Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by geographic features     

《Soil biology & biochemistry》2015

Here, we examine soil-borne microbial biogeography as a function of the features that define an American Viticultural Area (AVA), a geographically delimited American wine grape-growing region, defined for its distinguishing features of climate, geology, soils, physical features (topography and water), and elevation. In doing so, we lay a foundation upon which to link the terroir of wine back to the soil-borne microbial communities. The objective of this study is to elucidate the hierarchy of drivers of soil bacterial community structure in wine grape vineyards in Napa Valley, California. We measured differences in the soil bacterial and archaeal community composition and diversity by sequencing the fourth variable region of the small subunit ribosomal RNA gene (16S V4 rDNA). Soil bacterial communities were structured with respect to soil properties and AVA, demonstrating the complexity of soil microbial biogeography at the landscape scale and within the single land-use type. Location and edaphic variables that distinguish AVAs were the strongest explanatory factors for soil microbial community structure. Notably, the relationship with TC and TN of the <53 μm and 53–250 μm soil fractions offers support for the role of bacterial community structure rather than individual taxa on fine soil organic matter content. We reason that AVA, climate, and topography each affect soil microbial communities through their suite of impacts on soil properties. The identification of distinctive soil microbial communities associated with a given AVA lends support to the idea that soil microbial communities form a key in linking wine terroir back to the biotic components of the soil environment, suggesting that the relationship between soil microbial communities and wine terroir should be examined further.  相似文献   

Crunoecia irrorata (Curtis) (Trichoptera: Lepidostomatidae) and conservation of boreal springs: indications of clustering of red‐listed species     

Jari Ilmonen 《水产资源保护:海洋与淡水生态系统》2008,18(1):6-18

• 1. Crunoecia irrorata is widely dispersed across Europe, but rare and red‐listed in Finland. Its geographical range comprises most of the southern boreal zone in Fennoscandia. The species is confined to springs in the north, but occurs also in lower reaches of headwater streams in central and western Europe. It becomes more rare and less abundant towards the limits of its range across Europe, showing diffusive rarity. Glacial history and climate limit the distribution of the species in the north.
• 2. The most important habitat characteristic for C. irrorata in Finland was the total area of helocrene habitats. Its occurrence was positively related to taxon richness of benthic macroinvertebrates, but not bryophytes. Co‐occurrence of C. irrorata with other red‐listed spring‐dependent taxa was observed, indicating high conservation value of the springs occupied.
• 3. Crunoecia irrorata occurred frequently in moderately disturbed springs, indicating tolerance to human disturbance around springs. However, the effect of the disturbance on population size is not known. Forestry and water and gravel extraction are potential threats to C. irrorata, and only a few of its populations are strictly protected. Therefore, populations of C. irrorata in the boreal zone should be conserved and monitored to ensure the species' survival at the northern limits of its range.

Copyright © 2007 John Wiley & Sons, Ltd.  相似文献   

Molecular evidence for cosmopolitan distribution of platyhelminth parasites of tunas (Thunnus spp.)     

Hamish M Aiken  Nathan J Bott  Ivona Mladineo  Francisco E Montero  Barbara F Nowak  & Craig J Hayward 《Fish and Fisheries》2007,8(3):167-180

Global distribution of platyhelminth parasites and their host specificities are not well known. Our hypothesis was that platyhelminth parasites of large pelagic fishes are common around the world. We analysed molecular variation in three different taxa of platyhelminth parasites infecting four species of tunas: yellowfin tuna (Thunnus albacares, Scombridae) from Western Australia, southern bluefin tuna (Thunnus maccoyii, Scombridae) from South Australia, Pacific bluefin tuna (Thunnus orientalis, Scombridae) from Pacific Mexico and northern bluefin tuna (T. thynnus, Scombridae) from two localities in the Mediterranean (Spain and Croatia). Comparisons of ITS2 and partial 28S rDNA demonstrated two congeneric species of blood flukes (Digenea: Sanguinicolidae) from multiple hosts and localities: Cardicola forsteri from southern bluefin and northern bluefin tunas, and Cardicola sp. from Pacific bluefin and northern bluefin tunas; and a gill fluke, Hexostoma thynni (Polyopisthocotylea: Hexostomatidae), from yellowfin, southern bluefin and northern bluefin tunas. Partial 28S rDNA indicates that a second type of fluke on the gills, Capsala sp. (Monopisthocotylea: Capsalidae), occurs on both southern bluefin and Pacific bluefin tunas. This appears to be the first report of conspecific platyhelminth parasites of teleosts with a wide‐ranging geographical distribution that has been confirmed through molecular approaches. Given the brevity of the free‐living larval stage of both taxa of flukes on the gills (H. thynni and Capsala sp.), we conclude that the only feasible hypothesis for the cosmopolitan distribution of these flatworms is migrations of host tunas. Host migration also seems likely to be responsible for the widespread occurrence of the two species of blood flukes (Cardicola spp.), although it is also possible that these were translocated recently by the spread of infected intermediate hosts.  相似文献   

Biogeography of mangrove and saltmarsh vegetation: implications for conservation and management in Australia     

Bridgewater  Peter B.  Cresswell  Ian D. 《Mangroves and Salt Marshes》1999,3(2):117-125

Despite an undeserved reputation for being dull and homogenous systems, mangal and saltmarsh in Australia have highly complex patterns and processes. Their role as key edge systems between land and sea has implications for many species which have larval stages in mangal and saltmarsh, but spend adult life as benthic, pelagic or demersal species. Many such species are also important commercially. Mangal and saltmarsh are both highly dynamic systems, reacting rapidly to changes in hydrological condition and sedimentation. In many areas of the world mangal and saltmarsh are threatened systems, especially near human habitation. Appropriate management strategies for mangal and saltmarsh are therefore critical for both conservation and sustainable use, the two key objectives of the Convention on Biological Diversity. Clearing and associated development, invasion of alien species, pollution effects and poor management are the key threats to these systems. Management at a bioregional level, including the development of a comprehensive system of protected areas, is identified as the key management strategy which will ensure an adequate future for these dynamic systems.  相似文献   

Revision of Southern Hemisphere taxa referred to Fosterella (Crustacea: Cirripedia), and their extinction in response to Pleistocene cooling          下载免费PDF全文

John BUCKERIDGE 《Integrative zoology》2015,10(6):555-571

Extensive barnacle coquinas (barnamols) formed around New Zealand's North and Chatham Islands during the late Pliocene to early Pleistocene. The inner‐shelf megabalanine Fosterella is the primary constituent of these lithofacies, which also include epifaunal bivalves, bryozoans and less modified balanids like Notobalanus and Notomegabalanus. The status of genus Fosterella is reviewed, 3 species are retained and a new genus, Porobalanus, is proposed for Fosterella hennigi, a species restricted to the Early Pliocene of Cockburn Island, Antarctica. Significantly, Fosterella did not survive the New Zealand Pleistocene, although Notobalanus and Notomegabalanus, which have fossil records extending back to the Early Miocene, remain important components of present day cool‐temperate Southern Hemisphere faunas. Extinction of Fosterella, in shelf waters off Argentina, is explained through a combination of changing circulatory and sedimentary regimes, competition for food and space, predation and physiological constraints. The driver of these factors was rapid regional cooling. Zoobank registration: urn:lsid:zoobank.org:pub:DBB1CB34‐83E4‐48BA‐AA10‐81823017F37A  相似文献   

Effects of changing temperature on benthic marine life in Britain and Ireland     

Keith Hiscock  Alan Southward  Ian Tittley  Stephen Hawkins 《水产资源保护:海洋与淡水生态系统》2004,14(4):333-362

• 1. The coastal waters surrounding Britain and Ireland became warmer during the 20th century and, according to the UK Climate Impact Programme 2002 scenarios of change and other sources, average annual seawater temperatures may rise a further 2°C or more by the 2050s. This warming is part of a global rise in sea‐ and air‐surface temperatures that will cause changes in the distribution and abundance of species.
• 2. Initially, there will not be a wholesale movement northwards of southern species or retreat northwards of northern species, because many additional factors will influence the responses of the different organisms. Such factors include the hydrodynamic characteristics of water masses, the presence of hydrographical and geographical barriers to spread and the life history characteristics (reproductive mode, dispersal capability and longevity) of species. Survey data over the past century show how organisms react to changes of the order of 0.5°C, and in the last two decades, when sea temperatures have risen by as much as 1°C, there have been significant local changes in the distribution of intertidal organisms. These past changes provide a clue to more extensive changes expected in the future if global warming develops as predicted.
• 3. Where species affected by climate change are dominant or key structural or functional species in biotopes, there may be a change in the extent and distribution of those biotopes. Some, dominated by predominantly northern species such as the horse mussel Modiolus modiolus, may decline and reduce their value as rich habitats for marine life. Others, characterized by southern species, for example the sea fan Eunicella verrucosa and the alcyonacean Alcyonium glomeratum, may increase in extent.
• 4. Using information on the life history characteristics of species, their present distribution and other factors, a key supported by a decision tree has been constructed to identify ‘types’ of organism according to their likely response to temperature rise. Conspicuous and easily identified rocky substratum species are good candidates to track change. Using the key, many species are shown as likely to increase their range northwards significantly. In contrast, fewer will decline in abundance and extent in the north. If, as anticipated, global warming continues, then species with distributions already accurately mapped, or being mapped at present, will provide baseline data to test forecasts.

Copyright © 2004 John Wiley & Sons, Ltd.  相似文献   

Distribution and richness of diadromous fish assemblages in Western Europe: large-scale explanatory factors   总被引：2，自引：0，他引：2  

M. Béguer  L. Beaulaton  E. Rochard 《Ecology of Freshwater Fish》2007,16(2):221-237

Abstract –  The aim of this study was to analyse the distribution of 14 diadromous fish at the beginning of the 20th century in western Europe. This study was conducted on a set of 41 water basins. Five environmental variables were selected and we used generalised additive models for explaining the presence–absence of species. The richest basins were located in the centre of the study area. Six main assemblage types were identified along a latitudinal gradient; they were constituted of a common species basis but differed by the absence or presence of other species. The 10 single species models produced have moderate to very good discrimination level and they can correctly predict both absence and presence. Temperature is included in all but one model, response curves vary according to the species; surface area is included in six models.  相似文献   

Global spread and evolution of viral haemorrhagic septicaemia virus   总被引：1，自引：0，他引：1  

Studer J  Janies DA 《Journal of fish diseases》2011,34(10):741-747

Viral haemorrhagic septicaemia virus (VHSV) is a rhabdovirus that infects over 48 species of teleosts and is lethal in many. VHSV threatens marine and aquatic fisheries. VHSV was first discovered outside Europe in 1988 in fish from the Pacific coast of North America. In 1994, VHSV was discovered in Newfoundland. In 2003, VHSV was isolated from fish in Lake St. Clair (Michigan and Ontario). In this study, we used 46 nucleotide sequences for the glycoprotein gene from 12 studies and 150 nucleotide sequences for the nucleoprotein gene from nine studies. We combined phylogenetics and a geographic information system to visualize the transmission paths of VHSV lineages. We also reconstructed the spread of VHSV lineages through optimization of geographic data for viral isolates on phylogenetic trees. We demonstrate that VHSV was transmitted from the North Atlantic Ocean and/or Baltic Sea to the Atlantic coast of North America and Japan in independent events. From the Atlantic coast, the virus was transmitted independently to the Laurentian Great Lakes and the Pacific coast of Canada and the contiguous United States. From the Pacific Northwest, the virus was transmitted to Asia and Alaska in independent events. These results clarify the debate ongoing in the literature on the geographic spread of VHSV.  相似文献   

Fish species redundancy in estuaries: A major conservation concern in temperate estuaries under global change pressures     

Alan K. Whitfield  Trevor D. Harrison 《水产资源保护:海洋与淡水生态系统》2021,31(4):979-983

1. Fish assemblages in estuaries have a much lower species richness (number of taxa) when compared with the combined numbers of freshwater and marine species from adjacent aquatic ecosystems. This is primarily because of the relatively harsh and fluctuating physico-chemical conditions in estuaries compared with the more stable freshwater and marine environments.
2. A comprehensive fish survey of estuaries in South Africa is used as a basis to determine fish species richness in subtropical, warm temperate, and cool temperate systems along the coast, and to assess the degree of redundancy in the different biogeographic regions.
3. In general, only one or two species belonging to each of the detritivorous, piscivorous, zoobenthivorous, and zooplanktivorous fish guilds are numerically well represented in the larger cool temperate estuaries, but between four and 10 species in each of these guilds are usually recorded in the larger subtropical estuaries.
4. Although the overall low redundancy of fish species groups in estuaries has already been formally recognized in the literature, this short note highlights the sensitivity of certain trophic guilds in temperate South African estuaries to any form of redundancy, a characteristic that may be equally applicable, based on declining species richness with increasing latitude, to temperate estuaries in other parts of the world.

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中国东方蜜蜂的形态学及生物地理学研究   总被引：13，自引：2，他引：13  

谭垦  张炫  和绍禹  周丹银 《云南农业大学学报(自然科学版)》2005,20(3):410-414

 用形态学研究方法对中国的东方蜜蜂(Apis cerana)的形态特征进行研究。东方蜜蜂的标本从中国大陆的34个样点采集而来，这些样点代表了东方蜜蜂在中国大陆不同气候带或地理区域分布的不同类型。 34个点共采集了220群蜜蜂的样，每群蜂测定分析15只工蜂，形态的测定特征参照Ruttner 1988年提出的测定标准进行。每只蜂总共有38个测定的形态特征。测定的性状特征的数据进行因素分析，集合分析和区辨分析；形态性状与生态环境因子相关性分析；并与周边国家东方蜜蜂的相关数据进行比较，发现:生活在吉林长白山温带阔叶林的东方蜜蜂个体较大、体色较黑，与日本、韩国的东方蜜蜂较为相似；来自亚热带常绿阔叶林的东方蜜蜂（甘肃天水、湖北和湖南）与云南北部、北京、尼泊尔的东方蜜蜂聚集为一类；而居住在南方热带季雨林如：福建、广东、广西和云南部分南方的东方蜜蜂与低海拔亚热带常绿阔叶林的东方蜜蜂（越南、中国四川和安徽黄山）聚集为另一类； 云南南方如：景洪、思茅、河口、镇康、元江、屏边、蒙自草坝和开远的东方蜜蜂形成独特的一个分枝，与泰国和缅甸的东方蜜蜂非常接近，同时与亚热带常绿阔叶林的东方蜜蜂相邻；值得关注的是，来自高寒湿地的东方蜜蜂（甘肃岷县）是目前在亚洲已经发现的东方蜜蜂中，其个体最大、颜色最深。在因素分析和集合分析里，它具有独特的位置。  相似文献