排序方式： 共有52条查询结果，搜索用时 15 毫秒
1.
2.
分子标记的种间通用性可降低其开发成本,提高利用效率,促进遗传研究较薄弱物种的分子遗传学研究。为开发黄芪SSR分子标记,本研究利用大豆的66对基因组SSR(G-SSR)和43对EST-SSR引物在黄芪基因组中进行通用性分析,并选出其中条带清晰易辨的23对引物对6种不同来源的黄芪进行遗传分析。结果表明:大豆G-SSR、EST-SSR引物在黄芪中的通用性比例分别为31.82%、76.74%,多态性引物分别占18.18%、53.49%,大豆EST-SSR在黄芪的通用性高于基因组SSR,且通用的大豆SSR标记可以用于不同来源黄芪的遗传多样性分析。本研究发掘的多态性SSR引物可以有效用于黄芪的分子遗传多样性研究。 相似文献
3.
Summary Improved crop varieties developed at experimental stations are intended for release for production in farmers' fields which are not necessarily the test sites. Therefore, it is important to measure the inter-site transferability of the crop variety. This study was undertaken to establish a statistical measure of inter-site transferability of a variety. Data on grain yield from two sets of multi-locational trials on barley and four sets of the wheat trials conducted by the Cereal Program, International Center for Agricultural Research in the Dry Areas, Syria, were analyzed to evaluate the inter-site transferability of the varieties. Genotype × environment interaction was significant and experimental errors were heterogeneous in each set of trials. Correlations between the slope (of linear regression of variety mean on location mean) and variety mean were significant (P < 0.01) in all trials. Correlations between the developed inter-site transferability statistic and the variety mean were significant (P < 0.05) in only two trials. Correlations between mean yield and probability of the inter-site transferability statistic were insignificant in all trials. The inter-site transferability statistic and the associated probability of the transferability may be used to select varieties which are high yielding as well as transferable to a new environment. The strong association of slope with mean yield restricted the scope of varietal selection but the introduced statistic did not suffer from this drawback. 相似文献
4.
Sarika Gupta Kajal Kumari Mehanathan Muthamilarasan Alagesan Subramanian Manoj Prasad 《Plant Breeding》2013,132(4):367-374
Although the foxtail millet [Setaria italica (L.) P. Beauv.] is recently regarded as a model crop for studying functional genomics of biofuel grasses, its genetic improvement to some extent was limited due to the non‐availability of molecular markers, particularly the microsatellite markers and the saturated genetic linkage map. Considering this, we attempted to generate a significant number of microsatellite markers in cultivar ‘Prasad’. Two hundred and fifty‐six clones were sequenced to generate 41.82‐kb high‐quality sequences retrieved from genomic library enriched with dinucleotide repeat motifs. Microsatellites were identified in 194 (76%) of the 256 positive clones, and 64 primer pairs (pp) were successfully designed from 95 (49%) unique SSR‐containing clones. The 67.4% primer designing ability, 100% PCR amplification efficiency and 45.3% polymorphic potential in the parents of F2 mapping population established the efficacy of genomic microsatellites. All the 64 microsatellite markers displayed high level of cross‐species amplification (~67%) in 10 millets and non‐millets species. These experimental findings suggest the utility and efficacy of SSRs in diverse genotyping applications, resolving QTLs, phylogenetic relationships and transferability in several important grass species. 相似文献
5.
旨在分析玉米和高粱SSR标记在其近缘种薏苡中的通用性和多态性,以期筛选可用于薏苡种质资源和遗传学研究的分子标记。以11份薏苡资源为供试材料,利用SSR-PCR扩增和毛细管电泳检测方法,对364对SSR引物进行了测试和筛选。结果表明,364对玉米和高粱来源的标记中有163对能在薏苡中扩增并得到清晰的条带,其中44对标记在薏苡中表现出良好的多态性。高粱SSR的通用性和多态性比例分别为58.02%和30.85%,玉米SSR标记的通用性和多态性比例分别为23.45%和26.47%,高粱SSR标记在薏苡中通用性和多态性更好。44对引物在11份薏苡材料中扩增出110条多态性条带,每对引物扩增出的条带数在1～5条之间,平均为2.5条,PIC为0.15～0.79,其中15对引物的PIC值大于0.5,占全部多态性引物的34.09%。筛选出的通用SSR引物可为薏苡种质资源多样性和分子遗传学研究提供可用的遗传标记,也是高粱、玉米和薏苡3种作物之间比较基因组学研究的有力工具。 相似文献
6.
高粱SSR和EST-SSR标记在割手密中的通用性分析 总被引：1，自引：0，他引：1
目前, 割手密中开发的分子标记有限, 为增加其分子标记数量, 本研究对高粱分子标记在割手密中的通用性进行分析。选用高粱的 29对基因组 SSR标记和 20对 EST-SSR标记在割手密种质 GSM39中进行筛选, 以评价其通用性。进一步利用 14份割手密材料评价标记的多态性和遗传多样性。结果显示： 70%的 EST-SSR引物在割手密中得到成功扩增, 可用的 EST-SSR引物中多态性比率占 50%。SSR引物在割手密中的通用性比率只有 34.5%, 但多态性比率为 70%。14对多态性引物在 14份割手密中共检测到33个等位基因, 平均观测等位基因数为2.4286, 平均有效等位基因数为1.7, 平均观测表观杂合度为0.544, 平均期望杂合度为 0.3858, Nei’ s基因多样性指数平均值为 0.3716。结果表明, EST-SSR引物的通用性高于 SSR引物, 但 SSR引物的多态性更高。这对割手密遗传多样性研究和比较基因组学研究具有重要意义。 相似文献
7.
CUI Xiu-min DONG Yu-xiu HOU Xi-lin CHENG-Yan ZHANG Jing-yi JIN Min-feng 《中国农业科学(英文版)》2008,7(1):19-31
Simple sequence repeat （SSR） or microsatellite marker is a valuable tool for several purposes, such as mapping, fingerprinting, and breeding. In the present study, an intersimple sequence repeat （ISSR）-PCR technique was applied for developing SSR markers in non-heading Chinese cabbage （Brassica rapa）. A total of 190 SSRs were obtained. Among these, AG or CT （54.7%） was the most frequent repeat, followed by AC or GT （31.6%） of the microsatellites. The average number of the SSRs length array was 16 and 10 times, respectively. Based on the determined SSR sequences, 143 SSR primer pairs were designed to evaluate their transferabilities among the related species of Brassica. The number of alleles produced per marker averaged 2.91, and the polymorphism information content （PIC） value ranged from 0 to 0.863 with an average of 0.540. Monomorphism was observed in 16 primer pairs. The transferability percentage in CC genome was higher than in BB genome. More loci occurred in the BBCC genome. This result supported the hypothesis that BB genome was divergent from A and C genomes, and AA and CC genomes were relatively close. The polymorphic primers can be exploited for further evolution, fingerprinting, and variety identification. 相似文献
8.
对栽培和野生中国樱桃进行De novo基因组测序和比对,在全基因组范围内检测筛选出50 617个InDel位点,并挑选均匀分布的200个标记进行验证,其中,27个标记在中国樱桃种内表现出多态性。利用多态性标记,对不同来源的192份中国樱桃（168份栽培和24份野生）种质进行基因型分型,共检测到60个等位基因（Na）,平均每个标记2.2个;基因多样性指数（Hs）为0.010 ~ 0.500,平均0.239;多态性信息含量（PIC）为0.010 ~ 0.375,平均0.198,表明中国樱桃遗传基础相对狭窄。根据聚类结果和地理分布将192份中国樱桃种质大致划分为5个群体。筛选出在蔷薇科李亚科樱属、李属、桃属、杏属、苹果亚科梨属、苹果属和蔷薇亚科草莓属、悬钩子属等重要果树共8个属156个个体中表现出较好通用性标记34个。物种与中国樱桃亲缘关系越近,InDel标记的多态性越高。 相似文献
9.
10.
Development and assessment of habitat suitability criteria for adult brown trout in southern New England rivers 总被引：2，自引：0，他引：2
Abstract – Habitat suitability criteria (HSC) for depth, mean velocity, nose velocity, substrate, embeddedness, and cover were developed for brown trout ≥170 mm ( Salmo trutta Linnaeus) on the West Branch Farmington River, CT, USA. Microhabitat data was collected by underwater observation using an equal effort habitat sampling design; HSC were constructed using nonparametric tolerance limits. Transferability of previously published HSC to the West Branch Farmington River was poor; only 1 of 13 HSC tested was considered transferable. The HSC developed for the West Branch Farmington River were tested for transferability to the East Branch Westfield River, Massachusetts. First, a composite suitability index (SI) score was calculated using the source HSC for each occupied and unoccupied location in the Westfield River. Then, χ 2 -tests were used to determine if optimal or suitable locations were occupied in greater proportion than usable or unsuitable locations. Composite SI scores based on total depth, mean velocity, and cover were not transferable, but composite SI scores based only on total depth and mean velocity were. A multivariate profile analysis was also used to test for transferability. In each test, only total depth, fish depth, and mean velocity HSC were successfully transferred. Transferability of depth and velocity HSC between rivers shows promise for applications to similar systems where brown trout occur. 相似文献