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Emin Zeki Başkent Ali İhsan Kadıoğulları 《Scandinavian Journal of Forest Research》2014,29(7):121-131
Decision support systems (DSSs) are indispensable tools in preparing a forest management plan for a better combination of multiple forest values. This study attempted to develop and explain a stand-based forest management DSS (Ecosystem-based multiple-use forest planning [ETÇAP]) comprising a traditional simulation, linear programming (LP), metaheuristics and geographic information system. The model consists of five submodels; traditional management approach to handle inventory data, an empirical growth and yield model, a simulation to conceptualize management actions, a LP technique to optimize resource allocation and a simulated annealing approach to directly create a spatially feasible harvest schedule. The ETÇAP model has been implemented in a comparative two case study areas; Denizli–Honaz and Akseki–Ibrad?. Both simulation and optimization models outperformed to the traditional management plan. The periodical change of growing stock, allowable cuts, carbon sequestration and water production are used as performance indicators. The results showed that more amount of wood could be harvested over time compared to traditional level of harvesting. It could be concluded that various management strategies allowed managers to stimulate more decision options for better outputs through intertemporal trade-offs of management interventions as the model provided tools to quantify forest dynamics over time and space. Challenges exist to establish the functional relationships between forest structure and values for better quantification and integration into the management plans. 相似文献
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Akcay E Reilas T Andersson M Katila T 《Journal of veterinary medicine. A, Physiology, pathology, clinical medicine》2006,53(9):481-485
This study aimed to evaluate stallion sperm survival after 24 h of cooled storage in the presence of seminal plasma (SP) derived from the sperm-rich fractions (SRF) or sperm-poor fractions(SPF) of the ejaculate, without SP, or in the presence of SP from other stallions. Ejaculates were collected from four stallions using an automated phantom, which separated the semen into five cups. Centrifuged and washed spermatozoa from cup 2 (SRF) were mixed with skim milk extender to a concentration of 100 x 10(6) sperm/ml and then 1:1 (v/v) with SP from the stallion's own or another stallions' second (SP-SRF) or last cup (SP-SPF). Skim milk extender (K) and skim milk extender supplemented with modified Tyrode's medium (KMT) were used as control treatments. After a 24-h storage period in a transport container, spermatozoa were evaluated for motion characteristics and plasma membrane integrity by calcein acetoxymethyl (AM)/propidium iodide staining. The percentage of spermatozoa with intact plasma membranes after storage was lower in SP-SRF than in SP-SPF, and the highest in K (P < 0.05). Progressive motility (PMOT) was lower for sperm stored in SP-SRF than for sperm stored in SP-SPF (P < 0.05), but there was no significant difference in total motility (TMOT). Sperm stored in KMT (P < 0.05) registered the highest TMOT and PMOT percentages. Osmolarity was significantly higher and pH lower in K than in KMT or SP. Treatment with SP-SPF from three stallions benefited the PMOT of sperm from one stallion. These preliminary findings suggest that SP from SRFs may be more harmful during storage than SP from SPFs. Removal of SP improves sperm survival in KMT extender, and exchanging SP between stallions seems to influence sperm survival. 相似文献
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Yahya?Emin?Demirci Cihan?Inan Asl?han?Günel Dilara?Maytalman Zafer?Mert A.?Tar?k?Baykal ?enay?Vural?Korkut Nazl??Arda Semra?Hasan?ebiEmail authorView author&#;s OrcID profile 《European journal of plant pathology / European Foundation for Plant Pathology》2016,145(4):941-962
Over the last decade, comparative molecular profiling studies between compatible and incompatible plant-pathogen interactions have shown that susceptible response of the host to a pathogen requires factors that promote disease development. In this study, we examined proteome profiles during a compatible interaction between wheat and stripe rust. A 2D-LC system (ProteomeLab PF2D) was used for protein separation and to compare the proteome from infected and control samples. More than 700 protein peaks at each time point were compared between pathogen- and mock-inoculated samples. Selected proteins, with significant differences in abundance were identified by nanoLC-ESI- MS/MS and generated spectra were searched against the wheat protein databases from UniProt, and NCBI and the Puccinia database from The Broad Institute. In total, the identified proteins comprised of 62 % wheat and 38 % Pst proteins. All identified proteins were searched by bioinformatics-based algorithms to detect their subcellular localization and signal peptide motifs which have the potential to catch the candidate effector proteins. The wheat proteins were classified based on their function. Although a compatible interaction, many wheat proteins, such as antioxidants, PRs and cold-responsive proteins, are implicated in defense and stress tolerance. On the pathogen side, 64 proteins were identified, and included some important pathogenicity proteins that can play role in pathogen virulence and suppress the host defense. In addition, we discovered that nine proteins have a signal sequence and three of the hypothetical fungal proteins, PGTG_11681T0, PGTG_07231T0 and CBH50687.1, have been tentatively identified as candidate effectors. 相似文献
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Hatice Gulen Ahmet Ipek Sergul Ergin Emin Akcay Atilla Eris 《The Journal of Horticultural Science and Biotechnology》2013,88(5):427-431
SummaryThe characterisation of sweet cherry (Prunus avium L.) genetic resources in Turkey may help to increase their use in breeding programmes worldwide, as Turkey is the centre of origin of sweet cherry. Amplified fragment length polymorphism (AFLP) and simple sequence repeat (SSR) markers were therefore used to analyse genetic diversity among a total of 78 local and introduced sweet cherry cultivars. Four AFLP primer combinations, and six SSR primer pairs for sweet cherry were used for genetic diversity analysis. A genetic similarity matrix was calculated using the combined data from AFLP and SSR analyses with simple matching coefficient. Genetic similarities among the sweet cherry genotypes studied were higher than 42%. No two accessions had an identical AFLP and SSR marker profile, indicating that all 78 genotypes were unique. An UPGMA dendrogram, based on the similarity matrix, revealed 18 separate Groups at or above the 70% similarity level. While some Groups consisted of both introduced and local genotypes, other Groups had only local genotypes. This result suggests that there was broad genetic diversity among the local Turkish sweet cherry genotypes, which was not present in the introduced sweet cherry accessions. The genetic variation present in local Turkish sweet cherry genotypes may be useful for future breeding programmes. We found that the use of both SSR and AFLP marker systems was effective for distinguishing between genetically-close sweet cherry genotypes. These marker systems can be used to complement pomological and morphological markers during the characterisation and identification of sweet cherry genotypes. 相似文献
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Ali Tuğrul Akin Emel Öztürk Emin Kaymak Derya Karabulut Birkan Yakan 《Anatomia, histologia, embryologia》2021,50(6):908-917
Cancer is a lethal disease that is characterized by uncontrolled cell division and proliferation, and it results in death in many organisms. Doxorubicin (DOX) is a therapeutic agent used for treatment of many cancer types, but it induces serious hepatotoxicity. In this study, we aimed to determine possible hepato-therapeutic effects of thymoquinone (THQ) on DOX-induced hepatotoxicity in rats. Rats were divided into five groups (n = 8): Control, THQ (10 mg/kg/day/i.p for 14 days), Olive Oil (equal volume with THQ for 14 days), DOX (single dose, 15 mg/kg/i.p on 7th day) and DOX + THQ (10 mg/kg/day/i.p and DOX 15 mg/kg/i.p on 7th day). At the end of the experiment, liver tissues were extracted and evaluated histopathologically. eNOS, iNOS and Cas-3 immunostaining were performed to determine the expression levels. TUNEL method was used to determine apoptotic index. Furthermore, liver tissue total antioxidant status (TAS), total oxidant status (TOS), TNF-α and TGF-β levels were measured by ELISA assay. The DOX group showed histopathological deterioration compared to Control group. Moreover, apoptotic index, eNOS, iNOS and Cas-3 expressions increased in DOX group. While TAS level of the DOX group decreased, TOS level increased. TNF-α and TGF-β levels increased in DOX group. However, there was improvement in DOX + THQ group compared to DOX group. Moreover, apoptotic cell number, eNOS, iNOS and Cas-3 expressions decreased in DOX + THQ group compared to DOX group. We concluded that thymoquinone can be used as a phytotherapeutic for reducing DOX-induced liver damage. 相似文献
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Mustafa Cemek Mehmet Emin Büyükokuro?lu Fatih Aymelek 《Pesticide biochemistry and physiology》2010,98(1):9-18
The present study was designed to investigate the effects of vitamin E (vit E), selenium (Se) and vit E + Se against organophosphate (OP) toxicity in tissues’ trace and major element levels and erythrocyte antioxidant enzyme activities of rats. Trace and major element concentrations in the tissues were measured by inductively coupled plasma-optical emission spectroscopy. Erythrocyte antioxidant enzyme activities were studied by using spectrophotometer. Antioxidant enzyme activities such as superoxide dismutase, glutathione peroxidase and catalase increased in the fenthion-treated groups (control) more than that of sham group subjects. Heart and pectoral muscle tissue Se and Zn concentrations in the control group were higher than sham group. However, jejunum, kidney, liver and pancreas Se and Zn concentrations in the control group were found to be lower than those in the sham group. The Mn concentrations in the all of the tissues were lower in the control group when compared with the sham group. Brain, heart, jejunum, kidney and pancreas Fe concentrations and heart, jejunum, liver, pectoral muscle and pancreas Cu concentrations were found to be lower in the control group. The treatment of vit E, Se and vit E + Se were increased bio-element levels in the many tissue. In conclusion, the results of the present study demonstrate that the tissue trace and major element concentrations and enzymatic antioxidant system were significantly affected OP toxicity. Furthermore, we have shown an association between bio-elements and antioxidant enzymes in OP toxicity. In addition, administration of vit E, Se and vit E + Se might regulate some trace and major element levels in the many tissues. 相似文献
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Controlling spatial structure of forested landscapes: a case study towards landscape management 总被引：6，自引：0，他引：6
Emin Z. Baskent 《Landscape Ecology》1999,14(1):83-97