Selection,optimization and characterization of molecular tests for the detection of Tobacco ringspot virus (TRSV)     

J. P. Renvois  F. Chambon  M. Gleize  N. Pradeilles  S. Garnier  M. Rolland 《EPPO Bulletin》2019,49(1):111-121

The aim of the study was to select, optimize and characterize RT‐PCR tests for the detection of Tobacco ringspot virus (TRSV) in post‐entry quarantine. Among five different tests, the Poojari et al. (Journal of Virological Methods 235, 112–118) and Jossey & Babadoost (Plant Disease 90, 1361) conventionnal RT‐PCR tests were chosen and optimized for this purpose. Ten TRSV isolates, 17 healthy plants from the genera Vitis, Prunus and Malus, four other Nepoviruses or Secoviridae isolates and serial dilutions of three TRSV isolates were used for the complete characterization of the optimized tests. In the tested conditions, the Poojari and Jossey & Babadoost tests respectively showed 100% and 95% inclusivity, 100% and 100% exclusivity, 100% and 96.4% analytical specificity, 100% and 100% diagnostic specificity, [10^?7; 10^?1] and [10^?8; 10^?2] limit of detection dilution factors (analytical sensitivity), 91.1% and 90.0% repeatability, 90.3% and 91.1% reproducibility and 100% and 100% selectivity. Due to its higher inclusivity, the optimized Poojari test is recommended for the detection of TRSV isolates for post‐entry quarantine purposes, but can also be used for global surveys. The optimized Jossey & Babadoost test showed the best analytical sensitivity, suggesting that combining both tests can further enhance detection.  相似文献   

Oxidation-resistant gold-55 clusters     

Boyen HG  Kästle G  Weigl F  Koslowski B  Dietrich C  Ziemann P  Spatz JP  Riethmüller S  Hartmann C  Möller M  Schmid G  Garnier MG  Oelhafen P 《Science (New York, N.Y.)》2002,297(5586):1533-1536

Gold nanoparticles ranging in diameter from 1 to 8 nanometers were prepared on top of silicon wafers in order to study the size dependence of their oxidation behavior when exposed to atomic oxygen. X-ray photoelectron spectroscopy showed a maximum oxidation resistance for "magic-number" clusters containing 55 gold atoms. This inertness is not related to electron confinement leading to a size-induced metal-to-insulator transition, but rather seems to be linked to the closed-shell structure of such magic clusters. The result additionally suggests that gold-55 clusters may act as especially effective oxidation catalysts, such as for oxidizing carbon monoxide.  相似文献   

Modelling carbon and nitrogen dynamics in a bare soil with and without straw incorporation   总被引：2，自引：0，他引：2  

P. Garnier ¶  C. Néel  C. Aita  S. Recous  F. Lafolie  & B. Mary 《European Journal of Soil Science》2003,54(3):555-568

Incorporating straw into the ploughed layer of soil affects the dynamics of carbon and nitrogen. A precise quantification of its short‐term effect in agricultural fields is difficult because biological and physical processes interact and take place simultaneously. As an alternative to experimentation, investigations have turned to simulations using mechanistic models, and we have taken this approach. The goal of our study was to test a mechanistic and one‐dimensional model of transport and biotransformation (PASTIS) against a data set obtained in a field experiment in northern France. We tested carbon and nitrogen dynamics by measuring C mineralization rates, the rates of gross immobilization and mineralization of N (using ¹⁵N tracing), and inorganic pools of N in the soil profile during 1 year in a bare soil with or without addition of wheat straw. Most of the model parameters were determined in independent experiments. We estimated the biological parameters from incubation experiments in the laboratory. The simulated results were in good agreement with experimental data, particularly for gross N rates. Hypotheses concerning the pathway of microbial assimilation and the dependence of decomposition on the size of the biomass were tested. The simulated net N immobilization due to addition of straw (8000 kg dry matter ha^?1) reached a maximum of 64 kg N ha^?1 after 2 months, whereas the observed value was 66 kg N ha^?1. The model indicated that after 13 months the incorporation of straw had reduced the net amount of nitrogen mineralized by 13% and the amount of leached nitrate by 27%. The sensitivity analysis to the depth of straw incorporation indicated that the deeper was the incorporation the less was the leaching and the mineralization of nitrogen.  相似文献   

Pharmacokinetics of albendazole administered by an intraruminal pulse release electronic device in cattle     

P Delatour  R J Gyurik  E Benoit  F Garnier 《Research in veterinary science》1987,43(3):284-286

Albendazole was administered to 12 young Charolais cattle, 300 kg bodyweight, using an intraruminal pulse release electronic device. The device released 2 g albendazole three times at 31 day intervals. The kinetic study of two main metabolites of albendazole in all animals at the time of each release showed that on 36 occasions the devices worked at the expected time; the mean kinetic profiles were nearly identical at first, second and third release. A good repeatability was generally also noticed for each animal individually; the bioavailability of the drug did not seem to be different from that obtained after administration of albendazole as an oral drench.  相似文献   

Effect of spatial scale of soil data on estimates of soil ecosystem services: Case study in 100 km2 area in France     

Ottone Scammacca  Ophélie Sauzet  Joel Michelin  Pauline Choquet  Patricia Garnier  Benoit Gabrielle  Philippe C. Baveye  David Montagne 《European Journal of Soil Science》2023,74(2):e13359

Over the last decade, the ecosystem services (ESs) framework has been increasingly used to support mapping and assessment studies for sustainable land management purposes. Previous analysis of practical applications has revealed the significance of the spatial scale at which input data are obtained. This issue is particularly problematic with soil data that are often unavailable or available only at coarse scales or resolutions in various part of the world. In this context, four soil-based ecosystem services, namely biomass provision, water provision, global climate regulation, and water quality regulation, are assessed using three conventional soil maps at the 1:1,000,000, 1:250,000 and 1:50,000 scales. The resulting individual and joint ES maps are then compared to examine the effects of changing the spatial scale of soil data on the ES levels and spatial patterns. ES levels are finally aggregated to landforms, land use, or administrative levels in order to try to identify the determinants of the sensitivity of ES levels to change in the scale of input soil data. Whereas the three soil maps turn out to be equally useful whenever ESs levels averaged over the whole 100 km² territory are needed, the maps at the 1:1,000,000 and 1:250,000 induced biases in the assessment of ESs levels over spatial units smaller than 100 and 10 km², respectively. The simplification of the diversity and spatial distribution of soils at the two coarsest scales indeed resulted in local differences in ES levels ranging from several 10 to several 100%. Identification of the optimal representation of soil diversity and distribution to obtain a reliable representation of ESs spatial distribution is not straightforward. The ESs sensitivity to scale effect is indeed context-specific, variable among individual ESs, and not directly or simply linked with the soil typological diversity represented in soil maps. Forested and natural lands in the study area appear particularly sensitive to soil data scales as they occupy marginal soils showing very specific ESs signatures.  相似文献   

Correction to: Coupling landscape graph modeling and biological data: a review     

Foltête  Jean-Christophe  Savary  Paul  Clauzel  Céline  Bourgeois  Marc  Girardet  Xavier  Sahraoui  Yohan  Vuidel  Gilles  Garnier  Stéphane 《Landscape Ecology》2020,35(5):1053-1053

Landscape Ecology - In the original publication of the article, the sixth author name has been misspelt. The correct name is given in this Correction. The original article has been corrected.  相似文献   

Primary Hyperparathyroidism and Monoclonal Gammopathy in a Dog     

G. Benchekroun  A. Desmyter  A. Hidalgo  H.-J. Boulouis  E. Gomes  F. Garnier  L. Escoffier  L. Poujol  P. de Fornel-Thibaud  C. Maurey  D. Rosenberg 《Journal of veterinary internal medicine / American College of Veterinary Internal Medicine》2009,23(1):211-214

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Development of a platform of antibody-presenting liposomes     

Garnier B  Tan S  Gounou C  Brisson AR  Laroche-Traineau J  Jacobin-Valat MJ  Clofent-Sanchez G 《Biointerphases》2012,7(1-4):11

Antibody-presenting liposomes present high interest as drug delivery systems. The association of antibodies to liposomes is usually realized by covalent coupling of IgGs or their antigen-binding fragments to lipid polar head groups by means of hetero-bifunctional crosslinkers. We present here an original platform of IgG-presenting liposomes which is based on a fusion protein between Annexin-A5 (Anx5) and the IgG-binding ZZ repeat derived from Staphylococcus aureus protein A. The Anx5ZZ fusion protein acts as a bi-functional adaptor that anchors IgGs to liposomes in a non covalent and highly versatile manner. The interactions between IgGs, Anx5ZZ and liposomes were characterized by PAGE, dynamic light scattering and fluorescence quenching assays, establishing that binding of Anx5ZZ to IgGs and of Anx5ZZ-IgG complexes to liposomes is complete with stoichiometric amounts of each species. We found that the sequence of assembly is important and that Anx5ZZ-IgG complexes need to be formed first in solution and then adsorbed to liposomes in order to avoid aggregation. The targeting capacity of Anx5ZZ-IgG-functionalized liposomes was demonstrated by electron microscopy on an ex vivo model system of atherosclerotic plaques. This study shows that the Anx5ZZ adaptor constitutes an efficient platform for functionalizing liposomes with IgGs. This platform may present potential applications in molecular imaging and drug delivery.  相似文献   

A 13CO2 Enrichment Experiment to Study the Synthesis Pathways of Polyunsaturated Fatty Acids of the Haptophyte Tisochrysis lutea     

Marine Remize  Frdric Planchon  Matthieu Garnier  Ai Ning Loh  Fabienne Le Grand  Antoine Bideau  Christophe Lambert  Rudolph Corvaisier  Aswani Volety  Philippe Soudant 《Marine drugs》2022,20(1)

The production of polyunsaturated fatty acids (PUFA) in Tisochrysis lutea was studied using the gradual incorporation of a ¹³C-enriched isotopic marker, ¹³CO₂, for 24 h during the exponential growth of the algae. The ¹³C enrichment of eleven fatty acids was followed to understand the synthetic pathways the most likely to form the essential polyunsaturated fatty acids 20:5n-3 (EPA) and 22:6n-3 (DHA) in T. lutea. The fatty acids 16:0, 18:1n-9 + 18:3n-3, 18:2n-6, and 22:5n-6 were the most enriched in ¹³C. On the contrary, 18:4n-3 and 18:5n-3 were the least enriched in ¹³C after long chain polyunsaturated fatty acids such as 20:5n-3 or 22:5n-3. The algae appeared to use different routes in parallel to form its polyunsaturated fatty acids. The use of the PKS pathway was hypothesized for polyunsaturated fatty acids with n-6 configuration (such as 22:5n-6) but might also exist for n-3 PUFA (especially 20:5n-3). With regard to the conventional n-3 PUFA pathway, Δ6 desaturation of 18:3n-3 appeared to be the most limiting step for T. lutea, “stopping” at the synthesis of 18:4n-3 and 18:5n-3. These two fatty acids were hypothesized to not undergo any further reaction of elongation and desaturation after being formed and were therefore considered “end-products”. To circumvent this limiting synthetic route, Tisochrysis lutea seemed to have developed an alternative route via Δ8 desaturation to produce longer chain fatty acids such as 20:5n-3 and 22:5n-3. 22:6n-3 presented a lower enrichment and appeared to be produced by a combination of different pathways: the conventional n-3 PUFA pathway by desaturation of 22:5n-3, the alternative route of ω-3 desaturase using 22:5n-6 as precursor, and possibly the PKS pathway. In this study, PKS synthesis looked particularly effective for producing long chain polyunsaturated fatty acids. The rate of enrichment of these compounds hypothetically synthesized by PKS is remarkably fast, making undetectable the ¹³C incorporation into their precursors. Finally, we identified a protein cluster gathering PKS sequences of proteins that are hypothesized allowing n-3 PUFA synthesis.  相似文献   

Characterization of depolymerized cellulosic residues     

J. Bouchard  G. Garnier  P. Vidal  E. Chornet  R. P. Overend 《Wood Science and Technology》1990,24(2):159-169

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