Development and evaluation of an indirect enzyme-linked immunosorbent assay for detection of foot-and-mouth disease virus nonstructural protein antibody using a chemically synthesized 2B peptide as antigen.     

Toru Inoue  Satya Parida  David J Paton  Wilai Linchongsubongkoch  David Mackay  Yooni Oh  Dilok Aunpomma  Simon Gubbins  Takakiyo Saeki 《Journal of veterinary diagnostic investigation》2006,18(6):545-552

Forty peptides were synthesized corresponding to hydrophilic clusters of amino acids within the sequences of foot-and-mouth disease virus (FMDV) nonstructural proteins (NSP). Six peptides were studied in more detail and the most promising, a 2B peptide, was evaluated in enzyme-linked immunosorbent assay (ELISA) using sera from naive, vaccinated, and vaccinated-and-challenged cattle as well as bovine sera from field outbreaks. The performance of the new NSP peptide ELISA was compared to that of 4 commercial NSP ELISA kits. Antibody to 2B was detectable from the end of the first week to the second week after infection in most of the nonvaccinated animals and by the second to third week in vaccinated-and-challenged animals. The sensitivity of the 2B peptide ELISA was comparable to the 3ABC Ceditest (Ceditest FMDV-NS, Cedi Diagnostics B.V.; Chung et al., 2002). With some modification and further validation, this 2B test could be useful as a screening or conformational NSP test in postvaccination surveillance for FMD.  相似文献   

Evaluation of laboratory tests for SAT serotypes of foot-and-mouth disease virus with specimens collected from convalescent cattle in Zimbabwe     

Sammin DJ  Paton DJ  Parida S  Ferris NP  Hutchings GH  Reid SM  Shaw AE  Holmes C  Gibson D  Corteyn M  Knowles NJ  Valarcher JF  Hamblin PA  Fleming L  Gwaze G  Sumption KJ 《The Veterinary record》2007,160(19):647-654

  相似文献   

Identification of a diverse mini‐core panel of Indian rice germplasm based on genotyping using microsatellite markers          下载免费PDF全文

Kapil K. Tiwari  Anshuman Singh  Sasmita Pattnaik  Maninder Sandhu  Sukhdeep Kaur  Sourabh Jain  Sushma Tiwari  Shweta Mehrotra  Mahender Anumalla  Rashmita Samal  Jyoti Bhardwaj  Neha Dubey  Vikrant Sahu  Gayle A. Kharshing  Patu K. Zeliang  Kadiri Sreenivasan  Pankaj Kumar  Swarup K. Parida  Sevanthi V. A. Mithra  Vandana Rai  Wricha Tyagi  Pawan K. Agrawal  Atmakuri R. Rao  Arunava Pattanayak  Girish Chandel  Ashok K. Singh  Ishwari S. Bisht  Kangila V. Bhat  Gundimeda J. N. Rao  Jitendra P. Khurana  Nagendra K. Singh  Trilochan Mohapatra 《Plant Breeding》2015,134(2):164-171

Identification of a small core germplasm set representing the available genetic diversity is essential for its proper evaluation and subsequent utilization in rice improvement programmes. For constituting a small diverse mini‐core panel of Indian rice germplasm, a representative set of 6912 accessions drawn based on their geographic origin from the whole rice germplasm collection available in the National Gene Bank was genotyped using 36 microsatellite markers. Automated fragment analysis of amplicons yielded a total of 435 alleles, with an average 12.4 and range of 3–29 alleles per locus. Polymorphism information content (PIC) ranged from 0.08 (RGNMS190) to 0.86 (RM552) with an average of 0.528. Based on genotyping data, a mini‐core consisting of 98 genotypes was identified. Ninety‐four per cent of the alleles present in the core set were present in the mini‐core. The identified small but diverse panel will be useful for further intensive trait‐specific evaluation and utilization in allele mining.  相似文献   

Development of an appropriate procedure for estimation of RUSLE EI₃₀ index and preparation of erosivity maps for Pulau Penang in Peninsular Malaysia     

A. Shamshad  M.N. Azhari  M.H. Isa  W.M.A. Wan Hussin  B.P. Parida 《CATENA》2008,72(3):423-432

Pluviographic data at 15 min interval from 6 stations in Pulau Penang of Peninsular Malaysia were used to compute rainfall erosivity factor (R) for the revised universal soil loss equation (RUSLE). Three different modelling procedures were applied for the estimation of monthly rainfall erosivity (EI₃₀) values. While storm rainfall (P) and duration (D) data were used in the first approach, the second approach used monthly rainfall for days with rainfall ≥ 10 mm (rain₁₀) and monthly number of days with rainfall ≥ 10 (days₁₀). The third approach however used the Fournier index as the independent variable. Based on the root mean squared error (RMSE) and the percentage error (PE) criteria, models developed using the Fournier index approach was adjudged the best with an average PE value of 0.92 and an average RMSE value of 164.6. Further, this approach was extended to the development of a regional model. Using data from additional sixteen stations and the Fournier index based regional model, EI₃₀ values were computed for each month. ArcView GIS was used to generate monthly maps of EI₃₀ values and also annual rainfall erosivity (R). The rainfall erosivity factor (R) in the region was estimated to vary from 9000 to 14,000 MJ mm ha^− 1 h^− 1 year^− 1.  相似文献   

Endometrial transcript profile of progesterone‐regulated genes during early pregnancy of Water Buffalo (Bubalus bubalis)     

Naseer A. Baba  Manjit Panigrahi  Ankita D. Verma  Abdul Sadam  Sourabh Sulabh  Supriya Chhotaray  Subhashree Parida  Narayanan Krishnaswamy  Bharat Bhushan 《Reproduction in domestic animals》2019,54(1):100-107

Progesterone (P₄) plays a key role in the establishment and maintenance of pregnancy in most mammals. Unravelling the expression of progesterone‐regulated genes can expand the understanding of the embryonic mortality. Accordingly, we studied the relative mRNA expression of the P₄‐regulated genes in the buffalo. Uteri were collected from the abattoir and categorized into nonpregnant late luteal phase, stage I (28–38th days of gestation) and stage II (48–56th days of gestation) of pregnancy (n = 6/group). After extraction of total RNA from the endometrial tissues, we carried out qRT‐PCR for determining the relative mRNA expression of the P₄‐regulated genes using nonpregnant late luteal phase as calibrator group. The expression of LGALS3BP (essential for maternal recognition of pregnancy) gene was found to be significantly upregulated (p < 0.05), while MUC1 (important for embryo attachment) gene was downregulated in stage I and II of pregnancy. We observed no significant change in the expression of LGALS1, LGALS9 and CTSL genes. The SLC5A11 and SLC2A1 genes (involved in the transport of glucose to endometrium) in early pregnancy were upregulated in the pregnancy stage I (p < 0.05) relative to nonpregnant late luteal phase. The CST3 gene was significantly upregulated in pregnancy stage II (p < 0.01). These results provide molecular insights into the specific pathways involved in foeto‐maternal communication during early pregnancy in buffaloes.  相似文献   

Bovine serum panel for evaluating foot-and-mouth disease virus nonstructural protein antibody tests.     

Satya Parida  Lucy Fleming  Debi Gibson  Pip A Hamblin  Santina Grazioli  Emiliana Brocchi  David J Paton 《Journal of veterinary diagnostic investigation》2007,19(5):539-544

A panel of 36 sera has been assembled from experimental cattle that had been infected by inoculation or contact exposure with 4 serotypes of foot-and-mouth disease virus (FMDV) with or without prior vaccination. Virus replication and persistence had been characterized in all of the animals. The proportion of the sera scored positive by 5 tests for antibodies to the nonstructural proteins of FMDV varied, suggesting that the panel can discriminate between the sensitivity with which such tests are able to identify infected cattle. Use of this panel will help in assessment of new tests and quality control of existing methods.  相似文献   

Peste des petits ruminants: a suitable candidate for eradication?   总被引：2，自引：0，他引：2  

Baron MD  Parida S  Oura CA 《The Veterinary record》2011,169(1):16-21

This year will see the final announcement, accompanied by much justifiable celebration, of the eradication from the wild of rinderpest, the 'cattle plague' that has been with us for so many centuries. The only known rinderpest virus (RPV) remaining is in a relatively small number of laboratories around the world, and in the stockpiles of vaccine held on a precautionary basis. As we mark this achievement, only the second virus ever eradicated through human intervention, it seems a good time to look at rinderpest's less famous cousin, peste des petits ruminants ('the plague of small ruminants') and assess if it should, and could, also be targeted for global eradication.  相似文献   

Methane emission from flooded rice fields under irrigated conditions   总被引：11，自引：0，他引：11  

T. K. Adhya  Amarendra K. Rath  P. K. Gupta  V. R. Rao  S. N. Das  K. M. Parida  D. C. Parashar  N. Sethunathan 《Biology and Fertility of Soils》1994,18(3):245-248

In a study on CH₄ emission from flooded rice fields under irrigated conditions, fields planted with rice emitted more methane than unplanted fields. The CH₄ efflux in planted plots varied with the rice variety and growth stage and ranged from 4 to 26 mg h^-1m^-2. During the reproductive stage of the rice plants, CH₄ emission was high and the oxidation power of rice roots, in terms of -naphthylamine oxidation, was very low. The CH₄ emission reached a maximum at midday and declined to minimum levels at midnight, irrespective of the rice variety. The peak CH₄ emission at midday was associated with higher solar radiation and higher soil/water temperature.  相似文献   

PCR-RFLP analysis of chloroplast gene regions in Cajanus (Leguminosae) and allied genera     

Mukkamala Lakshmi  Padmanabhan Senthilkumar  Madasamy Parani  Mundaya Narayanan Jithesh  Ajay Kumar Parida 《Euphytica》2000,116(3):243-250

Twenty-eight species belonging to five genera of the sub tribe Cajaninae; viz., Cajanus(15 species), Rhynchosia (10 species), Dunbaria, Flemingia and Paracalyx were analysed for variations in four chloroplast generegions, rbcL, trnS-psbC, 16S and trnL-UAA. The four chloroplast gene regions were amplified with specific primers and subsequently digested with 15 restriction enzymes. Rhynchosia did not show any inter-specific differences in the four gene regions for any of the enzymes used. In Cajanus, the inter-specific PCR-RFLP profile of the four gene regions for all the enzymes were similar except for the Pst I digests of trnS-psbC gene region. At inter-generic level, rbcL gene region did not show polymorphism with any of the enzymes used; while in trnS-psbC gene region polymorphism was observed only with Pst I and Hae III digestions. Inter-generic PCR-RFLP of 16S did not reveal any variation. The trnL-UAA gene region had restriction site only forEcoR I in which Cajanus and Rhynchosia showed similar profiles while Dunbaria showed a different profile. The trnL-UAA gene region in Paracalyx and Flemingia did not have restriction site for this enzyme. Despite the analyses of four gene regions using 15 restriction enzymes, differentiation at genus level could not be obtained. These observations indicated limited divergence of the chloroplast genome among the four genera of the sub-tribe Cajaninae suggesting close relationships of the taxa. This revised version was published online in July 2006 with corrections to the Cover Date.  相似文献   

Diversity of Sodium Transporter HKT1;5 in Genus Oryza     

Shalini Pulipati  Suji Somasundaram  Nitika Rana  Kavitha Kumaresan  Mohamed Shafi  Peter Civ  &#x  Gothandapani Sellamuthu  Deepa Jaganathan  Prasanna Venkatesan Ramaravi  S. Punitha  Kalaimani Raju  Shrikant S. Mantri  R. Sowdhamini  Ajay Parida  Gayatri Venkataraman 《水稻科学》2022,29(1):31-46

Asian cultivated rice shows allelic variation in sodium transporter, OsHKT1;5, correlating with shoot sodium exclusion (salinity tolerance). These changes map to intra/extracellularly-oriented loops that occur between four transmembrane-P loop-transmembrane (MPM) motifs in OsHKT1;5. HKT1;5 sequences from more recently evolved Oryza species (O. sativa/O. officinalis complex species) contain two expansions that involve two intracellularly oriented loops/helical regions between MPM domains, potentially governing transport characteristics, while more ancestral HKT1;5 sequences have shorter intracellular loops. We compared homology models for homoeologous OcHKT1;5-K and OcHKT1;5-L from halophytic O. coarctata to identify complementary amino acid residues in OcHKT1;5-L that potentially enhance affinity for Na⁺. Using haplotyping, we showed that Asian cultivated rice accessions only have a fraction of HKT1;5 diversity available in progenitor wild rice species (O. nivara and O. rufipogon). Progenitor HKT1;5 haplotypes can thus be used as novel potential donors for enhancing cultivated rice salinity tolerance. Within Asian rice accessions, 10 non-synonymous HKT1;5 haplotypic groups occur. More HKT1;5 haplotypic diversities occur in cultivated indica gene pool compared to japonica. Predominant Haplotypes 2 and 10 occur in mutually exclusive japonica and indica groups, corresponding to haplotypes in O. sativa salt-sensitive and salt-tolerant landraces, respectively. This distinct haplotype partitioning may have originated in separate ancestral gene pools of indica and japonica, or from different haplotypes selected during domestication. Predominance of specific HKT1;5 haplotypes within the 3 000 rice dataset may relate to eco-physiological fitness in specific geo-climatic and/or edaphic contexts.  相似文献