PCR-SSCP analysis of <Emphasis Type="Italic">Fusarium</Emphasis> diversity in asparagus decline in Japan |
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| Authors: | Abu Shamim Mohammad Nahiyan Louisa Robinson Boyer Peter Jeffries Yoh-ichi Matsubara |
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| Institution: | (1) The United Graduate School of Agricultural Science, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan;(2) School of Biosciences, University of Kent, Canterbury, Kent, CT2 6NJ, UK;(3) Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan; |
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| Abstract: | The diversity of Fusarium populations in asparagus (Asparagus officinalis L.) decline fields in Japan was estimated by PCR-SSCP (single-stranded conformational polymorphism) analysis of the ITS2
regions of the nuclear rRNA genes. This method was used to rapidly and objectively identify pathogens associated with roots
of plants showing symptoms of asparagus decline collected from fields in five regions across Japan. Over 651 fusarial isolates
were obtained, and were easily differentiated into three principal species. Fusarium oxysporum f. sp. asparagi was most frequently isolated from the domestic five regions (68%), whereas Fusarium proliferatum (28.6%) was less frequent. Fusarium solani was found much rarely (2.5%). The frequency of isolation of Fusarium proliferatum increased gradually from the north to the south of Japan, though considerable differences were found between fields in each
region, as well as regional differences among the Fusarium populations. Most of the fusarial isolates were highly pathogenic in vitro. These results reveal that Fusarium oxysporum f. sp. asparagi and Fusarium proliferatum are important biotic factors which lead to asparagus decline in Japan. |
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