Microsatellite variability and its use in the characterization of cultivated clones of Hevea brasiliensis |
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| Authors: | T Saha C Bindu Roy M A Nazeer |
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| Institution: | Genome Analysis Laboratory, Rubber Research Institute of India, Kottayam 686 009, Kerala, India;E-mail: saha@rubberboard.org.in |
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| Abstract: | Microsatellite markers were developed and evaluated in Hevea brasiliensis, an important crop species producing natural rubber of commercial utility. Of eight microsatellite markers, four were found to be highly informative, amplifying a total of 19 alleles when evaluated against 27 cultivated Hevea clones/genotypes. Power of discrimination of the microsatellite loci was in the range of 0.62‐0.89, with a mean of 0.76 indicating these microsatellites could be valuable genetic markers for diversity characterization. A combination of four microsatellite markers was successfully used to discriminate uniquely all the 27 Hevea clones and some clone‐specific allelic profiles were generated. Cross‐species amplification of the markers developed in H. brasiliensis had also been demonstrated with two other Hevea species, H. benthamiana and H. spruceana, indicating a high degree of sequence homology at the flanking regions. Sequence analysis of the repeat region at the 3′‐UTR of the hydroxymethylglutaryl‐coenzyme A reductase gene, containing clusters of AG repeats in 15 clones, revealed the existence of two alleles based on the repeat length polymorphisms. Homozygosity as well as heterozygosity for both the alleles had also been detected among the clones. Frequency of homozygotes for the smaller allele (allele‐1) was found to be lower than the larger allele (allele‐2) among the primary clones of H. brasiliensis. |
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| Keywords: | cross-species amplification cultivar identification Hevea brasiliensis HMG-CoA reductase simple sequence repeats |
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