Large‐scale patterns of fish diversity and assemblage structure in the longest tropical river in Asia          下载免费PDF全文

Ratha Chea  Sovan Lek  Pengbun Ngor  Gaël Grenouillet 《Ecology of Freshwater Fish》2017,26(4):575-585

Although the Mekong River is one of the world's 35 biodiversity hot spots, the large‐scale patterns of fish diversity and assemblage structure remain poorly addressed. This study aimed to investigate the fish distribution patterns in the Lower Mekong River (LMR) and to identify their environmental determinants. Daily fish catch data (i.e. from December 2000 to November 2001) at 38 sites distributed along the LMR were related to 15 physicochemical and 19 climatic variables. As a result, four different clusters were defined according to the similarity in assemblage composition and 80 indicator species were identified. While fish species richness was highest in the Mekong delta and lowest in the upper part of the LMR, the diversity index was highest in the middle part of the LMR and lowest in the delta. We found that fish assemblages changed along the environmental gradients and that the main drivers affecting the fish assemblage structure were the seasonal variation of temperature, precipitation, dissolved oxygen, pH and total phosphorus. Specifically, upstream assemblages were characterised by cyprinids and Pangasius catfish, well suited to low temperature, high dissolved oxygen and high pH. Fish assemblages in the delta were dominated by perch‐like fish and clupeids, more tolerant to high temperatures, and high levels of nutrients (nitrates and total phosphorus) and salinity. Overall, the patterns were consistent between seasons. Our study contributes to establishing the first holistic fish community study in the LMR.  相似文献   

Optimization of carbon stock models to local conditions using farmers' soil tests: A case study with AMGv2 for a cereal plain in central France     

Benjamin Nowak  Gaëlle Marliac 《Soil Use and Management》2020,36(4):633-645

Soil organic carbon (SOC) is associated with environmental benefits and crop productivity; therefore, monitoring of SOC stocks is important when assessing the sustainability of agricultural systems. This study applied a hybrid method and the results of on-farm soil tests to calibrate the AMGv2 model and adapt it to local conditions. The method was applied to soils in the Limagne plain (France), which shifted to cereal production since the 1960s. Based on analysing 988 soil test data, covering the period from 1954 to 2019, it was found that SOC stocks showed a significant decrease in the three main soil types of the study area. An optimization procedure estimated that the initial ratios of stable to total carbon fall in the ranges 0.42 and 0.46 for vertisols, 0.48 and 0.52 for calcisols, and 0.56 and 0.60 for fluvisols. Simulations using these values estimated that SOC stocks declined between 1960 and 2018 by between −31 and −17%, depending on soil type. The optimized model was used to forecast the evolution of SOC stocks up to 2050. These simulations showed a further decline in SOC stocks with continuation of current practices, even assuming a 15% increase in crop yields. They indicated that stopping straw exports would stabilize stocks, while a systematic introduction of cover crops would increase stocks about 3.8% over the period considered. It is concluded that this hybrid procedure can improve the adaptation of predictive models to local conditions.  相似文献   

Genomic characterization of the first oral avian papillomavirus in a colony of breeding canaries (<Emphasis Type="Italic">Serinus canaria</Emphasis>)     

Daniel A. Truchado  Michaël A. J. Moens  Sergio Callejas  Javier Pérez-Tris  Laura Benítez 《Veterinary research communications》2018,42(2):111-120

Papillomaviruses are non-enveloped, DNA viruses that infect skin and mucosa of a wide variety of vertebrates, causing neoplasias or simply persisting asymptomatically. Avian papillomaviruses, with six fully sequenced genomes, are the second most studied group after mammalian papillomaviruses. In this study, we describe the first oral avian papillomavirus, detected in the tongue of a dead Yorkshire canary (Serinus canaria) and in oral swabs of the same bird and other two live canaries from an aviary in Madrid, Spain. Its genome is 8,071 bp and presents the canonical papillomavirus architecture with six early (E6, E7, E1, E9, E2, E4) and two late open reading frames (L1 and L2) and a long control region between L1 and E6. This new avian papillomavirus L1 gene shares a 64% pairwise identity with FcPV1 L1, so it has been classified as a new species (ScPV1) within the Ethapapillomavirus genus. Although the canary died after showing breathing problems, there is no evidence that the papillomavirus caused those symptoms so it could be part of the oral microbiota of the birds. Hence, future investigations are needed to evaluate the clinical relevance of the virus.  相似文献   

Influence of larval and juvenile life history on age at first maturity in two tropical amphidromous fish species     

Raphaël Lagarde  Nils Teichert  Henri Grondin  Thomas Hue  Philippe Gaudin  Dominique Ponton 《Ecology of Freshwater Fish》2020,29(1):63-73

This study investigates how age at first maturity of two tropical amphidromous species Sicyopterus lagocephalus (Pallas, 1770) and Cotylopus acutipinnis (Guichenot, 1863) varies in relation to their larval and juvenile life history. Reproductive stage was estimated based on histological observation of ovaries of more than 200 females of each species caught monthly over 1 year. The age of fish was estimated by interpreting the daily increments deposited on otoliths during the oceanic larval phase, and the juvenile phase in the river. The age at first maturity was approximately 9 months for S. lagocephalus and 7 months for C. acutipinnis, corresponding to approximately 70–130 and 90–130 days after they returned to freshwater respectively. For both species, the time spent in freshwater before maturity was significantly influenced by the duration of the pelagic larval stage at sea (PLD) and the season of return in freshwater. Individuals with a long PLD, or returning in freshwater during the warmer season, maturated faster once in freshwater. This reproductive advantage may minimise the risk of extirpation due to catastrophic events at each generation and thus probably benefits amphidromous species living in very unpredictable tropical rivers.  相似文献   

Candidate gene expression and coding sequence variants in Warmblood horses with myofibrillar myopathy     

Zoë J. Williams  Deborah Velez-Irizarry  Jessica L. Petersen  Julien Ochala  Carrie J. Finno  Stephanie J. Valberg 《Equine veterinary journal》2021,53(2):306-315

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A 3-year long study of Staphylococcus aureus isolates from subclinical mastitis in three Azawak zebu herds at the Sahelian experimental farm of Toukounous,Niger     

Abdoulkarim Ibrahim Issa  Jean-Noël Duprez  Rianatou Bada-Alambedji  Mamane Djika  Jacques Georges Mainil  Marjorie Bardiau 《Tropical animal health and production》2016,48(2):321-329

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Preliminary evaluation of a gel tube agglutination major cross‐match method in dogs          下载免费PDF全文

Dania Villarnovo  Shelley A. Burton  Barbara S. Horney  Allan L. MacKenzie  Raphaël Vanderstichel 《Veterinary clinical pathology / American Society for Veterinary Clinical Pathology》2016,45(3):411-416

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Chronic eosinophilic granulomatous tenosynovitis in a Quarter Horse mare     

Zoë J. Williams  John McIlmurray  Frank Nickels 《Equine Veterinary Education》2023,35(2):e91-e97

A 5-year-old Quarter Horse mare was presented to the Michigan State University Equine Surgery Service for evaluation of a right hind metatarsophalangeal joint injury. On presentation, the horse was a grade 4/5 lame. Radiographs and ultrasonography showed peritendinous ossification/mineralisation of soft tissue structures and digital flexor tenosynovitis with profound intracapsular mineralisation. A digital flexor tendon sheath tenoscopy was performed with a plantar annular ligament desmotomy and a manica flexoria ligament tenotomy. During surgery, a significant amount of tan granular material was found within the digital tendon sheath. Approximately 80% of this material was removed, and a sample was sent for histopathology. The horse was diagnosed with eosinophilic granulomatous tenosynovitis. Long-term follow-up revealed improvement with four treatments of intralesional triamcinolone given 2–4 weeks apart. The horse became serviceably sound (grade 1/5) and was beginning light work under the saddle approximately 5 months post-tenoscopy.  相似文献   

Environmental correlates of body size distribution in Cyprinidae (Actinopterygians) depend on phylogenetic scale          下载免费PDF全文

Gaël P.J. Denys  Pablo A. Tedesco  Thierry Oberdorff  Philippe Gaubert 《Ecology of Freshwater Fish》2016,25(1):125-132

The pattern of increasing species body size with increasing latitude has been noticed in different groups of animals. Here, we used seven key environmental factors and independent contrasts to assess body size latitudinal clines in Cyprinidae at two phylogenetic levels (inter‐ and intragenera), which were defined using a genus‐level supertree. Model selection procedures revealed that environmental factors shaping body size variation in Cyprinidae differed according to the phylogenetic scale considered. At the higher phylogenetic level, we found that both temperature (negative effect) and habitat availability (positive effect of drainage basin surface area) constituted mechanistic explanations of large‐scale body size distribution. No temperature‐related body size cline was observed at the intragenus level. Instead, competitive interaction (negative effect of species richness), habitat availability (positive effect of drainage basin surface area), migration ability and available energy (positive effects of glacial coverage and actual evapotranspiration) constitute alternative explanations at this lower phylogenetic scale. We conclude that (i) at the intergenus level, cyprinids do show a tendency to be smaller at high temperatures and larger at low temperatures, (ii) this tendency no longer exists at the intragenus level, (iii) latitude per se is a weak predictor of body size clines whatever the taxonomic level analysed, (iv) generalising geographical body size patterns may be rendered difficult by the superimposition of a series of mechanisms across different taxonomic scales, and (v) habitat size, here acting positively at both taxonomic scales, may play a major role in shaping riverine species body size clines.  相似文献   

Detection of Salmonella organisms and assessment of a protocol for removal of contamination in horse stalls at a veterinary teaching hospital     

Alinovi CA  Ward MP  Couëtil LL  Wu CC 《Journal of the American Veterinary Medical Association》2003,223(11):1640-1644

OBJECTIVES: To assess methods of detecting environmental contamination with Salmonella organisms and evaluate a cleaning and disinfection protocol for horse stalls in a veterinary teaching hospital. DESIGN: Original study. SAMPLE POPULATION: 37 horses with diarrhea likely to be caused by Salmonella infection and their stall environments. PROCEDURES: Fecal samples were collected from horses daily during hospitalization; samples were obtained from stall sites after cleaning and application of disinfectants. Fecal and environmental samples were cultured for Salmonella spp and tested via polymerase chain reaction (PCR) assay to detect Salmonella DNA. RESULTS: 1 horse died and 2 were discharged prior to sample collection. Fecal samples from 9 of 34 horses yielded growth of Salmonella organisms on bacteriologic culture, and 23 yielded positive results via PCR assay on > or = 1 occasion. Among environmental samples from 21 stalls, salmonellae were detected at > or = 1 stall site on 6 of 78 occasions, and > or = 1 stall site yielded positive results via PCR assay on 69 of 77 occasions. Salmonella DNA was detected more frequently in samples of stall drains, cracks, and corners. Salmonella spp were cultured from samples of 3 stalls after both initial and second cleaning and disinfection cycles, but no organisms were detected in samples obtained after use of a peroxygen disinfectant. CONCLUSIONS AND CLINICAL RELEVANCE: Results suggest that stalls in which horses with salmonellosis were housed should only be used to accommodate newly hospitalized horses after samples (collected after 2 cycles of cleaning and disinfection) from drains, cracks, and corners yield negative results on bacteriologic culture.  相似文献