Polymerase chain reaction primers for highly selective detection of algicidal Proteobacteria     

Ryuji Kondo  Ichiro Imai 《Fisheries Science》2001,67(2):364-366

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昆虫病原线虫rDNA多态性分析   总被引：1，自引：0，他引：1  

丘雪红韩日畴  许再福 《昆虫天敌》2003,25(3):130-144

本文对国内外昆虫病原线虫斯氏属和异小杆属的47个品系进行rDNA—ITS PCR—RFLP分析，研究其DNA多态性，并构建了分子系统发育树状图。各品系的ITS区无明显的长度差异，PCR—RFLP分析将47个品系分为斯氏属和异小杆属两大类，两属线虫又分别分为11组和4组。所得结果丰富了ITS PCR—RFLP图谱库，为弄清我国的昆虫病原线虫与国外种类的分子系统发育关系及未定名线虫的鉴定提供重要依据，同时为筛选适合的线虫种类防治害虫奠定基础。  相似文献   

Identification of Rhizoctonia solani AG 1-IB in Lettuce, AG 4 HG-I in Tomato and Melon, and AG 4 HG-III in Broccoli and Spinach, in Brazil     

Eiko E. Kuramae  Alexandre L. Buzeto  Maisa B. Ciampi  Nilton L. Souza 《European journal of plant pathology / European Foundation for Plant Pathology》2003,109(4):391-395

Fungi isolated in Brazil, from lettuce, broccoli, spinach, melon and tomato, were identified as Rhizoctonia solani. All lettuce isolates anastomosed with both AG 1-IA and IB subgroups and all isolates from broccoli, spinach, melon and tomato anastomosed with AG 4 subgroup HG-I, as well as with subgroups HG-II and HG-III. DNA sequence analyses of ribosomal internal transcribed spacers showed that isolates from lettuce were AG 1-IB, isolates from tomato and melon were AG 4 HG-I, and isolates from broccoli and spinach were AG 4 HG-III. The tomato isolates caused stem rot symptoms, the spinach, broccoli and melon isolates caused hypocotyl and root rot symptoms on the respective host plants and the lettuce isolates caused bottom rot. This is the first report on the occurrence in Brazil of R. solani AG 4 HG-I in tomato and melon, of AG 4 HG-III in broccoli and spinach and of AG 1-IB in lettuce.  相似文献   

捕食线虫性真菌18S rDNA基因序列与种系发生关系研究     

杨莲茹  杨晓野  刘珍莲  汪明  考桂兰  刘海成  刘军 《畜牧兽医学报》2004,35(3):329-333

对捕食线虫性真菌——少孢节丛孢菌A1分离株(Arthrobotrys oligospora A1)的18S rDNA基因序列进行了研究。结果表明：其18S rDNA全基因序列为1769bp，在进化树上与同种国外分离株A．oligospora var oligospora 1最为接近，同源性为94．7％。这与二者都具有捕食性结构—菌网的特点相一致。证实捕食线虫性真菌的捕食性结构与捕食线虫性真菌种系发生有关。从少孢节丛孢菌3个分离菌株(Arthrobotrys oligospora A1、A．oligospora 1、A．oligospora2)的进化树及同源性来看。不同国家地区的丛孢菌属(Arthrobotrys)分离株确实存在差异。  相似文献   

规模化畜禽养殖场粪便中多重耐药菌分离鉴定及其耐药特征   总被引：2，自引：1，他引：1  

唐伟欣  孙兴滨  高浩泽  程首涛  仇天雷  王旭明 《农业环境科学学报》2020,39(1):207-216

为了解禽畜粪便中多重耐药菌的污染特征,本研究对鸡粪、牛粪、猪粪和有机肥这4种不同样品中多重耐药菌进行了计数分析,并对不同来源的多重耐药菌株进行了分离和纯化,进一步开展了基于16S rDNA序列比对的分子生物学鉴定以确定其种属地位,以及基于药敏试验的耐药性特征分析。结果表明:不同养殖动物粪便中四环素、恩诺沙星、磺胺甲恶唑和泰乐菌素4种抗生素多重耐药菌的绝对数量和相对数量排序均为鸡粪>猪粪>牛粪,粪源有机肥中可培养的多重耐药菌的绝对数量和相对数量在堆肥后均有所下降。通过对耐药菌株鉴定和分类学分析,发现禽畜粪便中多耐药菌的菌门集中分布在Proteobacteria、Firmicutes和Actinobacteria,多重耐药菌的优势菌属为Escherichia、Corynebacterium、Kurthia;而有机肥样品中多重耐药菌的优势菌属为Staphylococcus、Glutamicibacter。菌株的药敏试验表明,3类动物粪污中的多重耐药菌都对红霉素、四环素有着较高的耐药率,均高于80%,而对阿米卡星这种抗生素表现出较好的敏感性,其耐药率低于30%。通过对Ⅰ、Ⅱ类整合子基因盒的扩增,发现PCR产物的大小从0.8 kb到1.8 kb不等,基因盒ad A2、dfr A17、dfr A1及sat2在养殖场粪污中检出率均较高。  相似文献   

Morphology and molecular phylogeny of a poorly known species—Erysiphe bulbouncinula (Erysiphaceae) on Koelreuteria paniculata     

Li Liu  Shu‐Rong Tang  Susumu Takamatsu  Uwe Braun  Yu Li  Shu‐Yan Liu 《Forest Pathology》2020,50(4)

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Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by geographic features     

《Soil biology & biochemistry》2015

Here, we examine soil-borne microbial biogeography as a function of the features that define an American Viticultural Area (AVA), a geographically delimited American wine grape-growing region, defined for its distinguishing features of climate, geology, soils, physical features (topography and water), and elevation. In doing so, we lay a foundation upon which to link the terroir of wine back to the soil-borne microbial communities. The objective of this study is to elucidate the hierarchy of drivers of soil bacterial community structure in wine grape vineyards in Napa Valley, California. We measured differences in the soil bacterial and archaeal community composition and diversity by sequencing the fourth variable region of the small subunit ribosomal RNA gene (16S V4 rDNA). Soil bacterial communities were structured with respect to soil properties and AVA, demonstrating the complexity of soil microbial biogeography at the landscape scale and within the single land-use type. Location and edaphic variables that distinguish AVAs were the strongest explanatory factors for soil microbial community structure. Notably, the relationship with TC and TN of the <53 μm and 53–250 μm soil fractions offers support for the role of bacterial community structure rather than individual taxa on fine soil organic matter content. We reason that AVA, climate, and topography each affect soil microbial communities through their suite of impacts on soil properties. The identification of distinctive soil microbial communities associated with a given AVA lends support to the idea that soil microbial communities form a key in linking wine terroir back to the biotic components of the soil environment, suggesting that the relationship between soil microbial communities and wine terroir should be examined further.  相似文献   

普通荞麦染色体的原位PCR技术研究     

李分龙  陈庆富 《安徽农业科学》2011,(17):10135-10138

[目的]探索一种适合荞麦的简单易行的染色体原位PCR技术。[方法]采用16S套式引物、4．5S套式引物与psbA引物，以栽培甜荞为材料，进行染色体原位PCR、原位套式PCR与多次原位PCR试验。[结果]高温干燥可以起到与包埋类似的作用；染色体的原位套式PCR效果比原位PCR明显，多次原位PCR次数为5-6效果较佳。16S引物和4．5S引物均显示了4对信号，但位置不同；而psbA引物是单拷贝的，仅显示出1对信号。根据这些信号的位置差异可以区分普通荞麦的5对染色体。[结论]所使用的荞麦染色体原位PCR技术简单易行。  相似文献   

鲍曼不动杆菌雏鸡分离株CCGGD201101的分离、鉴定及致病性研究简     

邹德颖  刘东  郭兴  陈晓峰  胡盼  卢士英  周玉  柳增善  任洪林  于师宇 《中国畜牧兽医》2014,41(1):178-181

试验旨在鉴定吉林省某雏鸡孵育基地病死雏鸡组织中分离出的1株致病性菌CCGGD201101株并测定其致病性。对疑似致病菌进行生理生化试验、16S rDNA测序鉴定，并人工接种昆明鼠，测定其半数致死量，验证细菌毒力。经鉴定该菌为鲍曼不动杆菌（Acinetobacter baumannii）。以鲍曼不动杆菌CCGGD201101分离株为研究对象，并以鲍曼不动杆菌标准株（ATCC 19606）为对照，测得半数致死量，进一步证明鲍曼不动杆菌病死鸡分离株CCGGD201101具有较强致病性。  相似文献   

Sequence and Phylogenetic Analysis of rDNA ITS of Three Eimeria Species in Rabbit     

XU Jia-yuan  LIAO Gui-cheng  HU Hui-peng  CHEN Xiao-zhen  LIU Li-dan  WU Song-ming  WEN Yuan-hui  LIU Yuan  WENG Ya-biao  LIN Rui-qing 《中国畜牧兽医》2014,41(12):30-33

In order to study whether the internal transcribed spacers (ITS) sequence could be used as a molecular marker for the species identification of rabbit coccidian, the rDNA ITS of Eimeria intestinalis, Eimeria flavescens and Eimeria magna were amplified by polymerase chain reaction (PCR), and were cloned into pGEM-T Easy vector subsequently. The positive recombinant plasmids were identified by PCR and then sequenced. By sequence comparison and comparative analysis with the relative sequences of rabbit Eimeria spp. available in GenBank, the results showed that the lengths of Eimeria intestinalis, Eimeria flavescens and Eimeria magna were 1065, 1009 and 1047 bp, respectively, and the sequence homologies with the same species sequences were 99.2%, 99.0% and 94.5%, respectively, while were 55.3% to 82.1% compared with corresponding sequences of other different species sequences. The phylogenetic analysis using software Mega 5.0 showed that all rabbit coccidia clustered together in a clade, which was divided into two sister lineages, corresponding to the presence or absence of oocyst residuum. The result demonstrated ITS could be used as a molecular marker for the species identification of rabbit coccidia.  相似文献