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1.
Bendall SC Simonds EF Qiu P Amir el-AD Krutzik PO Finck R Bruggner RV Melamed R Trejo A Ornatsky OI Balderas RS Plevritis SK Sachs K Pe'er D Tanner SD Nolan GP 《Science (New York, N.Y.)》2011,332(6030):687-696
Flow cytometry is an essential tool for dissecting the functional complexity of hematopoiesis. We used single-cell "mass cytometry" to examine healthy human bone marrow, measuring 34 parameters simultaneously in single cells (binding of 31 antibodies, viability, DNA content, and relative cell size). The signaling behavior of cell subsets spanning a defined hematopoietic hierarchy was monitored with 18 simultaneous markers of functional signaling states perturbed by a set of ex vivo stimuli and inhibitors. The data set allowed for an algorithmically driven assembly of related cell types defined by surface antigen expression, providing a superimposable map of cell signaling responses in combination with drug inhibition. Visualized in this manner, the analysis revealed previously unappreciated instances of both precise signaling responses that were bounded within conventionally defined cell subsets and more continuous phosphorylation responses that crossed cell population boundaries in unexpected manners yet tracked closely with cellular phenotype. Collectively, such single-cell analyses provide system-wide views of immune signaling in healthy human hematopoiesis, against which drug action and disease can be compared for mechanistic studies and pharmacologic intervention. 相似文献
2.
Olivier M Aggarwal A Allen J Almendras AA Bajorek ES Beasley EM Brady SD Bushard JM Bustos VI Chu A Chung TR De Witte A Denys ME Dominguez R Fang NY Foster BD Freudenberg RW Hadley D Hamilton LR Jeffrey TJ Kelly L Lazzeroni L Levy MR Lewis SC Liu X Lopez FJ Louie B Marquis JP Martinez RA Matsuura MK Misherghi NS Norton JA Olshen A Perkins SM Perou AJ Piercy C Piercy M Qin F Reif T Sheppard K Shokoohi V Smick GA Sun WL Stewart EA Fernando J Tejeda Tran NM Trejo T Vo NT Yan SC Zierten DL Zhao S 《Science (New York, N.Y.)》2001,291(5507):1298-1302
We have constructed a physical map of the human genome by using a panel of 90 whole-genome radiation hybrids (the TNG panel) in conjunction with 40,322 sequence-tagged sites (STSs) derived from random genomic sequences as well as expressed sequences. Of 36,678 STSs on the TNG radiation hybrid map, only 3604 (9.8%) were absent from the unassembled draft sequence of the human genome. Of 20,030 STSs ordered on the TNG map as well as the assembled human genome draft sequence and the Celera assembled human genome sequence, 36% of the STSs had a discrepant order between the working draft sequence and the Celera sequence. The TNG map order was identical to one of the two sequence orders in 60% of these discrepant cases. 相似文献
3.
David Martínez Moreno Juan Núñez-Farfán Teresa Terrazas Ruiz P Lucero del Mar Antonio Trinidad-Santos Trejo L Carlos Alfonso Larque-Saavedra 《Genetic Resources and Crop Evolution》1999,46(3):225-234
This study investigates the plastic responses after shoot removal of Amaranthus cruentus L. and A. hypochondriacus L. This practice is common in the Sierra Norte de Puebla, Mexico, where both species are cultivated and used as a food source during the vegetative stage. Empirical observations indicate that biomass increases in clipped plants. The experimental study carried out on both species of Amaranthus imitated local farm management. Three levels of shoot removal were applied to plants of both species: Control, 10% and 40%. In A. cruentus plants with 10% of the shoot removed produced more stalk biomass, more leaves, greater leaf area, greater length of primary branches and a larger number of secondary branches than the control plants. In A. hypochondriacus, there were no differences among levels of shoot removal in stem biomass; in general, the number of primary and secondary branches in control plants was greater than that in clipped plants. Patterns of biomass allocation revealed important differences between species, as clipped plants allocated more biomass to seeds in A. cruentus, while control plants allocated more to leaves in A. hypochondriacus. Furthermore, changes in response at the primary branch (secondary branches, leaf biomass, and area) level were observed between species. In general, clipped plants of A. cruentus overcompensate for the damage, while this response was not evident in clipped plants of A. hypochondriacus. Instead, this species showed high tolerance to damage. The phenotypically plastic responses expressed for both species can be used as a guide to improve management of these plants by local farmers from the Sierra. 相似文献
4.
Cytogenetic characterization by karyotyping and determination of DNA content by flow cytometry of seven cultivated varieties
of Chenopodium was performed. Chenopodium quinoa cultivar Barandales and C. berlandieri subsp. nuttalliae cultigens Huauzontle, Quelite and Chia roja showed 2n = 4x = 36, x = 9. Statistically insignificant genome size differences for studied varieties ranged from 2.96 pg/2C (1 Cx = 724 Mbp) in C. quinoa to 3.04 pg/2C (1 Cx = 743 Mbp) in Huauzontle. Karyotype analyses revealed the presence of nine groups of four metacentric chromosomes, including
two pairs of chromosomes with satellites. The first pair of satellites was located on the largest pair of chromosomes and
the second on a different pair of chromosomes in all accessions analyzed. Variation among varieties was evident in chromosome
size, genome length (GL) and the position of satellites. Chia roja exhibited greatest GL (58.82 μm) and biggest chromosomes
(2.04 μm). Huauzontle showed the smallest GL (45.02 μm) and shortest chromosomes (1.60 μm). Comparison of GL in studied taxa
was statistically significant and allowed to define three groups according to the use given to these plants. These data indicate
that they are small, very stable genomes in terms of DNA content, and they support the allotetraploid origin(s) of C. berlandieri subsp. nuttalliae and C. quinoa. 相似文献
5.
Replacement of fishmeal by soya protein concentrate in the diets of Totoaba macdonaldi (Gilbert, 1890) juveniles: effect on the growth performance,in vitro digestibility,digestive enzymes and the haematological and biochemistry parameters 
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下载免费PDF全文 Idaly Trejo‐Escamilla Mario A Galaviz Maricela Flores‐Ibarra Carlos A Álvarez González Lus M López 《Aquaculture Research》2017,48(8):4038-4057
The potential of soya protein concentrate (SPC) as an alternative protein source in diets for Totoaba macdonaldi juveniles was evaluated. Seven isonitrogenous and isolipidic diets were formulated containing 15–100% SPC (SPC15, SPC30, SPC45, SPC60, SPC75, SPC90 and SPC100) to replace fishmeal (FM‐protein), and a FM‐protein‐based diet without SPC was used as a reference diet (RD). Each diet was randomly assigned to triplicate groups of 20 totoaba (50 ± 1.0 g) and was fed twice daily to apparent satiation. After 60 days of experiment, effects on totoaba were evaluated. Growth performance in fish fed RD to SPC45 was similar. The maximum FM‐protein replacement for weight gain (g kg ABW?1 day?1) was estimated to be 34.17% using a broken‐line model. In vitro digestibility of fish fed RD, SPC15 and SPC30 was similar. Trypsin activity was higher in fish fed the RD (9.38 ± 0.52 mU × 10?3 mg protein?1. Chymotrypsin activity was similar in fish fed RD, SPC15 and SPC30. Activity of alkaline protease and phosphatase was similar in fish fed RD, SPC15 and SPC30. Red blood cells (RBC) were the highest in fish fed RD to SPC60. Fish fed the RD, SPC15 and SPC30 present the highest haematocrit (HT) and haemoglobin (HB) content. Diets SPC90 and SPC100 presented similar MCV and MCHC. Total protein (TP) profile overall decreased in fish fed SPC90 and SPC100, pointing to nutritional hypoproteinemia due to deficient digestion and absorption. These results indicate that SPC‐based diets could be used efficiently by totoaba with FM‐protein replacement of less than 45%. 相似文献
6.
Evenor Martínez Miguel Aguilar Limber Trejo Isaac Hernández Eugenio Díaz-Iglesia Luis A. Soto Adolfo Sanchez Carlos Rosas 《Journal of the World Aquaculture Society》1998,29(2):221-229
Abstract This study was undertaken to determine the effect of salinity and pH on tolerance to low dissolved oxygen concentration in postlarval (PL 12; 18 mg wet weight) and early juvenile (720 mg wet weight) Peneaus setiferus . Lethal levels of dissolved oxygen were determined in animals at four combinations of salinity and pH (36 and 15 ppt salinity and pH 6 and 8). For postlarvae, the 48-h LC50 for dissolved oxygen was 1.27 mgO2 /L at 15 ppt and pH8, and was significantly lower than that obtained in the other combinations of salinity and pH (P < 0.05). For juveniles, the 72-h LC50 was 1.16 mg1L at 15 ppt and pH 8, and was significantly lower than that obtained in the other combinations of salinity and pH (P < 0.05). A significant interaction between salinity and pH was observed. These results suggest that the intensive culture of P. setiferus may be conducted at moderate salinity, where shrimp appear to be more tolerant of low concentrations of oxygen than at higher salinities. 相似文献
7.
Blanca R. Lopez Yoav Bashan Adan Trejo Luz E. de-Bashan 《Biology and Fertility of Soils》2013,49(8):1053-1063
The main goal of this study was to expand our knowledge of what happens to the soil bacterial community in an eroded desert soil when improvement of soil fertility is derived from the application of debris of tertiary wastewater treatment containing immobilized microalgae Chlorella sorokiniana and the plant growth-promoting bacterium (PGPB) Azospirillum brasilense. We hypothesized that an “improved” non-agricultural desert soil will exhibit substantial changes in the structure of the bacterial community in a relatively short time after amendment. To assess the effect of the amendments, microalgae and PGPB alone or combined, on the structure of the rhizosphere bacterial community, changes in species richness and bacterial diversity over time were based on sequence differences in the 16S rRNA gene, performed with PCR–denaturing gradient gel electrophoresis (DGGE) and then analyzed by similarity test and non-metric multidimensional scaling analysis. Root surface colonization and persistence in the rhizosphere of A. brasilense was monitored by fluorescent in situ hybridization and sequencing of DGGE bands. Application of waste debris significantly changed the rhizosphere bacterial population structure, whether comparisons were made over time, between inoculated and non-inoculated soil, and among different inoculated microorganisms. Species richness and diversity increased when the waste debris contained the microalgae–bacteria association and also over time. Even as its secondary role as an inoculant after wastewater treatment, A. brasilense colonized the root surface profusely and persisted within the rhizosphere bacterial community. This study demonstrated that small organic amendment to desert soil significantly changed soil bacterial community compared to the original soil and also 2 months after amendments were added. 相似文献
8.
Evaluation of carbohydrate‐to‐lipid ratio in diets supplemented with Bacillus subtilis probiotic strain on growth performance,body composition and digestibility in juvenile white seabass (Atractoscion nobilis,Ayres 1860) 下载免费PDF全文
下载免费PDF全文 Lus M López Jorge Olmos Soto Idaly Trejo Escamilla Maricela Flores Ibarra Leonel Ochoa Mark Drawbridge Helena Peres 《Aquaculture Research》2016,47(6):1864-1873
This study aimed to evaluate the effect of increasing the carbohydrate to lipid ratio in diets supplemented with Bacillus subtilis in white seabass (Atractoscion nobilis) juveniles on digestibility, growth performance, feed utilization efficiency and tissue composition. Four experimental isoenergetic and isoproteic diets supplemented with B. subtilis were formulated with increasing starch to lipid ratios (g/g) of 10:19; 14:17; 18:15 and 22:13 (diets PD10, PD14, PD18 and PD22 respectively). A negative control diet for B. subtilis supplementation was also formulated to be similar to diet PD10 (diet CD10). Each experimental diet was fed to triplicate groups of 20 fish per tank (IBW: 9.5 g), three times a day, to apparent satiation, for 60 days. Supplementation with B. subtilis, of the low starch‐high lipid diet (10:19), significantly enhanced the overall growth performance, digestibility and feed efficiency. Moreover, the increase in starch to lipid ratio, in supplemented probiotic diets, significantly increased growth performance, feed intake, feed utilization efficiency and protein and energy digestibility, being maximum for the highest dietary starch to lipid level. Lipid content of whole body, muscle and liver and hepatosomatic index significantly increased with the increase in starch to lipid ratio. The results of this study indicate that B. subtilis supplementation significantly enhanced growth performance, digestibility and feed utilization of low starch‐high lipid diet. However, further improvement of growth performance and feed utilization efficiency may be achieved combining B. subtilis supplementation with increased dietary starch to lipid ratio to 22:13. 相似文献
9.
Alfonso Suárez Guadalupe Williams-Linera Carlos Trejo Juan Ignacio Valdez-Hernández Víctor Manuel Cetina-Alcalá Heike Vibrans 《Agroforestry Systems》2012,85(1):35-55
Species for restoration forestry on degraded lands in the tropics are often restricted to a few well-known exotic timber species. This selection frequently leads to failed projects, as local people expect trees to cover a number of uses, not only timber. We studied local knowledge of the usefulness, scarcity and importance for wildlife of native tree species in central Veracruz, Mexico, a region with mainly secondary vegetation and remnants of tropical dry forest. Data were obtained from several workshops, in depth interviews of 40 key informants, field walks with informants, and botanical collections. Analysis included indices for cultural importance, scarcity and wildlife relevance. We documented 76 species in one or more of the categories, from primary, secondary, agroforestry and riparian habitats. Fabaceae was the most important family. All of the species were useful for humans, mainly for rural construction, food, fence posts and fuel. Two-thirds of the species were considered scarce though they were not necessarily rare??some were highly useful, overexploited species with populations insufficient for demand; this category included five of the ten most important species culturally. Also, two-thirds of the tree taxa were considered important for wildlife, especially species of Moraceae. The study shows that the local population is highly aware of the varying functions of trees in the landscape. However, few of the important species are available from regional nurseries. We propose a number of species for restoration forestry, agroforestry systems and enrichment plantings that would be valued by landowners. 相似文献