Development of Strain-specific Primers for a Strain of Gliocladium catenulatum Used in Biological Control |
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| Authors: | Sari Paavanen-Huhtala Hanna Avikainen Tapani Yli-Mattila |
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| Institution: | (1) Department of Biology, Laboratory of Plant Physiology and Molecular Biology, FIN-20014, Finland;(2) University of Turku, Finland;;(3) Plant Production Research/Plant Protection, Agricultural Research Centre of Finland, FIN-31600 Jokioinen, Finland;(4) University of Turku, Finland |
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| Abstract: | The randomly amplified polymorphic DNA (RAPD) technique was used to develop strain-specific primers for Gliocladium catenulatum strain J1446, which is promising in biological control. One of the primer pairs developed proved to be strain-specific; strain J1446 was differentiated from 16 G. catenulatum strains and six other strains of two Gliocladium species, as well as from Trichoderma virens, and isolates of Nectria spp. and Fusarium spp. Specific primers were also tested with DNA isolated from cucumber leaves, treated or untreated with a solution made from Gliocladium powder. The expected amplification product was produced only from treated leaves. DNA isolated from Gliocladium-treated potato tubers and fungi grown in peat was also used in amplification reactions. Strain-specific primers detected strain J1446 when the amount of DNA was 5 pg or more. Some variation between the Gliocladium strains was found by the random amplified microsatellites method (RAMS) and the universally primed polymerase chain reaction method (UP-PCR), but no clear fragments specific to strain J1446 were produced. Cross-blot hybridisation of UP-PCR products differentiated strain J1446 from T. virens, but not from the Gliocladium isolates. The 28S rDNA sequences and  -tubulin sequences were identical or very similar in all Gliocladium strains. Thus, it is possible that the Gliocladium strains of the present study are conspecific, which means that a revision in the taxonomy of Gliocladium species may be necessary. |
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| Keywords: | Clonostachys RAMS RAPD-PCR SCAR Trichoderma UP-PCR |
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