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利用基因芯片鉴定梨品种自交不亲和基因型
引用本文:江南,谭晓风,张琳,邓靖.利用基因芯片鉴定梨品种自交不亲和基因型[J].园艺学报,2014,41(10):1983.
作者姓名:江南  谭晓风  张琳  邓靖
作者单位:1湖南工业大学包装与材料工程学院,湖南株洲 412007;2中南林业科技大学经济林培育与保护教育部重点实验室,经济林育种与栽培国家林业局重点实验室,长沙 410004
基金项目:国家自然科学基金面上项目(31272124);湖南省自然科学基金项目(12JJ6017)
摘    要:根据东方梨中已鉴定的46个S基因序列和S基因的结构特点,设计了86条寡核苷酸探针并制备成S基因寡核苷酸检测芯片,采用Cy3荧光修饰引物标记被检测品种的PCR产物并与芯片杂交,以检测不同品种的S基因型。结果表明:利用芯片与华梨2号、秀玉和德胜香等已知S基因型的品种杂交,杂交信号显示与各品种已知基因型相符合。利用芯片鉴定了丽江黄酸梨等27个未知S基因型的梨品种,获得了各品种的S基因型,随机选取部分品种进行DNA测序和序列分析,结果与芯片杂交结果完全一致,证明利用S基因寡核苷酸芯片鉴定梨品种S基因型结果准确可靠。

关 键 词:  自交不亲和  S基因型  寡核苷酸  芯片  
收稿时间:2014-06-26

Identifying Pear Cultivars S-genotypes Using Gene Chips
Institution:1.School of Packing and Material Engineering,Hunan University of Technology,Zhuzhou,Hunan 412007,China;2Key Laboratory of Cultivation and Protection for Non-wood Forest of Ministry of Education,the Key Laboratory of Non-wood Forest Product of Forestry Ministry,Central-south University of Forestry and Technology,Changsha 410004,China
Abstract:Based on the structure characteristic of self-incompatibility gene and the gene group sequences of 46 S genes in Oriental pear cultivars,86 probes for S-RNase detections were designed and oligonucleotide genechip was established. In order to detect the S-genotype of pear cultivars,the PCR products of S-RNase were amplified by Cy3-labeled primers and hybridized with the microarray. The cultivars with known S-genotype such as Huali 2 were hybridized with the genechip and 27 cultivars with unknown S-genotype were S-genotyped using the genechip. The DNA sequenced results of Huali 2,Xiuyu and Deshengxiang pears and randomly selected unknown S-genotype cultivars were consistent with the microarray analyses. In conclusion,the oligonucleotide genechip provided an accurate and reliable method for detecting S-genotype of pear cultivars.
Keywords:pear  self-incompatibility  S-genotype  oligonucleotide  genechip
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