| 哈维氏弧菌感染的杂色鲍全组织均一化cDNA文库的构建 |
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| 引用本文： | 姜敬哲,张微,王江勇,王瑞旋,刘广锋.哈维氏弧菌感染的杂色鲍全组织均一化cDNA文库的构建[J].南方水产,2010,6(5):37-42. |
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| 作者姓名： | 姜敬哲 张微 王江勇 王瑞旋 刘广锋 |
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| 作者单位： | 1. 中国水产科学研究院南海水产研究所,广东,广州,510300
2. 中山大学,广东,广州,510275 |
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| 基金项目： | 现代农业产业技术体系建设专项资金，广东省科技推广项目，广东省重大科技兴海项目，中央级公益性科研院所基本科研业务费专项资金(中国水产科学研究院南海水产研究所)资助项目 |
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| 摘 要： | 提取了哈维氏弧菌（Vibrio harveryi）感染的杂色鲍（Haliotis diversicolorReeve）总RNA,采用SMART方法合成双链cDNA,并用双链特异核酸酶进行均一化处理。割取0.5~1.0和1.0~3.0kb的片段分别连接pDNR-LIB并转化大肠杆菌（Esherichia coli）,最终构建2种片段大小的杂色鲍全组织均一化cDNA文库。2文库库容均在2.5×105cfu.mL-1左右,PCR检测阳性重组率为100%。随机挑取200个克隆测序,获得高质量EST序列174条。组装后得到149条Unigenes,冗余率为14.37%。序列注释结果表明,有39条Unigene序列与已知基因高度相似。综上所述,文章所建cDNA文库质量良好,可以满足后续研究工作的需要。
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| 关 键 词： | 杂色鲍 cDNA文库 哈维氏弧菌 |
Construction of whole body normalized cDNA library of Haliotis diversicolor Reeve challenged by Vibro harveryi |
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| JIANG Jingzhe,ZHANG Wei,WANG Jiangyong,WANG Ruixuan,LIU Guangfeng.Construction of whole body normalized cDNA library of Haliotis diversicolor Reeve challenged by Vibro harveryi[J].South China Fisheries Science,2010,6(5):37-42. |
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| Authors: | JIANG Jingzhe ZHANG Wei WANG Jiangyong WANG Ruixuan LIU Guangfeng |
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| Institution: | 1. South China Sea Fisheries Research Institute,Chinese Academy of Fishery Sciences,Guangzhou 510300,China;2. Department of Equipment and Laboratory Management,Sun Yat-Sen University,Guangzhou 510275,China) |
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| Abstract: | We extracted the total RNA of Vibrio harveyi-challenged abalone（Haliotis diversicolor Reeve）.First and second strand cDNA were synthetized by using Creator SMART cDNA Construction Kit and further homogenization of cDNA library was carried out with duplex-specific nuclease（DSN）treatment.Fragments at length of 0.5~1.0 kb and 1.0~3.0 kb were ligated to pDNR-LIB and transformed into Esherichia coli strain DH10B.Both two cDNA libraries have a capacity of 2.5×105 cfu·mL-1,and all of the 30 randomly picked colonies are identified as positive recombinant plasmids by PCR.Furthermore,200 randomly selected clones were sequenced and 174 high quality ESTs were acquired,which belong to 149 unigenes including 12 contigs and 137 singlets after assembling with a redundancy rate of 14.37%.The result indicates that 39 unigenes get high similarity with known genes.In conclusion,the cDNA library we have constructed has good quality and can facilitate further research work. |
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| Keywords: | Haliotis diversicolor Reeve cDNA library Vibro harveryi |
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