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Bing Guo Kritaya Kongsuwan Paul L Greenwood Guanghong Zhou Wangang Zhang Brian P Dalrymple 《畜牧与生物技术杂志(英文版)》2014,5(1):35
Background
The expression of genes encoding proteins involved in triacyglyceride and fatty acid synthesis and storage in cattle muscle are correlated with intramuscular fat (IMF)%. Are the same genes also correlated with IMF% in sheep muscle, and can the same set of genes be used to estimate IMF% in both species?Results
The correlation between gene expression (microarray) and IMF% in the longissimus muscle (LM) of twenty sheep was calculated. An integrated analysis of this dataset with an equivalent cattle correlation dataset and a cattle differential expression dataset was undertaken. A total of 30 genes were identified to be strongly correlated with IMF% in both cattle and sheep. The overlap of genes was highly significant, 8 of the 13 genes in the TAG gene set and 8 of the 13 genes in the FA gene set were in the top 100 and 500 genes respectively most correlated with IMF% in sheep, P-value = 0. Of the 30 genes, CIDEA, THRSP, ACSM1, DGAT2 and FABP4 had the highest average rank in both species. Using the data from two small groups of Brahman cattle (control and Hormone growth promotant-treated [known to decrease IMF% in muscle]) and 22 animals in total, the utility of a direct measure and different estimators of IMF% (ultrasound and gene expression) to differentiate between the two groups were examined. Directly measured IMF% and IMF% estimated from ultrasound scanning could not discriminate between the two groups. However, using gene expression to estimate IMF% discriminated between the two groups. Increasing the number of genes used to estimate IMF% from one to five significantly increased the discrimination power; but increasing the number of genes to 15 resulted in little further improvement.Conclusion
We have demonstrated the utility of a comparative approach to identify robust estimators of IMF% in the LM in cattle and sheep. We have also demonstrated a number of approaches (potentially applicable to much smaller groups of animals than conventional methods) to using gene expression to rank animals for IMF% within a single farm/treatment, or to estimate differences in IMF% between two farms/treatments. 相似文献2.
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Bing Guo Kritaya Kongsuwan Paul L Greenwood Guanghong Zhou Wangang Zhang Brian P Dalrymple 《畜牧与生物技术杂志(英文版)》2014,(4):379-390
Background：The expression of genes encoding proteins involved in triacyglyceride and fatty acid synthesis and storage in cattle muscle are correlated with intramuscular fat（IMF）%.Are the same genes also correlated with IMF%in sheep muscle,and can the same set of genes be used to estimate IMF%in both species？Results：The correlation between gene expression（microarray） and IMF%in the longissimus muscle（LM） of twenty sheep was calculated.An integrated analysis of this dataset with an equivalent cattle correlation dataset and a cattle differential expression dataset was undertaken.A total of 30 genes were identified to be strongly correlated with IMF%in both cattle and sheep.The overlap of genes was highly significant,8 of the 13 genes in the TAG gene set and 8 of the 13 genes in the FA gene set were in the top 100 and 500 genes respertively most correlated with IMF%in sheep,P-value = 0.Of the 30 genes,CIDEA,THRSP,ACSM1,DGAT2 and FABP4 had the highest average rank in both species.Using the data from two small groups of Brahman cattle（control and Hormone growth promotant-treated[known to decrease IMF%in muscle]） and 22 animals in total,the utility of a direct measure and different estimators of IMF%（ultrasound and gene expression） to differentiate between the two groups were examined.Directly measured IMF%and IMF%estimated from ultrasound scanning could not discriminate between the two groups.However,using gene expression to estimate IMF%discriminated between the two groups.Increasing the number of genes used to estimate IMF%from one to five significantly increased the discrimination power;but increasing the number of genes to 15 resulted in little further improvement.Conclusion：We have demonstrated the utility of a comparative approach to identify robust estimators of IMF%in the LM in cattle and sheep.We have also demonstrated a number of approaches（potentially applicable to much smaller groups of animals than conventional methods） to using gene expression to rank animals for IMF%within 相似文献
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Haifeng Jia Shanshan Wang Hong Lin Takanori Satio Kongsuwan Ampa Yasushi Todoroki 《The Journal of Horticultural Science and Biotechnology》2018,93(4):392-399
The effects of applying abscisic acid (ABA), Abz (abscinazole, an inhibitor of CYP707A), and nordihydroguaiaretic acid ((NDGA), an inhibitor of 9-cis-epoxycarotenoid dioxygenase (NCED)) on fruit firmness, anthocyanin biosynthesis, aroma volatiles, and their related genes were investigated in grape berries (Vitis vinifera L. × Vitis labrusca L. cv. Kyoho). ABA and Abz application promoted the accumulation of anthocyanin and aroma volatiles, the activity of polygalacturonase (PG), pectin methylesterase, and cellulase, but reduced fruit firmness. On the other hand, NDGA showed the opposite tendencies. Abz decreased VvCYP707A1 expression but increased VvPYL8 expression. VvPP2C49 expression was negatively correlated with ABA concentration. The expression levels of VvMYBA2 and VvUFGT correlated with anthocyanin concentration, unlike those of VvLAR1. ABA and Abz application increased endogenous ABA concentrations and the expression levels of VvOPR3, VvACO1, and VvPG, whereas NDGA application decreased them. These results suggest that ABA concentrations influence anthocyanin formation and fruit softening through the expression of VvMYBA2, VvUFGT, and VvPG. 相似文献
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