Sequence and unique phylogeny of G genes of bovine respiratory syncytial viruses circulating in Japan     

Asuka Kumagai  Kyoko Kawauchi  Kiyohiko Andoh  Shinichi Hatama 《Journal of veterinary diagnostic investigation》2021,33(1):162

Bovine respiratory syncytial virus (BRSV) is an etiologic agent of bovine respiratory disease. The rapid evolutionary rate of BRSV contributes to genetic and antigenic heterogeneity of field strains and causes occasional vaccine failure. We conducted molecular epidemiologic characterization of BRSV circulating in Japan to obtain genetic information for vaccine-based disease control. Phylogenetic analysis of G and F gene sequences revealed that all of the isolated Japanese BRSV strains clustered in the same genetic subgroup, which was distinct from the 9 known groups. We assigned the Japanese group to subgenotype X. The Japanese isolates formed 2 temporal clusters: isolates from 2003 to 2005 clustered in lineage A; isolates from 2017 to 2019 formed lineage B. The alignment of the deduced amino acid sequences of the G gene revealed that the central hydrophobic region responsible for viral antigenicity is conserved in all of the isolates; unique amino acid mutations were found mainly in mucin-like regions. Our results suggest that BRSV has evolved uniquely in Japan to form the new subgenotype X; the antigenic homogeneity of the viruses within this group is inferred.  相似文献   

Changes in expression and localization of GPRC5B and RARalpha in the placenta and yolk sac during middle to late gestation in mice     

Imanishi S  Sugimoto M  Morita M  Kume S  Manabe N 《The Journal of reproduction and development》2007,53(5):1131-1136

The mRNA expression of GPRC5B, an orphan G protein-coupled receptor, is induced by retinoic acid (RA). Because RA plays critical roles in embryonic development, reproductive functions, metabolism and homeostasis, GPRC5B is also considered crucial in these physiological events. We investigated the changes in expression of GPRC5B and RA receptor (RAR) alpha mRNAs and immunohistochemical localization of their proteins in the murine placenta and yolk sac at 13.5, 15.5 and 17.5 days post coitus. Stable levels of GPRC5B and RARalpha mRNAs were detected in the placenta and yolk sac. In the placenta, GPRC5B was present in maternal and fetal vascular endothelial cells, stromal cells, fibroblast-like cells and glycogen cells. A strong reaction to RARalpha was detected in maternal and fetal vascular endothelial cells and stromal cells. The levels of GPRC5B and RARalpha proteins in maternal and fetal vascular endothelial cells decreased with gestation. In the yolk sac, GPRC5B and RARalpha proteins were detected in vascular endothelial cells, but their levels did not change during the gestation period. These findings indicate that GPRC5B is involved in RA-dependent morphogenesis/angiogenesis and regulation of extracellular matrix synthesis in the murine placenta and yolk sac.  相似文献   

Mottle necrosis of sweet potato caused by <Emphasis Type="Italic">Pythium scleroteichum</Emphasis> in Japan and varietal difference in susceptibility to the disease     

Motoaki Tojo  Ken Watanabe  Kenichi Kida  Yingjie Li  Shuhei Numata 《Journal of General Plant Pathology》2007,73(2):121-124

Severe mottle necrosis (Shirogusare-byo in Japanese) was found on mature tubers of sweet potato (Ipomoea batatas) in Ibaraki Prefecture in October 2004. The causal organism was identified as Pythium scleroteichum hitherto unknown in Japan. Sweet potato cultivar Purple Sweet Lord was more susceptible than cultivars Beniazuma, Benimasari, Koukei-14, and Tamayutaka to the pathogen at 25°C, while this difference in the susceptibility was not clear at 15°C.  相似文献   

Stem water transport of Lithocarpus edulis, an evergreen oak with radial-porous wood     

Hirose S  Kume A  Takeuchi S  Utsumi Y  Otsuki K  Ogawa S 《Tree physiology》2005,25(2):221-228

The stem water conducting system of an evergreen broad-leaved oak, Lithocarpus edulis (Mak.) Nakai, was investigated. Evergreen broad-leaved oaks (Lithocarpus, Castanopsis, Cyclobalanopsis, Quercus) belonging to the Quercoideae are a major component of Asian monsoon forests, and are characterized by the possession of radial-porous wood. A characteristic of radial-porous wood is the development of aggregate rays between radially oriented files of vessels. We measured the distribution of vessel lumen diameters in a stem cross section and calculated the theoretical water conductivity of the wood. The radial profile of the heat pulse velocity (HPV) was measured for an intact whole tree under field conditions and compared with the theoretical distribution of water conductivity. Soft X-ray photographs of frozen stem sections indicated that most of the vessel lumina were filled with water, including those of vessels more than 20 years old. Even when vessels were relatively wide (lumen diameters > 100 microm), cavitation was negligible. The rate of water uptake from the cut stem base correlated closely with HPV (r = 0.96), and HPV closely reflected the mean volume flow per stem sectional area (SFVS) around the sensor probes. However, the ray tissue sharply inhibited heat transfer, and the positioning of the probes strongly affected the absolute value of HPV. It was also found that HPV more closely reflected the mean sap flow velocity in the vessels than did SFVS.  相似文献   

Individual-level analysis of damage to residual trees after single-tree selection harvesting in northern Japanese mixedwood stands     

Shinichi Tatsumi  Toshiaki Owari  Hisatomi Kasahara  Yuji Nakagawa 《Journal of Forest Research》2014,19(4):369-378

Quantifying tree damage and mortality caused by single-tree selection harvesting is critical to understanding postharvest forest dynamics and management. In this study, we quantified the effects of tree size and species and the distance from residual trees to felled trees and skid trails on damage to residual trees and mortality in mixed coniferous–broadleaved stands of Hokkaido, northern Japan. Among the 4,961 trees that we studied, 373 (7.5 %) were damaged, and 148 of these trees (3.0 %) died during or immediately after logging. Hierarchical Bayesian modeling showed that the risk of damage to residual trees increased with increasing size of the felled trees and with increasing proximity to felled trees and skid trails. Smaller residual trees had the greatest risk of damage. Species differed in their susceptibility to damage; Abies sachalinensis (Fr. Schm.) Masters and Picea jezoensis (Sieb. et Zucc.) Carr. were the most susceptible species in our sample plots. Smaller damaged trees had the highest risk of mortality. The damaged trees that did not die at the time of logging had a higher risk of postharvest mortality than undamaged trees. Our results indicate that, to minimize logging-induced damage and mortality: (1) the spatial arrangement of skid trails should be optimized and fixed, (2) the risk of skidding damage should be considered before marking the trees to be harvested and choosing the felling direction, and (3) logging operators should be instructed to avoid damaging small trees, especially those of the species that are most susceptible to damage.  相似文献   

Performance of a closed recirculating system with foam separation, nitrification and denitrification units for intensive culture of eel: towards zero emission   总被引：10，自引：0，他引：10  

Yoshihiro Suzuki  Toshiroh Maruyama  Hiroyuki Numata  Hajime Sato  Makio Asakawa 《Aquacultural Engineering》2003,29(3-4):165-182

The development of a closed recirculating aquaculture system that does not discharge effluents would reduce a large amount of pollutant load on aquatic bodies. In this study, eel were reared in a closed recirculating system, which consisted of a rearing tank, a foam separation unit, a nitrification unit and a denitrification unit. The foam separation unit has an inhalation-type aerator and supplies air bubbles to the rearing water. The growth of eel, which were fed a commercial diet, was satisfactory, with gross weight increases of up three times in 3 months. The survival rate under the congested experimental conditions was 91%. The foam separation unit maintained oxygen saturation in the rearing water at about 80%. Furthermore, fine colloidal substances were absorbed on the stable foam formed from eel mucus and were removed from the rearing water by foam separation. Ammonia oxidation and the removal of suspended solids were accomplished rapidly and simultaneously in the nitrification unit. The ammonia concentration and turbidity were kept at less than 1.2 mg of N per litre and 2.5 units, respectively. When the denitrification process was operated, nitrate that accumulated in the rearing water (151 mg of N per litre) was reduced to 40 mg of N per litre. The sludge was easily recovered from the nitrification and denitrification tanks, and the components were found suitable as compost. Based on these results, the intensive aquaculture of freshwater fish such as eel can be achieved using a closed recirculating system without emission.  相似文献   

Production of docosahexaenoic acid bounded phospholipids via phospholipase A2 mediated bioconversion     

Shinichi Awano  Koji Miyamoto  Masashi Hosokawa  Mitsumasa Mankura  Koretaro Takahashi 《Fisheries Science》2006,72(4):909-911

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Myxobolus aeglefini found in the skeletal muscle of porous-head eelpout Allolepis hollandi from the Sea of Japan     

Hiroshi Yokoyama  Shinichi Wakabayashi 《Fisheries Science》2000,66(5):963-966

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Reductions in greenhouse gas emissions by using wood to protect against soil liquefaction     

Chihiro Kayo  Seiji Hashimoto  Atsunori Numata  Masanori Hamada 《Journal of Wood Science》2011,57(3):234-240

We compared the greenhouse gas (GHG) emissions from a log pile (LP) to those from a sand compaction pile (SCP) and from cement deep mixing (CDM) as measures against soil liquefaction, assuming that forest and waste management scenarios influence the GHG (CO₂, CH₄, and N₂O) balance of wood. We found little difference between the LP and SCP methods with respect to GHG emissions from fossil fuel and limestone consumption. However, GHG emissions from the CDM method were seven times higher than emissions from the LP method. In the GHG balance of wood, when the percentage of CH₄ emissions from carbon in underground wood was lower than 3.3%, permanent storage in the log achieved greater reductions in GHG emissions than using the waste log as fuel in place of coal or heavy oil. In order to obtain reductions in GHG emissions by replacing SCPs or CDM with LPs, sustainable forest management with reforestation and prevention of CH₄ emissions from the underground log are essential. Using reforestation, permanent storage of the log, no CH₄ emission from the log, and using logging residues instead of coal, the LP can achieve reductions in GHG emissions of 121 tonnes of CO₂ per 100 m² of improvement area by replacing CDM.  相似文献   

The ecoresponsive genome of Daphnia pulex     

Colbourne JK  Pfrender ME  Gilbert D  Thomas WK  Tucker A  Oakley TH  Tokishita S  Aerts A  Arnold GJ  Basu MK  Bauer DJ  Cáceres CE  Carmel L  Casola C  Choi JH  Detter JC  Dong Q  Dusheyko S  Eads BD  Fröhlich T  Geiler-Samerotte KA  Gerlach D  Hatcher P  Jogdeo S  Krijgsveld J  Kriventseva EV  Kültz D  Laforsch C  Lindquist E  Lopez J  Manak JR  Muller J  Pangilinan J  Patwardhan RP  Pitluck S  Pritham EJ  Rechtsteiner A  Rho M  Rogozin IB  Sakarya O  Salamov A  Schaack S  Shapiro H  Shiga Y  Skalitzky C  Smith Z  Souvorov A  Sung W 《Science (New York, N.Y.)》2011,331(6017):555-561

We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200 megabases and contains at least 30,907 genes. The high gene count is a consequence of an elevated rate of gene duplication resulting in tandem gene clusters. More than a third of Daphnia's genes have no detectable homologs in any other available proteome, and the most amplified gene families are specific to the Daphnia lineage. The coexpansion of gene families interacting within metabolic pathways suggests that the maintenance of duplicated genes is not random, and the analysis of gene expression under different environmental conditions reveals that numerous paralogs acquire divergent expression patterns soon after duplication. Daphnia-specific genes, including many additional loci within sequenced regions that are otherwise devoid of annotations, are the most responsive genes to ecological challenges.  相似文献