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1.
Kaarina Matilainen Ismo Strandén Gert Pedersen Aamand Esa A. Mäntysaari 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2018,135(5):337-348
Joint Nordic (Denmark, Finland, Sweden) genetic evaluation of female fertility is currently based on the multiple trait multilactation animal model (BLUP). Here, single step genomic model (ssGBLUP) was applied for the Nordic Red dairy cattle fertility evaluation. The 11 traits comprised of nonreturn rate and days from first to last insemination in heifers and first three parities, and days from calving to first insemination in the first three parities. Traits had low heritabilities (0.015–0.04), but moderately high genetic correlations between the parities (0.60–0.88). Phenotypic data included 4,226,715 animals with records and pedigree 5,445,392 animals. Unknown parents were assigned into 332 phantom parent groups (PPG). In mixed model equations animals were associated with PPG effects through the pedigree or both the pedigree and genomic information. Genotype information of 46,914 SNPs was available for 33,969 animals in the pedigree. When PPG used pedigree information only, BLUP converged after 2,420 iterations whereas the ssGBLUP evaluation needed over ten thousand iterations. When the PPG effects were solved accounting both the pedigree and the genomic information, the ssGBLUP model converged after 2,406 iterations. Also, with the latter model breeding values by ssGBLUP and BLUP became more consistent and genetic trends followed each other well. Models were validated using forward prediction of the young bulls. Reliabilities and variance inflation of predicted genomic breeding values (values for parent averages in brackets) for the 11 traits ranged 0.22–0.31 (0.10–0.27) and 0.81–0.95 (0.83–1.06), respectively. The ssGBLUP model gave always higher validation reliabilities than BLUP, but largest increases were for the cow fertility traits. 相似文献
2.
Dey and Joshi (Reports, 21 April 2006, p. 434) studied replicate laboratory populations of Drosophila and reported that low migration led to asynchrony among subpopulations. We argue that this unexpected outcome may be due to variation in the initial size of the subpopulations and uncontrolled stochasticity in the experiments. 相似文献
3.
D. Arias J. Peñaloza-Ramírez O. Dorado P. Cuevas-Reyes Esaú Leyva Ana Luisa Albarrán-Lara G. Rangel-Altamirano 《Genetic Resources and Crop Evolution》2010,57(8):1227-1238
Jacaratia mexicana A. DC. (Caricaceae) is a tropical tree distributed throughout Mexico and Mesoamerica. Some evidence in Mexico indicates the
presence of an incipient domestication process in this species. Phylogeographical analyses can potentially determine contemporary
patterns of gene flow, isolation between population lineages, as well as historical processes such as population bottlenecks
or expansions on their geographical areas. In this study we reconstruct the phylogeographical patterns in populations of J. mexicana A. DC., in order to find differences between genetic variation among wild and cultivated populations utilizing chloroplast
DNA and nuclear DNA sequences. We generate a Bayesian phylogenetic tree, to estimate the divergence time between clades using
calibrated mutation rates. We also infer the demographic history of these populations using neutrality tests among wild and
cultivated accessions. We identified higher levels of haplotype and nucleotide diversity for the cpDNA and ITS types in wild
populations than in domesticated populations. These results indicate a reduction of genetic diversity derived from human selection
on domestication traits. Neutrality test suggests population expansion detected by the significant negative values of Fu’s
Fs in the cultivated populations of this specie. These process results in an excess of rare polymorphism with the fixation
of certain advantageous mutation throughout time, this implication are in accordance with the role of the strong selection
in the fruit traits of J. mexicana. The dated phylogeny constructed with BEAST program indicated a dispersion pattern for the J. mexicana ancestors across the South Pacific and South Eastern populations during the late Pliocene. Posterior dispersion and divergence
in the clades from Central Mexico and North Pacific are in agreement with the episodes of mountain-building in different regions
of Mexico. 相似文献
4.
Enyew Negussie Minna Koivula Esa A. Mäntysaari 《Acta Agriculturae Scandinavica, Section A - Animal Sciences》2013,63(2):73-82
Abstract Genetic parameters were estimated for lactation average somatic cell score (SCS) and clinical mastitis (CM) for the first three lactations of multiparous Finnish Ayrshire cows. A multi-trait linear sire model was used for estimation of covariance components, and the efficiencies of single- versus multi-trait multi-lactation (MT) sire evaluations were compared. Heritability of SCS and CM in the first three lactations ranged from 0.11 to 0.13 and 0.02 to 0.03, respectively. Within lactation, genetic correlations between SCS and CM ranged from 0.68 to 0.72. Within both traits, across-lactation genetic correlations were lowest between 1 and 3, and highest between 2 and 3, with estimates ranging from 0.75 to 0.86 and from 0.81 to 0.98 for CM and SCS, respectively. Residual and phenotypic correlations were low and ranged from 0.09 to 0.13 and from 0.10 to 0.13, respectively. The absolute difference between genetic and residual correlations was from 0.5 to 0.6. Within-lactation genetic correlations between traits that are much less than unity suggest a multi-trait model for genetic evaluation of mastitis resistance. Comparison of model prediction performance between single-trait (ST) and MT models using a data splitting method showed that the MT model was more stable in predicting breeding values in future records of animals. Especially, for young sires and CM, the SD of EBVs from the MT model was 14 to 23% higher than the ST model, indicating more effective use of information in terms of revealing more genetic variation. 相似文献
5.
Liska WD Marcellin-Little DJ Eskelinen EV Sidebotham CG Harrysson OL Hielm-Björkman AK 《Veterinary surgery : VS》2007,36(4):293-301
Objective— To report surgical planning, technique, and outcome of custom total knee replacement (TKR) performed to manage a medial femoral condylar nonunion in a dog.
Study Design— Clinical case report.
Animal— A 3-year-old, 20 kg Karelian Bear Hound.
Methods— Computed tomographic scan of the left pelvic limb was used to build a stereolithography model of the distal portion of the femur. The model was used to create a custom augment to replace the missing medial femoral condyle and a custom stem for intramedullary condylar cemented fixation. The augment and stem were adapted to femoral and tibial components already available. The model was used to rehearse the surgery and then the custom prosthesis was implanted.
Results— Weight bearing returned 8 hours after surgery and improved thereafter. Joint alignment was normal and prosthetic joint motion was 60–165° postoperatively. The dog resumed moose hunting 3 months after surgery. Peak vertical force and impulse of the operated limb measured 17 months after surgery were 65% and 47% of the normal, contralateral limb.
Conclusion— Based on short-term follow-up, cemented canine TKR was successfully achieved for management of a severely abnormal stifle joint.
Clinical Relevance— With further refinement and development of commercially available prostheses, TKR should be possible for canine patients. 相似文献
Study Design— Clinical case report.
Animal— A 3-year-old, 20 kg Karelian Bear Hound.
Methods— Computed tomographic scan of the left pelvic limb was used to build a stereolithography model of the distal portion of the femur. The model was used to create a custom augment to replace the missing medial femoral condyle and a custom stem for intramedullary condylar cemented fixation. The augment and stem were adapted to femoral and tibial components already available. The model was used to rehearse the surgery and then the custom prosthesis was implanted.
Results— Weight bearing returned 8 hours after surgery and improved thereafter. Joint alignment was normal and prosthetic joint motion was 60–165° postoperatively. The dog resumed moose hunting 3 months after surgery. Peak vertical force and impulse of the operated limb measured 17 months after surgery were 65% and 47% of the normal, contralateral limb.
Conclusion— Based on short-term follow-up, cemented canine TKR was successfully achieved for management of a severely abnormal stifle joint.
Clinical Relevance— With further refinement and development of commercially available prostheses, TKR should be possible for canine patients. 相似文献
6.
7.
Kaarina Matilainen Raphael Mrode Ismo Strandn Robin Thompson Esa A. Mntysaari 《Livestock Science》2009,122(2-3):143-148
Breeding value evaluation for UK Limousin beef cattle data was carried out by multiple-trait linear–threshold animal model with variance components assumed to be known. Polychotomous calving ease with five categories was analysed with two continuous traits: birth weight and gestation length. Field data consisted of 220,799 animals with observations with every possible combination of traits, and 270,035 animals in the pedigree. The threshold model was solved either with Newton Raphson or Expectation Maximisation algorithm, and solutions were compared to evaluation by a linear model with original and normalised scores. There were insignificant differences in solutions between the two algorithms for threshold model analyses. Furthermore, solutions of the continuous traits were similar by the threshold and linear models. For the categorical trait, correlations for random effects from the threshold and linear models were high. In case of normalised scores (original scores case in brackets) correlations with solutions from the threshold and linear model were 0.97 (0.94) and 0.97 (0.93) for direct and maternal genetic effects and 0.95 (0.89) for permanent maternal effects. Even so, at least one third of the top 1% ranking of bulls differed between the linear and the threshold models. Predictive abilities as correlations between estimated breeding values and pedigree indices were almost equal between the linear and threshold models for both continuous and categorical traits. In conclusion, despite the higher computational demand, the linear–threshold animal model can be seen worthwhile in the genetic evaluation of the national UK beef cattle data set. 相似文献
8.
Mokkonen M Kokko H Koskela E Lehtonen J Mappes T Martiskainen H Mills SC 《Science (New York, N.Y.)》2011,334(6058):972-974
Sexually antagonistic genetic variation, where optimal values of traits are sex-dependent, is known to slow the loss of genetic variance associated with directional selection on fitness-related traits. However, sexual antagonism alone is not sufficient to maintain variation indefinitely. Selection of rare forms within the sexes can help to conserve genotypic diversity. We combined theoretical models and a field experiment with Myodes glareolus to show that negative frequency-dependent selection on male dominance maintains variation in sexually antagonistic alleles. In our experiment, high-dominance male bank voles were found to have low-fecundity sisters, and vice versa. These results show that investigations of sexually antagonistic traits should take into account the effects of social interactions on the interplay between ecology and evolution, and that investigations of genetic variation should not be conducted solely under laboratory conditions. 相似文献
9.
Minna Koivula Anna Pitkälä Esa A. Mäntysaari 《Acta Agriculturae Scandinavica, Section A - Animal Sciences》2013,63(2):89-96
Abstract A database containing pathogen-specific information on mastitis has been established in Finland. The data consist of the results from routine milk samples collected from clinical and subclinical mastitis and submitted to laboratories all over the country. In the database, bacteriological information has been recorded on an individual cow basis. A total of 77,051 pathogen records submitted to the database from 1 January 2004 to 1 January 2006 were retrieved for this preliminary report of pathogen distribution. Staphylococcus aureus (18.26% and 17.73%) and coagulase negative staphylococci (CNS) (17.57% and 23.51%) were the most frequently isolated pathogens from the milk samples. Seasonal and regional differences in pathogen distribution were also found. The pathogen information is primarily used for targeting the antimicrobial treatment of the cow, but also for designing specific mastitis control strategies for the herds. Pathogen data can also be useful for national mastitis control programmes and breeding programmes of dairy cattle for the selection of more resistant animals. 相似文献
10.
Jussi Peura Ismo Strandén Esa A. Mäntysaari 《Acta Agriculturae Scandinavica, Section A - Animal Sciences》2013,63(4):137-144
Abstract Finnish blue fox farmers breed for increased litter size and pelt size, and improved fur quality. Some farmers select pelt size and fur quality indirectly using live animal evaluations (grading traits). In order to be able to define breeding goals properly, heritabilities and genetic correlations were estimated for size traits and fur quality traits. There were four pelt character traits (pelt size, pelt colour darkness, pelt colour clarity and pelt quality) measured on dried skins, and six grading traits (animal size, grading colour darkness, grading colour clarity, underfur density, guard hair coverage and grading quality). The data included 54,680 animals born during the years 1987–2002, originating from seven farms. The heritabilities were high for pelt colour darkness and grading colour darkness, moderate for pelt size and low for other traits. In general, heritability of a pelt character trait was higher than its corresponding grading trait. Genetic correlations within the pelt character traits were low (～0.11) and within the grading traits mainly moderate or high (～0.44). There was high genetic correlation between pelt darkness and grading darkness, pelt quality and grading density, pelt size and animal size; between pelt quality and grading quality and between pelt colour darkness and grading guard hair coverage. This suggests that selection of pelt character traits via grading traits in most cases is relatively effective. 相似文献