Monitoring of genetic diversity in the Japanese Black cattle population by the use of pedigree information     

T. Honda  T. Nomura  Y. Yamaguchi  F. Mukai 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2004,121(4):242-252

The gene pool of the Japanese Black cattle has been completely closed to foreign breeds during the last 100 years. Genetic diversity of the Japanese Black cattle from 1960 to 2000 was monitored with three estimates of effective number of ancestors. Founder genome equivalent (N_ge) accounts for all the causes of reduction of diversity. Effective number of founders (N_ef) and non‐founders (N_enf) explain reduced diversity because of unequal genetic contributions of founders and random genetic drift in non‐founders, respectively. Further examination using gene dropping simulation was conducted to obtain information on survival of founder alleles. Unique founder alleles were dropped down along the actual pedigree with Monte Carlo procedure following Mendelian segregation rules, and generated genotypes of all the current live animals (612 959 heads). Pedigree records consisted of 2 075 188 animals was used for these analysis. The estimates of three effective numbers (N_ef, N_ge, and N_enf) decreased from 418.6 to 50.3, 86.6 to 7.3, and 109.2 to 8.5, respectively, during the period 1960–2000. The increasing differences between two kinds of genetic diversity indices derived from N_ge and N_ef showed that large part of the reduced diversity from 1980 was attributed to genetic drift caused by the intensive use of particular limited number of sires. In gene dropping analysis, probabilities of extinction of founder alleles were derived from their distributions of frequency in the current animals. Several founders showed low probabilities of allele extinction, irrespective of their relatively low genetic contributions. This suggests that these founders have lineages through which their alleles are surely transmitted to the current breed. The use of these founders as a strategy for recovering the genetic diversity was discussed.  相似文献   

Phylogenetic analysis of Myanmar indigenous chickens using mitochondrial D-loop sequence reveals their characteristics as a genetic resource     

Su Lai Yee Mon  Moe Lwin  Aye Aye Maw  Lat Lat Htun  Saw Bawm  Kotaro Kawabe  Yasuhiko Wada  Shin Okamoto  Takeshi Shimogiri 《Animal Science Journal》2021,92(1):e13647

Myanmar indigenous chickens play important roles in food, entertainment, and farm business for the people of Myanmar. In this study, complete mitochondrial D-loop sequences (1232 bp) were analyzed using 176 chickens, including three indigenous breeds, two fighting cock populations, and three indigenous populations to elucidate genetic diversity and accomplish a phylogenetic analysis of Myanmar indigenous chickens. The average haplotype and nucleotide diversities were 0.948 ± 0.009 and 0.00814 ± 0.00024, respectively, exhibiting high genetic diversity of Myanmar indigenous chickens. Sixty-four haplotypes were classified as seven haplogroups, with the majority being haplogroup F. The breeds and populations except Inbinwa had multiple maternal haplogroups, suggesting that they experienced no recent purifying selection and bottleneck events. All breeds and populations examined shared haplogroup F. When 232 sequences belonging to haplogroup F (79 from Myanmar and 153 deposited sequences from other Asian countries/region) were analyzed together, the highest genetic diversity was observed in Myanmar indigenous chickens. Furthermore, Myanmar indigenous chickens and red junglefowls were observed in the center of the star-like median-joining network of 37 F-haplotypes, suggesting that Myanmar is one of the origins of haplogroup F. These findings revealed the unique genetic characteristic of Myanmar indigenous chickens as important genetic resources.  相似文献   

Lactobacillus rhamnosus GG SpaC pilin subunit binds to the carbohydrate moieties of intestinal glycoconjugates          下载免费PDF全文

Keita Nishiyama  Shintaro Ueno  Makoto Sugiyama  Yuji Yamamoto  Takao Mukai 《Animal Science Journal》2016,87(6):809-815

Lactobacillus rhamnosus GG (LGG) is a well‐established probiotic strain. The beneficial properties of this strain are partially dependent on its prolonged residence in the gastrointestinal tract, and are likely influenced by its adhesion to the intestinal mucosa. The pilin SpaC subunit, located within the Spa pili structure, is the most well studied LGG adhesion factor. However, the binding epitopes of SpaC remain largely unknown. The aim of this study was to evaluate the binding properties of SpaC to the carbohydrate moieties of intestinal glycoconjugates using a recombinant SpaC protein. In a competitive enzyme‐linked immunosorbent assay, SpaC binding was markedly reduced by addition of purified mucin and the mucin oligosaccharide fraction. Histochemical staining revealed that the binding of SpaC was drastically reduced by periodic acid treatment. Moreover, in the surface plasmon resonance‐based Biacore assay, SpaC bound strongly to the carbohydrate moieties containing β‐galactoside at the non‐reducing terminus of glycolipids. We here provide the first demonstration that SpaC binds to the oligosaccharide chains of mucins, and that the carbohydrate moieties containing β‐galactoside at the non‐reducing termini of glycoconjugates play a crucial role in this binding. Our results demonstrate the importance of carbohydrates of SpaC for mucus interactions.  相似文献   

Evaluation of an indirect enzyme-linked immunosorbent assay (ELISA) using recombinant toxin for detection of antibodies against Pasteurella multocida toxin   总被引：1，自引：0，他引：1  

Takada-Iwao A  Uto T  Mukai T  Okada M  Futo S  Shibata I 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2007,69(6):581-586

To facilitate the control of progressive atrophic rhinitis (PAR) of swine caused by toxigenic Pasteurella multocida, an enzyme-linked immunosorbent assay (ELISA) and a serum neutralization test (NT) have recently been developed to detect antibodies against the P. multocida dermonecrotic toxin (PmDNT). However, the NT is a cumbersome and time-consuming technique. To overcome these drawbacks, we developed an indirect ELISA, using recombinant PmDNT expressed in Escherichia coli, for the detection of antibodies to PmDNT in serum samples from pigs. The practical usefulness of this ELISA was compared with the NT using serum samples obtained from experimentally infected and naturally infected pigs. In the pigs experimentally inoculated with vaccine including PmDNT toxoid, the ELISA and neutralization antibodies were detected at almost the same time, and a good correlation was demonstrated between both tests (P<0.01, R(2)=0.807). Therefore, the ELISA can be used to evaluate the immune reaction of pigs after vaccination with P. multocida toxoid. In a survey conducted on a field herd with a history of clinical AR, the seropositivity by ELISA in pigs of age 4.5-6 months was increased even though the NT was negative, and the correlation was low between the results obtained with the two tests (P<0.01, R(2)=0.38). Therefore, the results indicated that this ELISA might be a useful alternative to the NT currently used to detect the antibody to PmDNT after vaccination or infection with P. multocida.  相似文献   

Vulnerability of feline T-lymphocytes to charged particles     

Kakizaki T  Hamada N  Sakashita T  Wada S  Hara T  Funayama T  Hohdatsu T  Natsuhori M  Sano T  Kobayashi Y  Ito N 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2007,69(6):605-609

An analysis of ionizing radiation-induced damage in peripheral lymphocytes has been employed to predict the prognosis of radiotherapy in terms of toxicity in normal tissues. Therefore, understanding the sensitivity of lymphocytes to high linear energy transfer (LET)-charged particles would be indispensable for utilizing charged particle therapy in veterinary medicine. However, the availability of such information is very limited. This study aimed to compare the radiosensitivity of feline T lymphocytes to gamma-rays (0.2 keV/microm) and 4 different types of charged particles with LET values ranging from 2.8 to 114 keV/microm. It was observed that the relative biological effectiveness, inactivation cross-section, and isodose-induced apoptosis increased in an LET-dependent manner. On the other hand, no difference in apoptosis frequency was observed in the cells exposed to an isosurvival dose of all the radiation types tested. This is the first study that demonstrates the LET dependence of cell killing and apoptosis induction in feline T lymphocytes. Our results suggest that lymphocytes can be effectively used to predict the prognosis of charged-particle therapy in cat patients.  相似文献   

Inbreeding and effective population size of Japanese Black cattle     

Nomura T  Honda T  Mukai F 《Journal of animal science》2001,79(2):366-370

The objective of this research was to estimate the amount of inbreeding and effective population size of the Japanese Black breed using pedigree records from bulls and heifers registered between 1985 and 1997. Inbreeding was quantified by three F-statistics: actual inbreeding, inbreeding expected under random mating, and inbreeding due to population subdivision. During the period of 1985 to 1997, the inbreeding expected under random mating increased from 2.3% to 5.0%, whereas the increase of actual inbreeding was more gradual (from 4.7% to 5.4%). The inbreeding due to population subdivision decreased almost linearly and reached 0.5% in 1997, indicating that genetic subdivision of the Japanese Black cattle population has essentially disappeared. The effective size of the breed was estimated from the increasing rate of inbreeding expected under random mating. In the earlier half of this period (1986 to 1990), the breed maintained an effective size of approximately 30. However, after 1991 the effective size sharply decreased and the harmonic mean between 1993 and 1997 was only 17.2. The main cause of this reduction of the effective size was considered to be the intensive use of a few prominent sires. To increase the effective size, an upper limit in the use of AI semen per sire should be imposed.  相似文献   

Soft X-ray observation of water distribution in the stem ofCryptomeria japonica D. Don II: Types found in wet-area distribution patterns in transverse sections of the stem     

Ryogo Nakada  Yoshitake Fujisawa  Yasuhiko Hirakawa 《Journal of Wood Science》1999,45(3):194-199

Using soft X-ray photography, two-dimensional observations were made of the water distribution within the green stem ofCryptomeria japonica D. Don. Variations in the distribution pattern of the wet area in the horizontal plane of the lower stem were described. The distribution patterns showed extreme variation among individual trees, with broad wet-area distribution types appearing, namely, the regularly distributed wet area and the irregularly distributed wet area. We defined five basic types of wet-area distribution patterns on the basis of their regularity or irregularity. It was concluded that the between-tree variation in the wet-area distribution causes the between-tree variation in the mean moisture content of the heartwood. The distribution patterns of the wet area were similar for individual trees within each plus-tree clone.Part of this paper was presented at 46th annual meeting of the Japan Wood Research Society at Kumamoto, April 1996  相似文献   

Pilot Study to Examine Radial Variation in Annual Ring Width, Density and Shrinkage     

URAKAMI Hiroyuki  HIRAKAWA Yasuhiko  YAMASHITA Kana 《中国林业科技(英文版)》2003,(4)

The annual ring width, density and shrinkage variation from pith to bark in Chinese fir (Cunninghamia lanceolata) and Boka sugi (Cryptomeria japonicd) were studied and compared. The results show that the ring width decreased sharply from pith to bark for Chinese fir. However, the ring width variation pattern for Boka sugi followed a different way, i.e., the ring width decreased to the fifth ring, increased to the tenth ring, decreased again to the fifteenth, and then increased to the twentieth, where it became constant. The large variations of Boka sugi appeared to show the maintenance of fast growth for many years. The annual ring mean density of Chinese fir increased gradually from pith to bark. However, the density changes for Boka sugi indicated the opposite trend, i.e., the mean density decreased gradually from pith to bark. The former showed a pattern as the same as a pine and a larch, and the latter was often found in a cedar and a cypress. The longitudinal shrinkage in juvenile wood was much hig  相似文献   

Influence of phosphate-buffered sucrose solution on early graft function in feline renal autotransplantation     

Masaaki Katayama  Yasuhiko Okamura  Shunsuke Shimamura  Rieko Katayama  Hiroaki Kamishina  Yuji Uzuka 《Research in veterinary science》2014

Graft perfusion with cold heparinized saline has known to induce ischemia and reperfusion injury in feline kidney transplantation. In this study, the effects of phosphate-buffered sucrose solution and heparinized saline solution on early kidney graft function were compared in feline kidney autotransplantation. Perfusion of grafts with or without hypothermic storage with chilled phosphate-buffered sucrose solution prevented ischemia and reperfusion injury despite a very short ischemic time. The results of our study suggest that phosphate-buffered sucrose perfusion and storage solution should be effective to reduce ischemia and reperfusion injury despite a very short ischemic time in feline kidney transplantation.  相似文献   

Functions of Chisan dams in large-scale granular mass-flow experiments on Sakurajima volcano pumiceous clasts     

Yasuhiko Okada 《Journal of Forest Research》2014,19(6):493-500

We investigated the fundamental behaviour of Chisan (check) dams in response to the presence or absence of impounded sediment with different levels of saturation. Large-scale model flume experiments were conducted by use of a model Chisan dam that had been backfilled with pumiceous clasts taken from the Sakurajima volcano in Kagoshima prefecture, Japan. In these experiments, the miniature dam was situated midway down the flume under different backfill sediment conditions and the basal pore-fluid pressure, normal flow depth, and impact load of the granular mass were carefully monitored. Saturated sediment with a volume of 0.6 m³ was released along the slope of the flume segment at 30° and excess pore-fluid pressure was generated, corresponding to a sediment velocity of approximately 4.8 m s^?1. Direct collision of the sediment with the Chisan dam meant the peak impact loads of granular mass against the back surface of the dam exceeded 157 N in experiments without backfill sediment but were as low as 32.1 N in experiments with sediment. Accordingly, placing the backfill sediment substantially reduced peak impact loads. The sediment captured by the Chisan dams was also calculated. For experiments using saturated backfill sediment, the dam captured only 35 % of the material, indicating that most of the granular mass passed over the dam. However, in experiments without backfill sediment or with unsaturated backfill sediment, over 90 % was captured. Although Chisan dams with unsaturated backfill sediment lacked pocket space, almost equivalent granular masses were trapped in these experiments. On the basis of these results, we suggest that Chisan dams with unsaturated backfill sediment could effectively counter debris flow, reducing sediment loads along the streams draining Sakurajima volcano.  相似文献