈325 °C) of BMCC. This study also revealed that MCC produced from Sacred Bali bamboo demonstrated strong mechanical reinforcement effect in the seaweed-based film. Hence, Sacred Bali bamboo-MCC could be used as reinforcement material in the polymer.  相似文献   

Vernalization gene combination to maximize grain yield in bread wheat (Triticum aestivum L.) in diverse environments     

Jingjuan Zhang  Bernard Dell  Ben Biddulph  Nusrat Khan  Yunji Xu  Hao Luo  Rudi Appels 《Euphytica》2014,198(3):439-454

The major vernalisation genes of VRN1 are well understood at the molecular level. However, their quantitative contributions to flowering time and grain yield related traits are not clear. In this study, we used a double haploid population (225 lines) of Westonia × Kauz in which the Vrn-A1a (Westonia), Vrn-B1a (Westonia) and Vrn-D1a (Kauz) were segregating, and a high resolution genetic map of 1,159 loci, to determine the quantitative contributions of Vrn-A1a, Vrn-B1a and Vrn-D1a for the days to anthesis and grain yield related traits in diverse environments. The major quantitative trait loci (QTL) of spikelet number per spike and days to anthesis were contributed by the winter alleles of VRN1. The QTL of the time of grain filling were contributed by the spring alleles of VRN1. The wild genotype (vrn-A1vrn-B1vrn-D1) showed the latest flowering, the highest spikelet number per spike, lowest peduncle proportion and thousand grain weight in three environmental analyses, and the largest spikelet number per spike, which resulted in high kernel number per spike (KN) and grain weight (GW) in well-watered environments. One QTL of KN was located on 5B, contributed by winter allele of vrn-B1 in three environmental analyses, and one GW QTL was detected on 5A, contributed by the spring allele of Vrn-A1a in a drought environment. The results indicated that the genotype Vrn-A1avrn-B1Vrn-D1a would shorten the time to anthesis and give high GW and KN in drought environments. The early anthesis associated phenotype, peduncle proportion would provide an indicator in breeding programs.  相似文献   

Elephant seasonal vegetation preferences across dry and wet savannas     

Scott R. Loarie  Rudi J. van Aarde 《Biological conservation》2009,142(12):3099-17920

As African savanna elephants (Loxodonta africana) become increasingly confined to smaller fragmented landscapes, concern over their potential detrimental impacts on vegetation and biodiversity has increased. Understanding elephant vegetation preferences across relevant spatial and temporal scales is a critical step towards managing protected areas for the persistence of both elephants and biodiversity. To better understand elephant vegetation selection, we fitted 68 elephants with GPS collars across a strong rainfall gradient spanning seven southern African countries over a period of 6 years. We compared elephant locations with remotely-sensed environmental data that measure bi-monthly vegetation greenness across the study area. Elephants consistently seek out greener than expected vegetation throughout the year. Interestingly, they do so by utilizing vegetation with different phenologies and by selecting landscapes when they are greener than their surroundings. We found no differences between dry and wet savannas. These patterns persist even when elephants are constrained by seasonally available water. In the wet season, elephants select seasonally variable landscapes such as open woodlands, shrublands, and grasslands. These landscapes have a lower average annual greenness but become very green for a few months in the wet season. In the dry season, elephants prefer less variable landscapes that are more consistently green year-round such as well-wooded areas and closed woodlands. Because elephants prefer different vegetation types at different times of the year, small homogeneous protected areas may be unsuitable for elephants. Since elephants prefer woody vegetation during the dry season when they are constrained by water, human actions that increase dry season water availability may contribute to detrimental elephant impacts on vegetation and biodiversity.  相似文献   

The Influence of a Particle Separation Technology on the Generation of Airborne Particles from Different Roughages and Bedding Materials Used for Horses     

Felix Garlipp  MSc  Engel F. Hessel  Matthieu van den HurkMark F. Timmerman  Dr.  Herman F.A. Van den Weghe 《Journal of Equine Veterinary Science》2010

Four different types of bedding materials (wheat straw, wood shavings, hemp shives, flax shives) and two roughages (hay, haylage) were treated using an air-driven particle separation technology. The airborne particle and mold generation of both treated and untreated samples were then analyzed under standardized laboratory conditions. In addition, samples of all the treated materials were stored for 8 weeks either in a pressed or incoherent form and then analyzed again for their ability to generate airborne particles. The airborne particle concentrations were detected online with the gravimetrically measuring analyzer tapered element oscillating microbalance (TEOM) 1400a that was equipped successively with different inlets to measure the particle fractions PM₂₀, PM₁₀, PM_2.5, and PM_1.0 (PM = Particulate matter). The particle separation resulted in a reduction in the airborne particle (PM₂₀) generation in all materials: hay 49.16 to 22.79 mg/m³ (53.6%), haylage 28.57 to 25.04 mg/m³ (12.3%), wood shavings 141.68 to 15.04 mg/m³ (89.4%), wheat straw 143.08 to 22.97 mg/m³ (83.9%), flax 135.11 to 53.31 mg/m³ (60.5%), and hemp 63.67 to 17.64 mg/m³ (72.3%). The 8-week storage of the treated materials as compressed materials led to a renewed significant increase in the airborne particle (PM₁₀) concentration in the haylage (+29.9%), wheat straw (+104.0%), wood shavings (+40.4%), and hemp shives (+30.7%). Storage of the incoherent materials caused a significant increase in these particles only in the wheat straw (+44.2%). The separation treatment reduced the mold production by 92.4% in the wood shavings, 88.0% in the wheat straw, and 85.8% in the hay.  相似文献   

Reduction of (E)-2-nonenal and (E,E)-2,4-decadienal during sourdough fermentation     

Nicoline Vermeulen  Michael Czerny  Michael G. Gänzle  Peter Schieberle  Rudi F. Vogel 《Journal of Cereal Science》2007

(E)-2-Nonenal and (E,E)-2,4-decadienal are key aroma compounds in wheat bread crumb. The fate of these unsaturated aldehydes in sourdoughs fermented with homo- and heterofermentative lactobacilli or baker's yeast was investigated, and the metabolic pathways in these microorganisms identified. Clear differences were observed between homofermentative lactobacilli, heterofermentative lactobacilli and Saccharomyces cerevisiae. Heterofermentative strains rapidly reduced the concentrations of these aldehydes in dough, whereas S. cerevisiae displayed a lower activity. Lactobacillus sanfranciscensis reduced the aldehydes to the corresponding unsaturated alcohols, whereas S. cerevisiae reduced both the aldehyde moiety and the double bond, resulting in the formation of the corresponding saturated alcohols. S. cerevisiae first reduced the aldehyde moiety and then the double bond. In L. sanfranciscensis, the reduction of aldehydes is coupled to the oxidation of NADH to NAD⁺, which enables this heterofermentative strain to produce additional ATP from glucose. L. sakei, a strain that produces only lactic acid during sourdough fermentation, did not metabolise the unsaturated aldehydes at all. Both L. sakei and S. cerevisiae appeared to enhance aldehyde formation during the first hours of dough fermentation, probably due to the hydrogen peroxide production by these two strains.  相似文献