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1.
Plant species exert strong effects on ecosystem functions and one of the emerging, and difficult to test hypotheses, is that plants alter soil functions through changing the community structure of soil microorganisms. We tested the hypothesis for atmospheric CH4 oxidation by using soil samples from a Siberian afforestation experiment and exposing them to 13C-CH4. We determined the activity of the soil methanotrophs under different tree species at three levels of initial CH4 concentration (30, 200 and 1000 ppm) thus distinguishing the activities of low- and high-affinity methanotrophs. Half of the samples were incubated with 13C-enriched CH4 (99.9%) and half with 12C-CH4. This allowed an estimation of the amount of 13C incorporated into individual PLFAs and determination of PLFAs of methanotrophs involved in CH4 oxidation at the different CH4 concentrations. Tree species strongly altered the activity of atmospheric CH4 oxidation without appearing to change the composition of high-affinity methanotrophs as evidenced by PLFA 13C labeling. The low diversity of atmospheric CH4 oxidizers, presumably belonging to the UCSα group, may explain the lack of tree species effects on the composition of soil methanotrophs. We submit that the observed tree species effects on atmospheric CH4 oxidation indicate an effect on biomass or cell-specific activities rather than by a community change and this may be related to the impact of the tree species on soil N cycling. 相似文献
2.
Marginal coastal soils are dependent on appropriate land management to prevent soil erosion, as a result of low soil stability combined with exposure to strong winds. An example of such an area is the machair, a fixed dune system utilized for agriculture in the northwest of Scotland, UK. The separate and combined effects of synthetic NPK fertilizer and a traditional soil conditioner (kelp, a seaweed) on soil structure formation, stabilization and biological parameters were studied on a cropped field on the machair. Soil physical properties examined included water retention at 10 kPa matric suction, water stable aggregates (WSA) >1 mm, aggregate stability, and biological properties including ester-linked fatty acid (ELFA) analysis and β-glucosidase activity for microbial biomass and activity, respectively. Significant treatment effects were few and inconsistent between sampling times, but included kelp and/or NPK fertilizer reducing aggregation, water retention, microbial biomass and activity relative to the unamended control treatment. Furthermore, seasonal variation, which could be attributed to changes in soil water content, was stronger than variation in response to fertilizer treatments. Principal components analysis of the ELFA data showed that ploughing promoted fungal biomass relative to bacteria, and confirmed both the absence of consistent synthetic and organic fertilizer effects and the sensitivity of microbial biomass to season. Overall, the study demonstrated the resilience of a calcareous sandy soil to amendment with fertilizer. 相似文献
3.
Many studies have examined how human-induced atmospheric changes will influence ecosystems. The long-term consequences of human induced climate changes on terrestrial ecosystems may be determined to a large extend by how the belowground compartment will respond to these changes. In a free-air ozone enrichment experiment running for 5 years, we reciprocally transplanted soil cores from ambient and elevated ozone rings to test whether exposure to elevated ozone results in persistent changes in the soil biota when the plant and soil are no longer exposed to elevated ozone, and how these legacy effects of elevated ozone influenced plant growth as compared to current effects of elevated ozone. After one growing season, the current ozone treatment enhanced plant growth, but in soil with a historical legacy of elevated ozone the plant biomass in that soil was reduced compared to the cores originated from ambient rings. Current exposure to ozone increased the phospholipid fatty acids of actinomycetes and protozoa, however, it decreased dissolved organic carbon, bacterivorous and fungivorous nematodes. Interestingly, numbers of bacterivorous and fungivorous nematodes were enhanced when soils with a legacy of elevated ozone were placed under elevated ozone conditions. We conclude that exposure to elevated [O3] results in a legacy effect in soil. This legacy effect most likely influenced plant growth and soil characteristics via responses of bacteria and fungi, and nematodes that feed upon these microbes. These soil legacies induced by changes in soil biotic community after long-term exposure of elevated ozone can alter the responses of ecosystems to current climatic changes. 相似文献
4.
The main energy sources of soil microorganisms are litter fall, root litter and exudation. The amount on these carbon inputs vary according to basal area of the forest stand. We hypothesized that soil microbes utilizing these soil carbon sources relate to the basal area of trees. We measured the amount of soil microbial biomass, soil respiration and microbial community structure as determined by phospholipid fatty acid (PLFA) profiles in the humus layer (FH) of an even-aged stand of Scots pine (Pinus sylvestris L.) with four different basal area levels ranging from 19.9 m2 ha−1 in the study plot Kasper 1 to 35.7 m2 ha−1 in Kasper 4. Increasing trend in basal respiration, total PLFAs and fungal-to-bacterial ratio was observed from Kasper 1 to Kasper 3 (basal area 29.2 m2 ha−1). The soil microbial community structure in Kasper 3 differed from that of the other study plots. 相似文献
5.
V.J. Allison Z. Yermakov R.M. Miller J.D. Jastrow R. Matamala 《Soil biology & biochemistry》2007,39(2):505-516
Simultaneously assessing shifts in microbial community composition along landscape and depth gradients allows us to decouple correlations among environmental variables, thus revealing underlying controls on microbial community composition. We examined how soil microbial community composition changed with depth and along a successional gradient of native prairie restoration. We predicted that carbon would be the primary control on both microbial biomass and community composition, and that deeper, low-carbon soils would be more similar to low-carbon agricultural soils than to high carbon remnant prairie soils. Soil microbial community composition was characterized using phospholipid fatty acid (PLFA) analysis, and explicitly linked to environmental data using structural equations modeling (SEM). We found that total microbial biomass declined strongly with depth, and increased with restoration age, and that changes in microbial biomass were largely attributable to changes in soil C and/or N concentrations, together with both direct and indirect impacts of root biomass and magnesium. Community composition also shifted with depth and age: the relative abundance of sulfate-reducing bacteria increased with both depth and restoration age, while gram-negative bacteria declined with depth and age. In contrast to prediction, deeper, low-C soils were more similar to high-C remnant prairie soils than to low-C agricultural soils, suggesting that carbon is not the primary control on soil microbial community composition. Instead, the effects of depth and restoration age on microbial community composition were mediated via changes in available phosphorus, exchangeable calcium, and soil water, together with a large undetermined effect of depth. Only by examining soil microbial community composition shifts across sites and down the soil column simultaneously were we able to tease apart the impact of these correlates environmental variables. 相似文献
6.
Estuarine sediments are the repository for a wide range of contaminants. Anthropogenic impacts and variations in the belowground biomass of salt marsh plants potentially select for different sediment microbial communities with different functional capabilities, including the ability to biotransform anthropogenic contaminants. There are large differences in both root morphology and the amount of fine root biomass of Spartina alterniflora and Phragmites australis; Spartina is the species commonly used to replace Phragmites in northeastern US salt marsh restoration projects. Our study compared the effect of these two macrophyte species on sediment microbial communities responsible for the biotransformation of the halogenated flame retardant tetrabromobisphenol A (TBBPA). Sediments were obtained from contaminated and uncontaminated salt marsh field sites in New Jersey. Anaerobic methanogenic sediment microcosms were established and incubated for up to 130 days. TBBPA was reductively dehalogenated resulting in the transient formation of two intermediates, identified as tribromobisphenol A and dibromobisphenol A, and the formation and accumulation of bisphenol A (BPA) as the end product. Spartina sediments from both sites were found to dehalogenate TBBPA more rapidly than the Phragmites or unvegetated sediments, resulting in greater production of BPA. Microbial community diversity as measured by in situ sediment phospholipid fatty acid (PLFA) composition prior to TBBPA exposure, was found to be higher in the uncontaminated sediments; differences in microbial PLFA diversity were not seen in contaminated sediments associated with either the different plant species or unvegetated sediment. The results of this study demonstrate that these two plant species affected sediment microbial community function with respect to dehalogenation capabilities, even though the disturbed and undisturbed sediments varied in microbial community composition. 相似文献
7.
The soil community is an often ignored part of research which links plant biodiversity and ecosystem functioning despite their influence on numerous functions such as decomposition and nutrient cycling. Few consistent patterns have been detected that link plant and soil community composition. We used a removal experiment in a northern Canadian grassland to examine the effects of plant functional group identity on soil microbial community structure and function. Plant functional groups (graminoids, legumes and forbs) were removed independently from plots for five growing seasons (2003-2007) and in the fifth year effects on the soil microbial community were examined using substrate-induced respiration (SIR - a measure of metabolic diversity) and phospholipid fatty acid analysis (PLFA - a measure of microbial community composition). Removal treatments were also crossed with both a fertilizer treatment and a fungicide treatment to determine if effects of functional group identity on the soil community were context dependent. Plant functional group identity had almost no effect on the soil microbial community as measured by either SIR or PLFA. Likewise, soil properties including total carbon, pH, moisture and nutrients showed a limited response to plant removals in the fifth year after removals. We found a direct effect of fertilizer on the soil community, with fertilized plots having decreased metabolic diversity, with a decreased ability to metabolize amino acids and a phenolic acid, but there was no direct soil microbial response to fungicide. We show that in this northern Canadian grassland the soil microbial community is relatively insensitive to changes in plant functional group composition, and suggest that in northern ecosystems, where plant material is only slowly incorporated into the soil, five growing seasons may be insufficient to detect the impact of a changing plant community on the soil microbes. 相似文献
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9.
Matthias C. Rillig Emily R. Lutgen Philip W. Ramsey John N. Klironomos James E. Gannon 《Pedobiologia》2005,49(3):43
Arbuscular mycorrhizal fungi (AMF) are key components of ecosystems through their influence on plant communities and ecosystem processes. A major source of information regarding the importance of AMF species richness on process rates are mesocosm experiments using different levels of diversity of AMF as provided by single-species cultures of AMF. Since AMF inocula are generally made available in the form of non-sterile pot culture material, it is possible that AMF symbiosis-associated microbiota are at least partially responsible for some effects hitherto directly attributed to the AMF mycelium. Here, we provide evidence that microbiota associated with single-species cultures of AMF (after long-term pot culture enrichment of 7–8 years) can strongly affect the ecosystem process of soil aggregation. This effect occurred in an AMF isolate specific manner, but in the absence of live and active AMF mycelium. We additionally documented large differences in microbiota communities associated with the different AMF inocula (using PLFA analyses), suggesting that these differences were at least partly responsible for the observed changes in soil aggregation. This result points to AMF–microbiota interactions as a largely unexplored mechanism underlying soil aggregation (and potentially other ecosystem processes). We suggest that a reinterpretation of previous experiments using greenhouse-derived AMF cultures may be necessary, and the need to consider AMF symbiosis-associated microbiota in mechanistic studies of AMF and mycorrhizae in general is emphasized. 相似文献
10.
Amy M. Treonis Roger Cook Lorna Dawson Susan J. Grayston Tony Mizen 《Biology and Fertility of Soils》2007,43(5):541-548
We studied the effects of the root endoparasitic nematode Heterodera trifolii on rhizodeposition and the root architecture of white clover (Trifolium repens). Rhizosphere solutions were collected from the root systems of plants growing with and without H. trifolii (200 juveniles per inoculated plant) in sand-based microlysimeters. The organic carbon (C) content of these solutions was
analyzed, and they were applied to plant-free soils to investigate microbial responses. Although plant biomass was unaffected
by nematodes, the architecture of the root systems was significantly altered, with a decrease in overall root length and an
increase in the density of lateral branches from the primary root. The presence of nematodes reduced the concentration of
organic compounds in the rhizosphere solutions but only on the final sampling date (75 days). Analysis of microbial signature
phospholipid fatty acids revealed no change in the structure of the microbial communities in soils to which rhizosphere solutions
were applied. However, these microorganisms did respond with changes in substrate utilization patterns (community-level physiological
profiles). Microbes in soils that received rhizosphere solutions from the nematode-infected clover showed lower utilization
of most substrates but higher utilization of oligosugars. These responses appear to be related to changes in roots and rhizodeposition
associated with nematode infection of clover roots. The results of this study suggest that root herbivory can negatively impact
carbon-limited soil microbial communities via changes in root architecture that moderate rhizodeposition. 相似文献