Methanogen activity in relation to water table level in two boreal fens     

Mirkka Kotiaho  Hannu Fritze  Päivi Merilä  Heli Juottonen  Mirva Leppälä  Jukka Laine  Raija Laiho  Kim Yrjälä  Eeva-Stiina Tuittila 《Biology and Fertility of Soils》2010,46(6):567-575

We studied methanogen activity—measured by in vitro methane production potential and by detection of the messenger RNA (mRNA) of a functional gene—in two boreal fens under high and deep water table (WT) level conditions resulting from a rainy growing season and a dry growing season. The depth of the highest CH₄-producing layers differed between the years. In the wet year, the highest CH₄ production rate was around 20 cm below the mean WT. In the dry year, the highest rates were measured close to the peat surface, well above the mean WT. The distribution of activity in the peat profiles of the two fens appeared to be site specific. Under deep-WT conditions, CH₄ production potential was generally lower than that under high-WT conditions. Detection of the mRNA of the methanogen-specific mcrA gene indicated in situ methanogenesis in both water-saturated peat (below the WT) and unsaturated peat (above the WT). Analyses of DNA-derived and mRNA-derived methanogen community structures showed greater similarity between those two in water-saturated peat than in unsaturated peat. This suggested that favorable conditions promoted the activity of most members in methanogen communities, but unfavorable conditions showed differences between distinct community members in adaptation to adverse conditions.  相似文献   

High prevalence of antibiotic resistance in pathogenic Escherichia coli from large- and small-scale poultry farms in Bangladesh     

Hasan B  Faruque R  Drobni M  Waldenström J  Sadique A  Ahmed KU  Islam Z  Parvez MB  Olsen B  Alam M 《Avian diseases》2011,55(4):689-692

Antibiotic resistance in avian bacterial pathogens is a common problem in the Bangladesh poultry industry. The aim of the present study was to provide information on the present status of antibiotic resistance patterns in avian pathogenic Escherichia coli in Bangladesh. Of 279 dead or sick poultry of different ages, 101 pathogenic E coli strains isolated from broilers and layer hens with colibacillosis infections were screened to determine phenotypic expression of antimicrobial resistance against 13 antibiotics used in both veterinary and human medicine in Bangladesh. Of 101 pathogenic E. coli isolates, more than 55% were resistant to at least one or more of the tested compounds, and 36.6% of the isolates showed multiple-drug-resistant phenotypes. The most common resistances observed were against tetracycline (45.5%), trimethoprim-sulphamethoxazole (26.7%), nalidixic acid (25.7%), ampicillin (25.7%), and streptomycin (20.8%). Resistance to ciprofloxacin (12.9%), chlormaphenicol (8.9%), nitrofurantoin (2%), and gentamicin (2%) was also observed, and none of the isolates were resistant to tigecycline as well as extended spectrum beta-lactamase (ESBL) producers. One isolate was resistant to cefuroxime (1%), cefadroxil (1%), and mecillinam (1%) but was not an ESBL producer. Resistance rates, although significant in Bangladeshi isolates, were found to be lower than those reported for avian isolates from the Republic of Korea and clinical, avian, and environmental isolates from Bangladesh. The high level of antibiotic resistance in avian pathogens from Bangladesh is worrisome and indicates that widespread use of antibiotics as feed additives for growth promotion and disease prevention could have negative implications for human and animal health and the environment.  相似文献   

N form–dependent growth retardation of Arabidopsis thaliana seedlings as revealed from physiological and microarray studies     

Anne Hoffmann  Sabine Milde  Christine Desel  Anja Hümpel  Hartmut Kaiser  Enno Hammes  Mirva Piippo  Arto Soitamo  Eva‐Mari Aro  Jóska Gerendás  Burkhard Sattelmacher  Ulf‐Peter Hansen 《植物养料与土壤学杂志》2007,170(1):87-97

Ammonium (NH ) nutrition causes retardation of growth in many plant species. In Arabidopsis grown with NH as the sole N source, growth retardation occurs already at early stages before photosynthesis has come to its full power. In order to describe the peculiarities of these retarded plants, they were compared with nitrate (NO )‐grown plants of the same age of 15 d. Photosynthetic activity as measured by CO₂ uptake per unit chlorophyll is half as high in NH ‐grown seedlings as in NO ‐grown ones. This finding is confirmed by the analysis of chlorophyll fluorescence. Chloroplasts of NO ‐grown, but not of NH ‐grown, seedlings show starch deposits after 5 h of illumination with 40 μmol m^–2 s^–1. Gene‐expression analysis based on cDNA microarray and on Northern blots provide a clue about the biochemical background. After the first 2 weeks of growth, it seems that NO ‐grown seedlings subsist mainly on normal photosynthesis, whereas NH ‐grown seedlings still use lipids from the seeds stored in oleosomes. Corresponding to this observation, the mRNAs for enzymes of β‐oxidation are more strongly expressed in NH ‐grown seedlings. Different carbohydrate sources for sucrose synthesis are indicated by different gene expression. Higher gene expression of fructose bisphosphate aldolase (cytosolic isoform) in NO ‐grown seedlings indicates the dependence on photosynthesis, whereas a higher gene expression of PEP carboxykinase in NH ‐grown seedlings points to a prominent role of β‐oxidation of storage lipids still present.  相似文献