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Verticillium dahliae isolates from potato on the island of Hokkaido (potato isolates) and those belonging to pathotypes A (eggplant pathotype),
B (tomato pathotype) and C (sweet pepper pathotype) were divided into three distinct groups by RAPD and REP-PCR. The three
DNA groups I, II, III consisted of pathotypes A and C, pathotype B and potato isolates, respectively. The potato isolates
were assigned to pathotype A on the basis of pathogenicity. Another set of potato isolates was further collected from eight
potato cropping regions on Hokkaido to further examine the relationships among them in detail. Only one of these isolates
was identified as DNA group II, but all the others were classified as DNA group III. Isolates from daikon, eggplant, and melon
on Hokkaido also belonged to DNA group III. These results suggest that V. dahliae isolates from Hokkaido are unique at the DNA level and different from other pathotype A isolates in Japan.
Received 28 February 2000/ Accepted in revised form 6 November 2000 相似文献
2.
Saxena MK Singh VP Kumar AA Chaudhuri P Singh VP Shivachandra SB Biswas A Sharma B 《Veterinary research communications》2006,30(8):851-861
Repetitive extragenic palindromic sequence-based PCR (REP-PCR) was used to characterize 67 field isolates of Pasteurella multocida originating from different animal species and geographical regions of India. REP-PCR was found to be rapid and reproducible
(three repeats were done). These isolates yielded different 23 profiles which were clustered into eight groups. The discrimination
index was moderate (D value 0.83). Somatic and antigenic typing of the isolates did not reveal any correlation with REP-PCR profiles. There was
no host-specific, type-specific, region-specific or pathenogenicity-specific pattern. The REP profiles of isolates obtained
from wild animals were similar to those obtained from domestic animals. Two common bands were present in all the isolates
irrespective of somatic or antigenic types. The results were not comparable with earlier findings, which had shown high discrimination
index and correlation with disease presentation.
Saxena, M.K., Singh, V.P., Kumar, A.A., Chaudhuri, P., Singh, V.P., Shivachandra, S.B., Biswas, A. and Sharma, B., 2006. REP–PCR
analysis of Pasteurella multocida isolates from wild and domestic animals in India. Veterinary Research Communications, 30(8), 851–861 相似文献
3.
Brown fruit spot symptoms were observed on yellow Spanish melons ( Cucumis melo var. inodorus ) grown in greenhouses at Almeria in Spain. Nonsporing, motile, rod-shaped bacteria were isolated from diseased fruits, which on nutrient agar produced small yellow colonies. Two bacterial isolates, used for further investigations, were pathogenic on fruits but not on cotyledons of Spanish melon plants. They provoked disease symptoms similar to those observed in the greenhouse. Both isolates were Gram-negative, catalase-positive, weakly oxidase-positive and phenylalanine deaminase-negative. They hydrolysed esculin but not gelatin and they utilized glucose oxidatively. Fatty acid analysis revealed that both isolates belong to the genus Sphingomonas . In addition, 16S rDNA sequence analysis, performed on one isolate, demonstrated that it had a significant sequence similarity (more than 98%) with Sphingomonas pruni and Sphingomonas mali , nonphytopathogenic bacteria isolated from plants. Although enterobacterial repetitive intergenic consensus PCR and repetitive extragenic palindromic PCR seem to indicate that the Sphingomonas isolates from Spanish melon fruits may belong to a new species, DNA–DNA hydridization analysis is necessary to verify this hypothesis. 相似文献
4.
Parham J. A. Deng S. P. Da H. N. Sun H. Y. Raun W. R. 《Biology and Fertility of Soils》2003,38(4):209-215
Studies were conducted to evaluate microbial populations and community structures in soils under different management systems in a long-term continuous winter wheat experiment. These soils had been treated with cattle manure for over a century, and P, NP, NPK, or NPK plus lime for over 70 years. Cattle manure application promoted the growth of bacteria, but not fungi, when compared with the control soil. Application of chemical fertilizers enriched the K-strategist bacterial community, while application of manure enriched both r- and K-strategists. DNA recovered was most abundant in the manure-treated soil. Effects on bacterial species richness and evenness following long-term soil treatments were also demonstrated by analyzing bacterial community DNA using amplified ribosomal DNA restriction analysis and repetitive extragenic palindromic-polymerase chain reaction fingerprinting. The richness and evenness of the bacterial community were enhanced by manure treatment and treatments that included N and P, which were positively correlated with soil productivity. 相似文献
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【目的】明确四川鲟源海豚链球菌Streptococcus iniae的毒力谱及分子流行病学特点,为鲟海豚链球菌病的防控提供参考。【方法】对四川地区17株鲟源海豚链球菌以及海豚链球菌ATCC29178进行毒力基因多重PCR检测,并通过随机扩增多态性DNA(RAPD)和重复序列PCR(REP-PCR)分析进行分子分型。【结果】所有菌株的7个主要毒力基因pgm、 scpI、 simA、 cpsD、 sagA、 pdi和cfi均为阳性,部分菌株的simA基因发生了变异。基于RAPD分析,18株菌分为Ⅰ、Ⅱ2个基因型;基于REP-PCR分析,18株菌分为A、B、C、D 4个基因型。【结论】四川地区17株鲟源海豚链球菌分离株均为强毒株,毒力谱为pgm/scpI/simA/cpsD/sagA/pdi/cfi,并且同时存在多种基因型的菌株,其中D型为优势流行型。 相似文献
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中国水稻白叶枯病原菌群体的遗传结构 总被引：8，自引：0，他引：8
用Rep-PCR和RFLP两种方法分析了143个水稻白叶枯病Xanthomonas oryzae pv.oryzae菌系。这些菌系采集于长江流域,华南,华北和东北的20个省市的96个点。Rap-PCR是利用一些基于细菌的短的重复单位引物(ERIC,BOX和REP)及来自稻白叶枯病原菌的可动重复单位(IS1112和IS1113)引物的DNA扩增特性。在RFLP分析中,以无毒基因家族中的一个成员avrXa10为探针。Rep-PCR分析呈显较高的单元型多样性(H=0.75)。在4个水稻生长地区中,Rep-PCR分析的结果是:华南稻区的遗传多样性最高(H=0.96),随后为长江流域(H=0.93),东北(H=0.77),华北(H=0.69)。根据3个分簇生物统计的共有指纹型,143个菌系被构成3簇。在各簇中都有来自不同水稻产区的菌系,表明菌系的分簇不受地理区域的影响。 相似文献
7.
基于BOX-PCR和REP-PCR技术青枯雷尔氏菌遗传多样性分析 总被引：2，自引：0，他引：2
青枯雷尔氏菌(Ralstonias olanace arum)能够对许多重要作物引起致命性萎蔫病害,广泛分布在热带、亚热带以及温带地区.研究青枯雷尔氏菌的遗传多样性对于了解青枯病的发生和流行具有十分重要的意义.本研究利用青枯雷尔氏菌特异性引物鉴定84株来自福建地区不同寄主的青枯雷尔氏菌,结果表明,这些菌株均在504 bp位置出现特异性条带.同时采用BOX插入因子PCR(BOX-PCR)和重复基因外回文序列PCR(REP-PCR)对这些菌株进行基因多样性研究,基于它们所扩增出的基因指纹图谱表明,BOX-PCR扩增出19条特异性条带,REP-PCR扩增出20条特异性条带.系统聚类结果表明,青枯雷尔氏菌的遗传分化与寄主作物和地理来源都存在相关性,其中,寄主植物是在遗传差异中起主导作用.进一步分析可知,地域性的差异主要由BOX-PCR提供,寄主间的差异主要由REP-PCR提供.不同地理来源的青枯雷尔氏菌在BOX-PCR中可扩增出各自特异性条带,在REP-PCR中同样具有与各个寄主相对应的特异性条带,利用这些特异性条带可以很容易区分不同寄主以及来源的青枯雷尔氏菌.BOX-PCR和REP-PCR多态性分析技术可为我国青枯雷尔氏菌基因多样性的研究提供另一条途径. 相似文献
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Shigeyuki Tajima Takashi Hirashita Kenji Yoshihara Ampan Bhromsiri Mika Nomura 《Soil Science and Plant Nutrition》2013,59(1):241-247
Repetitive extragenic palindromic (REP)-PCR and enterobacterial repetitive intergenic consensus (ERIC)-PCR analysis was applied to the identification and classification of local isolates of 44 Bradyrhizobium japonicum, 7 Sinorhizobium meliloti, 10 Rhizobium leguminosarum strains from Japan and Thai. Using genomic DNA of the 61 strains, both REP and ERIC primers induced reproducible PCR band patterns, although REP-PCR generated more bands and appeared to be more useful for distinguishing the isolates from each other. Using mixed matrix data from both REP- and ERIC-PCR data, it become possible to distinguish all the isolates analyzed in this experiment from each other. When cluster analysis was applied to both PCR matrix data of 44 B. japonicum isolates, only the REP-PCR dendrogram showed a grouping profile corresponding to the exo-polysaccharide phenotype with a exceptions. When the matrix data of R. leguminosarum and S. meliloti were subjected to cluster analysis, S. meliloti appeared to form a different subgroup from R. leguminosarum in the dendrogram of REP-PCR data except for one strain. In the case of ERIC-PCR, isolates of R. leguminosarum from northern Thailand formed a separate subgroup from other R. leguminosarum and S. meliloti which were dispersed in the dendrogram. These data suggest that REP-PCR and ERIC-PCR were effective for the identification of individual isolates even though the isolates showed a wide genetic diversity and the same phenotype. When the data of the local isolates from Japan and Thailand were subjected to cluster analysis, REP- and ERIC-PCR analysis revealed different grouping characteristics. 相似文献
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鸡舍环境金黄色葡萄球菌气溶胶产生及其传播的REP-PCR鉴定 总被引：3，自引：0，他引：3
采用ANDERSEN-6级空气微生物样品收集器和RCS离心式采样器在山东泰安4个鸡场舍内空气、舍外环境上风向10、50m和下风向10、50、100、200、400m不同距离处收集金黄色葡萄球菌,计算每个采样点的金黄色葡萄球菌浓度;与此同时,收集鸡的粪便,分离金黄色葡萄球菌。利用金黄色葡萄球菌DNA基因外重复一致回文序列聚合酶链式反应（Repetitive extragenic palindromic elements PCR,REP—PCR）鉴定技术,扩增不同测量点和粪便分离的金黄色葡萄球菌的DNA图谱。通过每个采样点的金黄色葡萄球菌的浓度变化以及金黄色葡萄球菌遗传相似性分析确认动物舍微生物气溶胶向舍外环境的传播。结果显示：4个鸡场舍内空气中金黄色葡萄球菌的浓度远远高于舍外上风和下风向的金黄色葡萄球菌浓度（P〈0．05或P〈0．01）,但是舍外下风不同距离间的金黄色葡萄球菌浓度差异并不显著（P〉0．05）。REP-PCR结果表明,从鸡的粪便中分离的金黄色葡萄球菌与从舍内空气中分离的部分金黄色葡萄球菌（38．7％）相似性可达100％,从鸡场舍外下风方向分离到的多数金黄色葡萄球菌（55．9％）与舍内空气或粪便中分离的金黄色葡萄球菌相似性可达100％。可见,它们分别是由粪便中遗传基因完全相同的菌株繁殖而来。而从鸡舍上风分离到的金黄色葡萄球菌与舍内空气或粪便中分离的金黄色葡萄球菌相似性仅在60％～87％。结果显示,鸡粪便中的金黄色葡萄球菌能够形成气溶胶,进入气悬状态,不仅能在舍内传播,而且还能够借助舍内外气体交换,传播到舍外下风一定的距离。从而说明,来自动物体的金黄色葡萄球菌既能污染舍内空气,对本舍鸡群构成传染威胁,又能传播一定的距离,对周边社区环境空气造成生物污染。 相似文献
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本试验进行了41个水稻品种的 GRA-PCR 和15个稻瘟病菌的 REP-PCR 分子指纹扩增和聚类分析;完成了品种和病菌互作人工接种试验。结果表明,供试品种的 GRA-PCR 指纹聚类后,以0.56遗传相似距离点划分时,供试的41个品种可分为两个遗传相似组,其中一组的19个品种大多数为云南省地方老品种,另一组的23个品种多数为近年来生产上的栽培品种。病菌 REP-PCR 指纹聚类后,在不同的相似距离划分时,获得不同的遗传相似组,当以0.08相似距离划分时,各遗传相似组的致病性与供试品种之间有一定的互作关系。 相似文献
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