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In this paper, genetic diversity of intraspecies, and genetic relationship of interspecies in Epinephelus spp. (E. merra, E. fario, E. awoara, E. akaara and E. septemfasciatus) were assessed by using mitochondrial DNA restriction fragment length polymorphisms (mtDNA RFLPs).The samples were collected from the coastal area of Zhanjiang,Guangdong province. MtDNA was extracted from the fresh liver tissue by applying a difference centrifugation procedures. Using 17 restriction enzymes with 5-or 6-bp recognition sites, the purified mtDNA was cleaved by single enzymes. These enzymes included BamH Ⅰ，Bgl Ⅰ，Bgl Ⅱ，Dra Ⅰ，EcoR Ⅰ，EcoR Ⅴ，Hind Ⅲ，Kpn Ⅰ，Mlu Ⅰ，Pst Ⅰ，Pvu Ⅱ，Sal Ⅰ，Sca Ⅰ，Sma Ⅰ，Sty Ⅰ，Xba Ⅰ and Xho Ⅰ. The phylogenetic analysis was done using the Neighbor joining(NJ) method and Unweighted pairgroup method with arithmetic mean(UPGMA) method. Genetic diversity indices such as haplotype diversity (h), average genetic distance between haplotypes (P) and nucleotide diversity (π) were calculated using Nei and Li's segment method to quantify the genetic diversity within species. There were 8, 5, 8, 5 and 2 haplotypes detected within E. merra, E. fario, E.awoara, E.akaara and E. septemfasciatus, respectively. The haplotype diversity (h) was 0.8943, 0.6186, 0.9242, 0.6927 and 0.1820,respectively. The average genetic distance between haplotypes (P) was 0.62%±0.31%, 0.64%±0.37%, 1.12%±0.55%,0.72%±0.42% and 0.45%, respectively. And the nucleotide diversity (π) was 0.22%, 0.13%, 0.46%, 0.17% and 0.04%, respectively. The wild groupers in the Zhanjiang Coastal Area exhibited a relative higher level of genetic diversity. The net genetic distance between species (Pnet) was 0.0694（E. merra - E. fario）,0.1337（E. merra - E. awoara）,0.1090 E. merra -E. akaara）, 0.1286（E. merra - E. septemfasciatus）,0.1590（E. fario -E. awoara）,0.0825（E. fario -E. akaara）,0.1153（E. fario - E. septemfasciatus）,0.1131 E. awoara - E. akaara）,0.0724（E. awoara -E. septemfasciatus） and 0.1336（E. akaara - E. septemfasciatus）. Both NJ and UPGMA methods yielded an identical phylogenetic tree for the five species. The E. merra and E. fario first clustered together, then joined with E. akaara, and finally clustered with E. awoara and E. septemfasciatus. 相似文献
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用识别5、6碱基序列的17种限制性内切酶,即BamHⅠ、BglⅠ、BglⅡ、DraⅠ、EcoRⅠ、EcoRⅤ、HindⅢ、KpnⅠ、MluⅠ、PstⅠ、PvuⅡ、SalⅠ、ScaⅠ、SmaⅠ、StyⅠ、XbaⅠ和XhoⅠ,对南海海域石斑鱼属(EpinephelusBloch)野生蜂巢石斑鱼(E.merra)、鲑点石斑鱼(E.fario)、青石斑鱼(E.awoara)、赤点石斑鱼(E.akaara)和七带石斑鱼(E.septem-fasciatus)的线粒体DNA(mtDNA)进行RFLP分析。测算出蜂巢石斑鱼、鲑点石斑鱼、青石斑鱼、赤点石斑鱼和七带石斑鱼的mtDNA分子大小分别为(18.52±0.21)kb、(18.44±0.21)kb(、18.56±0.18)kb、(18.57±0.19)kb和(18.36±0.11)kb。通过单、双酶切分析,分别构建了蜂巢石斑鱼10种酶共20个酶切位点、鲑点石斑鱼9种酶共17个酶切位点、青石斑鱼8种酶共16个酶切位点、赤点石斑鱼7种酶共12个酶切位点和七带石斑鱼7种酶共13个酶切位点的酶切物理图谱。BglⅡ和XhoⅠ两种内切酶的酶切谱带可作为鉴别这5种石斑鱼的RFLP标记。 相似文献
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