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Minimal Set of Metabolic Pathways Suggested from the Genome of Onion Yellows Phytoplasma 总被引：1，自引：0，他引：1
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Akihiko Yatsu Tomowo Watanabe Junta Mori Kazuya Nagasawa Yukimasa Ishida Toshimi Meguro Yoshihiko Kamei & Yasunori Sakurai 《Fisheries Oceanography》2000,9(2):163-170
Variability in catch-per-unit-effort (CPUE) was examined for the autumn cohort of Ommastrephes bartramii collected with research driftnets during 1979–1998 along five longitudinal transects passing through the Subarctic, Transitional and Subtropical Domains in the North Pacific. CPUE was generally low during the period of intensive commercial driftnet fishing (1980–1992) and increased following the 1992 moratorium on the use of large-scale driftnets. However, CPUE levels were low for the cohorts hatched in 1992 and 1996 (captured in subsequent years owing to a one-year life of O. bartramii ) that experienced low sea surface temperatures from hatching to recruitment. Among similar-aged squid collected from 180° and 179°30'W in June, mantle lengths were significantly greater in 1997 than during 1995–96. These findings suggest that the driftnet fishery and sea surface temperatures from hatching to recruitment strongly affected stock abundance and possibly growth. 相似文献
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Yoshida H Mizukoshi T Hirayama K Miyano H 《Journal of agricultural and food chemistry》2007,55(3):551-560
A method for the comprehensive analysis of hydrophilic metabolites, based on a combination of high-performance liquid chromatography and mass spectrometry, is described. We evaluated three types of stationary phases to achieve the separation of highly hydrophilic metabolites. Good chromatographic retention and separation of these metabolites were achieved on a pentafluorophenylpropyl-bonded silica column with gradient elution, using 0.1% aqueous formic acid and acetonitrile as the mobile phase. The optimized conditions allowed the comprehensive determination of the standard 49 kinds of amino acids, 6 kinds of amines, 45 kinds of organic acids, 18 kinds of nucleic bases, 5 kinds of nucleosides, and 14 kinds of nucleotides, and then the linearity, dynamic range, detection limit, and precision of the retention time and the peak area were validated. We applied this method for the targeted analysis of the components in soy sauce. The results from the quantitative determination of amino acids were compared to those obtained with an amino acid analyzer, and the accuracy was in the range between 85 and 119%. The accuracy of other detected components was confirmed to be 105-133% by the recovery rate after the addition of standard compounds. We also applied the method for the nontargeted metabolic profiling of the components in several kinds of soy sauces with the principal component analysis. They were classified by the manufacturing methods, and the components that corresponded to the differences were identified. This method could be useful for the targeted analysis of hydrophilic metabolites as well as their nontargeted metabolic profiling. 相似文献
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Application of single‐step genomic best linear unbiased prediction with a multiple‐lactation random regression test‐day model for Japanese Holsteins 
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下载免费PDF全文 Toshimi Baba Yusaku Gotoh Satoshi Yamaguchi Satoshi Nakagawa Hayato Abe Yutaka Masuda Takayoshi Kawahara 《Animal Science Journal》2017,88(8):1226-1231
This study aimed to evaluate a validation reliability of single‐step genomic best linear unbiased prediction (ssGBLUP) with a multiple‐lactation random regression test‐day model and investigate an effect of adding genotyped cows on the reliability. Two data sets for test‐day records from the first three lactations were used: full data from February 1975 to December 2015 (60 850 534 records from 2 853 810 cows) and reduced data cut off in 2011 (53 091 066 records from 2 502 307 cows). We used marker genotypes of 4480 bulls and 608 cows. Genomic enhanced breeding values (GEBV) of 305‐day milk yield in all the lactations were estimated for at least 535 young bulls using two marker data sets: bull genotypes only and both bulls and cows genotypes. The realized reliability (R2) from linear regression analysis was used as an indicator of validation reliability. Using only genotyped bulls, R2 was ranged from 0.41 to 0.46 and it was always higher than parent averages. The very similar R2 were observed when genotyped cows were added. An application of ssGBLUP to a multiple‐lactation random regression model is feasible and adding a limited number of genotyped cows has no significant effect on reliability of GEBV for genotyped bulls. 相似文献
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Naohiko OKUMURA Toshimi MATSUMOTO Noriyuki HAMASIMA Takashi AWATA 《Animal Science Journal》2008,79(3):303-313
Here, we report the variability in the KIT tyrosine kinase receptor and its ligand KITLG genes by determining single nucleotide polymorphisms (SNPs) in 384 individuals including 11 pig breeds, two synthetic-line cross pigs, two cross breeds, and one Japanese wild boar. SNPs and indels within the coding sequence regions of KITLG and KIT and their 5'-flanking regions were detected by aligning sequences from eight pigs, and subsequently the SNPs were genotyped using matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI TOF-MS). Principal component analysis using allele frequencies in the SNP locus showed a distant relationship between Asian and Euro-American pig groups, except for Berkshire and Tokyo X breeds. These breeds were located within the mid-portion of the distribution in the first principal component. The Hampshire breed was distant from the other pig groups on the axis of the second principal component. Haplotype frequencies that were deduced using non-synonymous substitutions of the KIT gene revealed the uniqueness of Landrace, Large White, Middle White, and three-way cross pigs (LWD) and of the Hampshire breed. On the other hand, the haplotypes of KITLG and KIT detected in the Berkshire breed were prevalent in Asian pig groups. This tendency is different from that observed in other Euro-American pig breeds. 相似文献
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Satoshi Yamaguchi Yutaka Masuda Satoshi Nakagawa Hayato Abe Yusaku Gotoh Toshimi Baba Takayoshi Kawahara 《Animal Science Journal》2019,90(8):915-923
The objectives of this study were to estimate the heritability of mastitis incidence and genetic correlations between the mastitis and the somatic cell score (SCS) statistics, and to compare the practicability between different models. We used test‐day records with the mastitis incidence and SCS collected from Holstein cows calving from 1988 to 2015 in Hokkaido, Japan. As indicators of mastitis, the average SCS (avSCS), the standard deviation of SCS (sdSCS), and the maximum SCS (maxSCS) were calculated using test‐day records up to the first 305 days in milk within a lactation. We compared a four‐trait repeatability animal model (MTRP) with a four‐trait multiple‐lactation animal model (MTML). The heritability for mastitis was equal to or lower than 0.05 in all the models. Genetic correlations between lactations with MTML within the same trait were positive and close to 1. With MTRP, the estimated genetic correlations of the mastitis incidence with avSCS, sdSCS, and maxSCS were 0.66, 0.79, and 0.82, respectively. A joint evaluation with SCS statistics is expected to give an extra reliability for mastitis because of high and positive genetic correlations among the traits. 相似文献
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Kuroda M Kato Y Yamazaki J Kai Y Mizukoshi T Miyano H Eto Y 《Journal of agricultural and food chemistry》2012,60(29):7291-7296
It was recently reported that kokumi substances such as glutathione are perceived through the calcium-sensing receptor (CaSR). In addition, screening by the CaSR assay and sensory evaluation revealed that γ-glutamyl-valyl-glycine (γ-Glu-Val-Gly) was a potent kokumi peptide. In this study, the quantities of γ-Glu-Val-Gly in various commercial fish sauces originating from Vietnam (Nuoc Mum), Thailand (Nampra), China (Yu-lu), Korea, Japan (Shottsuru and Ikanago-shoyu), and Italy (Garum) were investigated using a LC/MS/MS method followed by derivatization with 6-aminoquinoyl-N-hydroxysuccinimidyl-carbamate (AQC). The analyses revealed γ-Glu-Val-Gly at concentrations ranging from 0.04 to 1.26 mg/dL, indicating that γ-Glu-Val-Gly is widely distributed among various commercial fish sauces. 相似文献
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Summary The study was carried out in order to determine the effects of CCA on the pyrolysis and the combustion toxicity of wood. The results from CCA treated wood are summarized as follows: 1. CCA accelerated the beginning of pyrolysis of wood, increased the activation energies for the weight loss by pyrolysis, and increased the char yields in both air and helium. 2. Almost all the original amounts of cromium and copper were retained in the ash while some of the arsenic evolved into the gas phase, which increased with increasing temperature and air supply. 3. The combustion toxicity of wood samples was affected more by the sample density and CO concentration than CCA. It is concluded that for minimizing gaseous toxicants from arsenic, CCA treated wood must be burned at low temperatures with a reduced air supply. 相似文献