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Alejandra M. Toro Ospina Amanda Marchi Maiorano Rogrio A. Curi Guilherme L. Pereira Maria Eugenia Zerlotti‐Mercadante Joslaine Noely dos Santos Gonalves Cyrillo Rusbel R. Aspilcueta‐Borquis Josineudson A. II de V. Silva 《Reproduction in domestic animals》2019,54(12):1524-1531
Linkage disequilibrium (LD) plays an important role in genomic selection and mapping of quantitative trait loci (QTL). This study investigated the pattern of LD and effective population size (Ne) in Gir cattle selected for yearling weight. For this purpose, 173 animals with imputed genotypes (from 18 animals genotyped with the Illumina BovineHD BeadChip and 155 animals genotyped with the Bovine LDv4 panel) were analysed. The LD was evaluated at distances of 25–50 kb, 50–100 kb, 100–500 kb and 0.5–1 Mb. The Ne was estimated based on 5 past generations. The r2 values (a measure of LD) were, respectively, .35, .29, .18 and .032 for the distances evaluated. The LD estimates decreased with increasing distance of SNP pairs and LD persisted up to a distance of 100 kb (r2 = .29). The Ne was greater in generations 4 and 5 (24 and 30 animals, respectively) and declined drastically after the last generation (12 animals). The results showed high levels of LD and low Ne, which were probably due to the loss of genetic variability as a consequence of the structure of the Gir population studied. 相似文献
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PB Fernandes KO Marques FR de Araujo Neto DP de Oliveira NA Hurtado‐Lugo RR Aspilcueta‐Borquis H Tonhati 《Reproduction in domestic animals》2016,51(3):428-434
Because of the importance of reproduction in stock breeding systems, it is necessary to find selection criteria that increase reproductive efficiency. The aim of this study was to estimate genetic parameters for the probability of conception on first service (PROB) in Murrah heifers, and its association with other traits of economic interest [age at first calving (AFC), service period, calving interval and milk yield at 270 days], with the purpose of evaluating their use as selection criteria. Reproductive information and first lactation records of 1200 Murrah heifers were used to perform two‐trait analyses between PROB and the other characteristics. Bayesian inference was used to estimate the variance components, considering PROB as threshold and the other as linear factors. The results demonstrate that this trait has heritability of 0.15, indicating the possibility of a genetic gain by using it for selection. With respect to the genetic correlation estimates, the only high‐magnitude association was with AFC (?0.899), which is the current criterion indicating sexual precocity of females. In the light of the parameters estimated, the first‐service pregnancy rate is an alternative for indication of sexual precocity, although presenting a smaller genetic gain than the current standard AFC. Nevertheless, additional research should be conducted regarding this trait to assess the economic importance of its use in dairy buffalo production systems. 相似文献
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Study of the effect of genotype–environment interaction on age at first calving and production traits in Nellore cattle using multi‐trait reaction norms and Bayesian inference 
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下载免费PDF全文 Francisco Ribeiro de Araujo Neto Newton Tamassia Pegolo Rusbel Raul Aspilcueta‐Borquis Matilde Conceição Pessoa Alexandre Bonifácio Raysildo Barbosa Lobo Henrique Nunes de Oliveira 《Animal Science Journal》2018,89(7):939-945
This study investigated the effects of genotype–environment interaction on yearling weight, age at first calving and post‐weaning weight gain in Nellore cattle using multi‐trait reaction norm models. The environmental gradient was defined as a function of the mean yearling weight of the contemporary groups. A first‐order random regression sire model with four classes of residual variance was used in the analyses and Bayesian methods were applied to estimate the (co)variance components. The heritability estimates ranged from 0.284 to 0.547, 0.222 to 0.316 and 0.256 to 0.522 for yearling weight, age at first calving and post‐weaning weight gain, respectively. The lowest genetic correlations between environment groups for each trait were 0.38, 0.02 and 0.04 for yearling weight, age at first calving and post‐weaning weight gain, respectively. Differences in the correlation estimates were observed between traits in the same environments, with the magnitude of the estimates tending toward zero as the environment improved. The results highlight the importance of including genotype–environment interactions in genetic evaluation programs considering the differences observed between environmental groups not only in terms of heritability, but also of genetic correlations. 相似文献
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ST Rolim Filho HFL Ribeiro GMF de Camargo DF Cardoso RR Aspilcueta‐Borquis H Tonhati KB Nunes WG Vale EM Barbosa KC de Sousa 《Reproduction in domestic animals》2013,48(5):705-709
The osteopontin gene may influence the fertility of water buffaloes because it is a protein present in sperm. The aim of this work was to identify polymorphisms in this gene and associate them with fertility parameters of animals kept under extensive grazing. A total of 306 male buffaloes older than 18 months, from two farms, one in the state of Amapá and the other in the state of Pará, Brazil were used in the study. Seven SNPs were identified in the regions studied. The polymorphisms were in gene positions 1478, 1513 and 1611 in the region 5′upstrem and positions 6690, 6737, 6925 and 6952 in the region amplified in intron 5. The SNPs were associated with the traits, namely scrotal circumference, scrotal volume, sperm motility, sperm concentration and sperm pathology. There were significant SNPs (p < 0.05) for all the traits. The SNP 6690 was significant for scrotal circumference, sperm concentration, sperm motility and sperm pathology and the SNP 6737 for scrotal volume. The genotype AA of SNP 6690 presented the highest averages for scrotal circumference, sperm concentration and motility and the lowest total number of sperm pathologies. For the scrotal volume trait, the animals with the largest volume were correlated with the presence of the genotype GG of SNP 6737. These results indicate a significance of the osteopontin gene as it seems to exert a substantial influence on the semen production traits of male buffaloes. 相似文献
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Genotype–environment interaction for age at first calving in buffaloes,using the reaction norm model
Gabriela Rodrigues Freitas Naudin Alejandro Hurtado‐Lugo Daniel Jordan de Abreu dos Santos Rusbel Raul Aspilcueta Borquis Newton Tamassia Pegolo Humberto Tonhati Francisco Ribeiro de Araújo Neto 《Reproduction in domestic animals》2019,54(4):727-732
The objective of this study was to evaluate the genotype–environment interaction effect on age at first calving in buffaloes. The records were analysed using two approaches: (a) standard animal model and (b) reaction norm model. For the reaction norm analysis, two environmental gradients were formed, using age of first calving or milk yield group contemporary average. The results showed differences in the heritability estimates when using the two approaches. The reaction norm model indicated high heritability in more favourable environments and low magnitude genetic correlations between extreme environments. Based on our findings, we verified the significance of the genotype–environment interaction effect on age at first calving in buffaloes. 相似文献
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R.C. Sesana A.B. Bignardi R.R.A. Borquis L. El Faro F. Baldi L.G. Albuquerque H. Tonhati 《Zeitschrift für Tierzüchtung und Züchtungsbiologie》2010,127(5):369-376
The objective of this work was to estimate covariance functions for additive genetic and permanent environmental effects and, subsequently, to obtain genetic parameters for buffalo’s test‐day milk production using random regression models on Legendre polynomials (LPs). A total of 17 935 test‐day milk yield (TDMY) from 1433 first lactations of Murrah buffaloes, calving from 1985 to 2005 and belonging to 12 herds located in São Paulo state, Brazil, were analysed. Contemporary groups (CGs) were defined by herd, year and month of milk test. Residual variances were modelled through variance functions, from second to fourth order and also by a step function with 1, 4, 6, 22 and 42 classes. The model of analyses included the fixed effect of CGs, number of milking, age of cow at calving as a covariable (linear and quadratic) and the mean trend of the population. As random effects were included the additive genetic and permanent environmental effects. The additive genetic and permanent environmental random effects were modelled by LP of days in milk from quadratic to seventh degree polynomial functions. The model with additive genetic and animal permanent environmental effects adjusted by quintic and sixth order LP, respectively, and residual variance modelled through a step function with six classes was the most adequate model to describe the covariance structure of the data. Heritability estimates decreased from 0.44 (first week) to 0.18 (fourth week). Unexpected negative genetic correlation estimates were obtained between TDMY records at first weeks with records from middle to the end of lactation, being the values varied from ?0.07 (second with eighth week) to ?0.34 (1st with 42nd week). TDMY heritability estimates were moderate in the course of the lactation, suggesting that this trait could be applied as selection criteria in milking buffaloes. 相似文献
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Flavia Rita Ferreira Francisco Ribeiro de Araujo Neto Henrique Barbosa Borges Rusbel Raul Aspilcueta‐Borquis Naudim Alejandro Hurtado‐Lugo Henrique Nunes de Oliveira Lucia Galvão de Albuquerque Humberto Tonhati 《Animal Science Journal》2017,88(8):1212-1219
This article reports genetic analysis of the weight at different ages of Murrah water buffaloes, using random regression models (RRM). Models ranging from third to sixth order polynomial were used to describe direct genetic and animal permanent environmental effects. Contemporary group was included as a fixed effect, and a cubic polynomial was used to model the mean curve of the population. The residual was modeled considering a log‐linear function. Two models were selected for study of genetic parameters. The first model included third and sixth order polynomials for direct genetic and animal permanent environmental effects (M36). The second model included sixth order polynomials for all random effects (M66). The estimates of heritability varied from 0.16 + 0.04 (44 days) to 0.38 + 0.04 (568 days) for model M36 and from 0.16 + 0.05 (33 days) to 0.42 + 0.05 (600 days) for model M66. Regarding estimates of the correlation for all effects, the magnitude tended to decline with the increase of the time span between measurements. These results indicate that the species has potential for genetic selection based on weight at different ages, since we found favorable genetic variability within the herd, with selection likely to be more efficient at ages near 600 days. 相似文献
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Luiz Eduardo Cruz dos Santos Correia Ricardo António da Silva Faria Matheus Henrique Vargas de Oliveira Rusbel Raúl Aspilcueta Borquis Rogério Abdallah Curi Josineudson Augusto II de Vasconcelos Silva 《Reproduction in domestic animals》2020,55(10):1355-1361
The aim of this study was to estimate the (co)variance components and breeding values for birthweight (BW) in Nellore cattle by considering or not identical weights that exhibit a high frequency within the contemporary group (CG). A total of 175,258 BW records of Nellore cattle born between 2002 and 2018 were used. The CG was formed by farm, year of birth, sex and feeding regime at birth. CGs with more than 16% of identical BW values were eliminated, generating a data file called BWd. Another file was created without removing these animals (BWt). A mixed linear model was used for statistical analysis, which included fixed and random effects. In both data files analysed, single-trait analysis was performed by Bayesian inference. The mean direct and maternal heritability for BW and the correlation between direct and maternal effects were 0.27, 0.07 and −0.07 for BWt, respectively, and 0.30, 0.093 and −0.07 for BWd. This method should affect the estimation of genetic merits of animals for BW, providing greater safety in the choice of sires. 相似文献
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