| 磷虾类线粒体基因组的特征和基因排列比较 |
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| 作者姓名： | 申欣 王海青 王敏晓 刘斌 |
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| 作者单位： | 1. 淮海工学院海洋学院,连云港 222005;中国科学院海洋研究所,青岛266071
2. 中国科学院海洋研究所,青岛,266071 |
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| 基金项目： | 江苏省“青蓝工程”人才基金，江苏省海洋生物技术重点实验室基金，淮海工学院自然科学基金 |
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| 摘 要： | 利用长PCR扩增获得太平洋磷虾的线粒体DNA,结合鸟枪法和引物步移法测定太平洋磷虾的线粒体基因组。结果表明,太平洋磷虾线粒体基因组全长为16898bp,在最大非编码区中存在一个串联重复区域(4.7×154bp)。在15个主编码基因中,变异位点数最多的是nad5基因(319～321个),其次为nad4基因(284～285个)和cox1基因(232～233个)。因此,nad5基因和nad4基因可以作为候选的分子标记,用于分析磷虾类不同的物种和群体之间的生物多样性。对比泛甲壳动物的原始排列,太平洋磷虾和南极磷虾线粒体基因组共享3个转运RNA基因(tRNALeu(CUN)、tRNALeu(UUR)和tRNATrp)的易位。与太平洋磷虾线粒体基因组相比,南极磷虾线粒体基因组存在1个转运RNA基因(tRNAAsn)的重复和1个转运RNA基因(tRNAIle)的易位。太平洋磷虾和南极磷虾之间的基因排列并不完全一致,说明在磷虾类内部线粒体基因组的基因排列顺序并不保守。
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| 关 键 词： | 磷虾 长PCR 线粒体基因组 基因重排 分子标记 |
| 收稿时间： | 2011/7/9 0:00:00 |
| 修稿时间： | 2011/12/1 0:00:00 |
Comparison of the characteristics and gene order in mitochondrial genomes of krills |
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| Authors: | SHEN Xin WANG Hai-qing WANG Min-xiao LIU Bin |
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| Institution: | 1College of Marine Science, Huaihai Institute of Technology, Lianyungang 222005) (2Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071) |
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| Abstract: | The mitochondrial genomic DNA of Euphausia pacifica was obtained by long PCR amplification, and was then sequenced using shotgun and primer-walking strategies. The mitochondrial genome of E. pacifica is 16,898 bp in length. The largest non-coding region in E. pacifica mitochondrial genome contains one section with tandem repeats (4.7×154 bp). Nad5 gene has the largest number of different loci (319～321), followed by nad4 (284～285) and cox1 (232～233) gene. Therefore, nad5 and nad4 genes can be used as alternative molecular markers to analyze genetic diversity among krills species and populations. Translocation of three tRNAs (tRNALeu(CUN), tRNALeu(UUR) and tRNATrp) is shared by E. pacifica and E. superba mitochondrial genomes when compared with the pancrustacean ground pattern. The duplication of tRNAAsn and translocation of tRNAIle were found in the mitochondrial genome of E. superba when compared with the E. pacifica mitochondrial genome. Gene orders are not identical between E. pacifica and E. superba mitochondrial genomes, indicating that gene order is not conserved among euphausiids mitochondrial genomes. |
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| Keywords: | Krill Long PCR Mitochondrial genome Gene rearrangement Molecular marker |
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